Clone Sequence Records
BS07345.3prime Sequence
960 bp (778 high quality bases) assembled on 2006-01-06
> BS07345.3prime
ATGGTCTAGAAAGCTTTCACTCTGTTTCCGTTTCATTCTTCACAATCAGT
CGTTGCTTTTTTACAAAATGCTCTATCCGGTTCTCCAAACTCTCACATCG
TTTGCGTTCTAAAAGAGGCTGATATTGACGCGGATTGACGGAATCTTGCA
ACAGGATTACCTGAGCCAGTACCTTCTCTTTTGGCTTAAAATTCTCTTCA
AATAAGTTTTCCAATTGTTGCAGCACATTGCGTATCATGGTGCTCTTAAC
GCTAAATTGCGTCCACTCACACTGGGTGTTTTCAATAAGCTTTTGTAGAT
TTTCCTCATTGTAAATCCACGCTGTAAGATCACGCTCCAAGTGCTCCGGA
GCATTTAAGTCATTTGATTCGTCGGCGGCTGTATCCATGGCTTCTTCGTC
TGCATCACCGCTGCTTGGATGGTTTACACTTCTTGTTGTGTGGTCTCGAA
AGTCGCAACGAAACAGATTTAAGGGCAATCCAATTGCGGGGGTGTACTGA
GGCTTGCAGGGATTAGACTCCACATCAAGCAGGTCACTTATTACGCCCGG
GTTTTCCTTTTTTTGGCCAACAAGTAAAAGCACCGCCATTATGCAACGGA
TTTGGTGCCAAAGGAAGGCATTTGCTTGAATCTCCAGGTAGTACATGTCG
TAGCCTGAATTTGTATGATTTGTCTGATCACAAGCTTCCACCCTGGCAGA
TTGCAAGTTTCTCATGTAGTTGGTTACTCCGTTGTGCACGTCCATTTTGC
AGAAATTACGGAAGTCGGCGTGACGCACTAGGAGATCACAGGCTTTACGC
ATGGCAGCAATGTCCAGGTCACCCTTAGGAAAGTAGTAACGATAGGTGCG
GGAAACGCAATCAAATCGAGCGCTATAAACCGGACTGCGCAGTGGCATCC
AGCCACGCACTGAATGTTTCTGGGCAGCACTCGAATCANGAGTCCACAGT
AGTCAATCTC
BS07345.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3045-PA | 1500 | CG3045-RA | 616..1500 | 901..17 | 4425 | 100 | Minus |
CG3045-PA | 1500 | CG3045-RA | 556..615 | 960..901 | 206 | 93.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:33:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3045-RA | 1663 | CG3045-RA | 648..1592 | 960..17 | 4644 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:33:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22173007..22173570 | 94..657 | 2820 | 100 | Plus |
2R | 25286936 | 2R | 22173625..22173932 | 654..960 | 1434 | 98.4 | Plus |
2R | 25286936 | 2R | 22172874..22172951 | 17..94 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:33:46 has no hits.
BS07345.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:10:03 Download gff for
BS07345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3045-PA | 556..1500 | 17..960 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:59:13 Download gff for
BS07345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3045-PA | 556..1500 | 17..960 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:45:08 Download gff for
BS07345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3045-RA | 648..1595 | 10..960 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:11:14 Download gff for
BS07345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3045-RA | 648..1595 | 10..960 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:11:14 Download gff for
BS07345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22172867..22172950 | 10..93 | 95 | <- | Plus |
2R | 22173007..22173567 | 94..654 | 100 | <- | Plus |
2R | 22173626..22173932 | 655..960 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:45:08 Download gff for
BS07345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18060372..18060455 | 10..93 | 95 | <- | Plus |
arm_2R | 18060512..18061072 | 94..654 | 100 | <- | Plus |
arm_2R | 18061131..18061437 | 655..960 | 98 | | Plus |
BS07345.5prime Sequence
922 bp (843 high quality bases) assembled on 2006-01-06
> BS07345.5prime
GAAGTTATCAGTCGACATGAGTGCAACAAATGACAAAAAAGTTGTGATAA
ATAAACGATTAAAAGGCTTAAGCCGAGAGGCACTTGAAAAACTGACTCAA
ACCGAGCTGATCGACAAGGTTATCCAACTGGAGGCCTATAACTTTCAGTT
GCGGAATCTGCTGCAGAAAAAGTTAAGCGAGAAAGATAAACATGATAAGG
AATACTCTGGATTAATTGGAAACGAAGCGGAGGGCAAAGTTAGCCAGGTG
GCCAAGACATCCAGCAAAGTGCAGAAGATACGTAAGTTCGATTGGAGCAG
TGCACACAAGCGTCATGTCTTGCTTAAGATTACCTACTTTGGTTGGGATT
ATCAAGGATTTGCCTGCCAGGAGGATTCCAATGATACTATCGAATCCAAC
TTGTTCCGCGCTCTAGCTCGTACCTGCCTCATCGAATCTCGCGCCACTTC
CAATTATCACCGCTGTGGACGCACAGACAAGGAGGTGAGCGCCTTCTGCC
AGGTTATCTCCATAGATCTGCGCAGCAAGCATCCGCCCGAATCCCAGCTG
GATCCCACAGCGCTTTCCTCCGAGATTGACTACTGTGGACTCCTGAATCG
AGTGCTGCCCAAGAACATTCAGTGCGTGGCTTGGATGCCACTGCGCAGTC
CGGTTTATAGCGCTCGATTTGATTGCGTTTCCCGCACCTATCGTTACTAC
TTTCCTAAGGGTGACCTGGACATTGCTGCCATGCGTAAAGCCTGTGATCT
CCTAGTGCGTCACGCCGACTTCCGTAATTTCTGCAAAATGGACGTGCACA
ACGGAGTAACCAACTACATGAGAAACTTGCAATCTGCCAGGGTGGAAGCT
TGTGATCAGACAAATCATACAAATTCAGGCTACGACATGTACTACCTGNA
GATTCAAGCAAATGCCTTCCTT
BS07345.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3045-PA | 1500 | CG3045-RA | 1..906 | 17..922 | 4511 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:19:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3045-RA | 1663 | CG3045-RA | 93..998 | 17..922 | 4519 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:19:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22173625..22174112 | 879..392 | 2440 | 100 | Minus |
2R | 25286936 | 2R | 22174316..22174599 | 300..17 | 1420 | 100 | Minus |
2R | 25286936 | 2R | 22174168..22174262 | 392..298 | 475 | 100 | Minus |
2R | 25286936 | 2R | 22173524..22173570 | 922..876 | 224 | 97.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:19:03 has no hits.
BS07345.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:10:04 Download gff for
BS07345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3045-PA | 1..906 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:59:15 Download gff for
BS07345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3045-PA | 1..906 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:06:30 Download gff for
BS07345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3045-RA | 93..998 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:26:46 Download gff for
BS07345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3045-RA | 93..998 | 17..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:26:46 Download gff for
BS07345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22173524..22173567 | 879..922 | 97 | <- | Minus |
2R | 22173626..22174111 | 393..878 | 100 | <- | Minus |
2R | 22174168..22174259 | 301..392 | 100 | <- | Minus |
2R | 22174316..22174599 | 17..300 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:06:30 Download gff for
BS07345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18061029..18061072 | 879..922 | 97 | <- | Minus |
arm_2R | 18061131..18061616 | 393..878 | 100 | <- | Minus |
arm_2R | 18061673..18061764 | 301..392 | 100 | <- | Minus |
arm_2R | 18061821..18062104 | 17..300 | 100 | | Minus |
BS07345.complete Sequence
1532 bp (1532 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635825
> BS07345.complete
GAAGTTATCAGTCGACATGAGTGCAACAAATGACAAAAAAGTTGTGATAA
ATAAACGATTAAAAGGCTTAAGCCGAGAGGCACTTGAAAAACTGACTCAA
ACCGAGCTGATCGACAAGGTTATCCAACTGGAGGCCTATAACTTTCAGTT
GCGGAATCTGCTGCAGAAAAAGTTAAGCGAGAAAGATAAACATGATAAGG
AATACTCTGGATTAATTGGAAACGAAGCGGAGGGCAAAGTTAGCCAGGTG
GCCAAGACATCCAGCAAAGTGCAGAAGATACGTAAGTTCGATTGGAGCAG
TGCACACAAGCGTCATGTCTTGCTTAAGATTACCTACTTTGGTTGGGATT
ATCAAGGATTTGCCTGCCAGGAGGATTCCAATGATACTATCGAATCCAAC
TTGTTCCGCGCTCTAGCTCGTACCTGCCTCATCGAATCTCGCGCCACTTC
CAATTATCACCGCTGTGGACGCACAGACAAGGAGGTGAGCGCCTTCTGCC
AGGTTATCTCCATAGATCTGCGCAGCAAGCATCCGCCCGAATCCCAGCTG
GATCCCACAGCGCTTTCCTCCGAGATTGACTACTGTGGACTCCTGAATCG
AGTGCTGCCCAAGAACATTCAGTGCGTGGCTTGGATGCCACTGCGCAGTC
CGGTTTATAGCGCTCGATTTGATTGCGTTTCCCGCACCTATCGTTACTAC
TTTCCTAAGGGTGACCTGGACATTGCTGCCATGCGTAAAGCCTGTGATCT
CCTAGTGCGTCACGCCGACTTCCGTAATTTCTGCAAAATGGACGTGCACA
ACGGAGTAACCAACTACATGAGAAACTTGCAATCTGCCAGGGTGGAAGCT
TGTGATCAGACAAATCATACAAATTCAGGCTACGACATGTACTACCTGGA
GATTCAAGCAAATGCCTTCCTTTGGCACCAAATCCGTTGCATAATGGCGG
TGCTTTTACTTGTTGGCCAAAAAAAGGAAAACCCGGGCGTAATAAGTGAC
CTGCTTGATGTGGAGTCTAATCCCTGCAAGCCTCAGTACACCCCCGCAAT
TGGATTGCCCTTAAATCTGTTTCGTTGCGACTTTCGAGACCACACAACAA
GAAGTGTAAACCATCCAAGCAGCGGTGATGCAGACGAAGAAGCCATGGAT
ACAGCCGCCGACGAATCAAATGACTTAAATGCTCCGGAGCACTTGGAGCG
TGATCTTACAGCGTGGATTTACAATGAGGAAAATCTACAAAAGCTTATTG
AAAACACCCAGTGTGAGTGGACGCAATTTAGCGTTAAGAGCACCATGATA
CGCAATGTGCTGCAACAATTGGAAAACTTATTTGAAGAGAATTTTAAGCC
AAAAGAGAAGGTACTGGCTCAGGTAATCCTGTTGCAAGATTCCGTCAATC
CGCGTCAATATCAGCCTCTTTTAGAACGCAAACGATGTGAGAGTTTGGAG
AACCGGATAGAGCATTTTGTAAAAAAGCAACGACTGATTGTGAAGAATGA
AACGGAAACAGAGTGAAAGCTTTCTAGACCAT
BS07345.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:07:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3045-RA | 1500 | CG3045-PA | 1..1500 | 17..1516 | 7500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:07:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3045-RA | 1663 | CG3045-RA | 93..1592 | 17..1516 | 7500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:07:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22173007..22173570 | 1439..876 | 2820 | 100 | Minus |
2R | 25286936 | 2R | 22173625..22174112 | 879..392 | 2440 | 100 | Minus |
2R | 25286936 | 2R | 22174316..22174599 | 300..17 | 1420 | 100 | Minus |
2R | 25286936 | 2R | 22174168..22174262 | 392..298 | 475 | 100 | Minus |
2R | 25286936 | 2R | 22172874..22172951 | 1516..1439 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:07:08 has no hits.
BS07345.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:22 Download gff for
BS07345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3045-RA | 1..1500 | 17..1516 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:36 Download gff for
BS07345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3045-RA | 140..1642 | 17..1523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:47:22 Download gff for
BS07345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3045-RA | 93..1591 | 17..1515 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:22 Download gff for
BS07345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3045-RA | 140..1642 | 17..1523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:51:46 Download gff for
BS07345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3045-RA | 93..1591 | 17..1515 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:51:46 Download gff for
BS07345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22172875..22172950 | 1440..1515 | 100 | <- | Minus |
2R | 22173007..22173567 | 879..1439 | 100 | <- | Minus |
2R | 22173626..22174111 | 393..878 | 100 | <- | Minus |
2R | 22174168..22174259 | 301..392 | 100 | <- | Minus |
2R | 22174316..22174599 | 17..300 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:47:22 Download gff for
BS07345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18060380..18060455 | 1440..1515 | 100 | <- | Minus |
arm_2R | 18060512..18061072 | 879..1439 | 100 | <- | Minus |
arm_2R | 18061131..18061616 | 393..878 | 100 | <- | Minus |
arm_2R | 18061673..18061764 | 301..392 | 100 | <- | Minus |
arm_2R | 18061821..18062104 | 17..300 | 100 | | Minus |
BS07345.pep Sequence
Translation from 16 to 1515
> BS07345.pep
MSATNDKKVVINKRLKGLSREALEKLTQTELIDKVIQLEAYNFQLRNLLQ
KKLSEKDKHDKEYSGLIGNEAEGKVSQVAKTSSKVQKIRKFDWSSAHKRH
VLLKITYFGWDYQGFACQEDSNDTIESNLFRALARTCLIESRATSNYHRC
GRTDKEVSAFCQVISIDLRSKHPPESQLDPTALSSEIDYCGLLNRVLPKN
IQCVAWMPLRSPVYSARFDCVSRTYRYYFPKGDLDIAAMRKACDLLVRHA
DFRNFCKMDVHNGVTNYMRNLQSARVEACDQTNHTNSGYDMYYLEIQANA
FLWHQIRCIMAVLLLVGQKKENPGVISDLLDVESNPCKPQYTPAIGLPLN
LFRCDFRDHTTRSVNHPSSGDADEEAMDTAADESNDLNAPEHLERDLTAW
IYNEENLQKLIENTQCEWTQFSVKSTMIRNVLQQLENLFEENFKPKEKVL
AQVILLQDSVNPRQYQPLLERKRCESLENRIEHFVKKQRLIVKNETETE*
BS07345.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3045-PA | 499 | CG3045-PA | 1..499 | 1..499 | 2623 | 100 | Plus |