Clone BS07345 Report

Search the DGRC for BS07345

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:73
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptCG3045-RA
Protein status:BS07345.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07345.3prime Sequence

960 bp (778 high quality bases) assembled on 2006-01-06

> BS07345.3prime
ATGGTCTAGAAAGCTTTCACTCTGTTTCCGTTTCATTCTTCACAATCAGT
CGTTGCTTTTTTACAAAATGCTCTATCCGGTTCTCCAAACTCTCACATCG
TTTGCGTTCTAAAAGAGGCTGATATTGACGCGGATTGACGGAATCTTGCA
ACAGGATTACCTGAGCCAGTACCTTCTCTTTTGGCTTAAAATTCTCTTCA
AATAAGTTTTCCAATTGTTGCAGCACATTGCGTATCATGGTGCTCTTAAC
GCTAAATTGCGTCCACTCACACTGGGTGTTTTCAATAAGCTTTTGTAGAT
TTTCCTCATTGTAAATCCACGCTGTAAGATCACGCTCCAAGTGCTCCGGA
GCATTTAAGTCATTTGATTCGTCGGCGGCTGTATCCATGGCTTCTTCGTC
TGCATCACCGCTGCTTGGATGGTTTACACTTCTTGTTGTGTGGTCTCGAA
AGTCGCAACGAAACAGATTTAAGGGCAATCCAATTGCGGGGGTGTACTGA
GGCTTGCAGGGATTAGACTCCACATCAAGCAGGTCACTTATTACGCCCGG
GTTTTCCTTTTTTTGGCCAACAAGTAAAAGCACCGCCATTATGCAACGGA
TTTGGTGCCAAAGGAAGGCATTTGCTTGAATCTCCAGGTAGTACATGTCG
TAGCCTGAATTTGTATGATTTGTCTGATCACAAGCTTCCACCCTGGCAGA
TTGCAAGTTTCTCATGTAGTTGGTTACTCCGTTGTGCACGTCCATTTTGC
AGAAATTACGGAAGTCGGCGTGACGCACTAGGAGATCACAGGCTTTACGC
ATGGCAGCAATGTCCAGGTCACCCTTAGGAAAGTAGTAACGATAGGTGCG
GGAAACGCAATCAAATCGAGCGCTATAAACCGGACTGCGCAGTGGCATCC
AGCCACGCACTGAATGTTTCTGGGCAGCACTCGAATCANGAGTCCACAGT
AGTCAATCTC

BS07345.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3045-PA 1500 CG3045-RA 616..1500 901..17 4425 100 Minus
CG3045-PA 1500 CG3045-RA 556..615 960..901 206 93.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG3045-RA 1663 CG3045-RA 648..1592 960..17 4644 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:33:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22173007..22173570 94..657 2820 100 Plus
2R 25286936 2R 22173625..22173932 654..960 1434 98.4 Plus
2R 25286936 2R 22172874..22172951 17..94 390 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:33:46 has no hits.

BS07345.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:10:03 Download gff for BS07345.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3045-PA 556..1500 17..960 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:59:13 Download gff for BS07345.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3045-PA 556..1500 17..960 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:45:08 Download gff for BS07345.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3045-RA 648..1595 10..960 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:11:14 Download gff for BS07345.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3045-RA 648..1595 10..960 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:11:14 Download gff for BS07345.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22172867..22172950 10..93 95 <- Plus
2R 22173007..22173567 94..654 100 <- Plus
2R 22173626..22173932 655..960 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:45:08 Download gff for BS07345.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18060372..18060455 10..93 95 <- Plus
arm_2R 18060512..18061072 94..654 100 <- Plus
arm_2R 18061131..18061437 655..960 98   Plus

BS07345.5prime Sequence

922 bp (843 high quality bases) assembled on 2006-01-06

> BS07345.5prime
GAAGTTATCAGTCGACATGAGTGCAACAAATGACAAAAAAGTTGTGATAA
ATAAACGATTAAAAGGCTTAAGCCGAGAGGCACTTGAAAAACTGACTCAA
ACCGAGCTGATCGACAAGGTTATCCAACTGGAGGCCTATAACTTTCAGTT
GCGGAATCTGCTGCAGAAAAAGTTAAGCGAGAAAGATAAACATGATAAGG
AATACTCTGGATTAATTGGAAACGAAGCGGAGGGCAAAGTTAGCCAGGTG
GCCAAGACATCCAGCAAAGTGCAGAAGATACGTAAGTTCGATTGGAGCAG
TGCACACAAGCGTCATGTCTTGCTTAAGATTACCTACTTTGGTTGGGATT
ATCAAGGATTTGCCTGCCAGGAGGATTCCAATGATACTATCGAATCCAAC
TTGTTCCGCGCTCTAGCTCGTACCTGCCTCATCGAATCTCGCGCCACTTC
CAATTATCACCGCTGTGGACGCACAGACAAGGAGGTGAGCGCCTTCTGCC
AGGTTATCTCCATAGATCTGCGCAGCAAGCATCCGCCCGAATCCCAGCTG
GATCCCACAGCGCTTTCCTCCGAGATTGACTACTGTGGACTCCTGAATCG
AGTGCTGCCCAAGAACATTCAGTGCGTGGCTTGGATGCCACTGCGCAGTC
CGGTTTATAGCGCTCGATTTGATTGCGTTTCCCGCACCTATCGTTACTAC
TTTCCTAAGGGTGACCTGGACATTGCTGCCATGCGTAAAGCCTGTGATCT
CCTAGTGCGTCACGCCGACTTCCGTAATTTCTGCAAAATGGACGTGCACA
ACGGAGTAACCAACTACATGAGAAACTTGCAATCTGCCAGGGTGGAAGCT
TGTGATCAGACAAATCATACAAATTCAGGCTACGACATGTACTACCTGNA
GATTCAAGCAAATGCCTTCCTT

BS07345.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG3045-PA 1500 CG3045-RA 1..906 17..922 4511 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG3045-RA 1663 CG3045-RA 93..998 17..922 4519 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:19:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22173625..22174112 879..392 2440 100 Minus
2R 25286936 2R 22174316..22174599 300..17 1420 100 Minus
2R 25286936 2R 22174168..22174262 392..298 475 100 Minus
2R 25286936 2R 22173524..22173570 922..876 224 97.9 Minus
Blast to na_te.dros performed on 2015-02-11 09:19:03 has no hits.

BS07345.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:10:04 Download gff for BS07345.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3045-PA 1..906 17..922 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:59:15 Download gff for BS07345.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3045-PA 1..906 17..922 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:06:30 Download gff for BS07345.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3045-RA 93..998 17..922 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:26:46 Download gff for BS07345.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3045-RA 93..998 17..922 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:26:46 Download gff for BS07345.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22173524..22173567 879..922 97 <- Minus
2R 22173626..22174111 393..878 100 <- Minus
2R 22174168..22174259 301..392 100 <- Minus
2R 22174316..22174599 17..300 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:06:30 Download gff for BS07345.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18061029..18061072 879..922 97 <- Minus
arm_2R 18061131..18061616 393..878 100 <- Minus
arm_2R 18061673..18061764 301..392 100 <- Minus
arm_2R 18061821..18062104 17..300 100   Minus

BS07345.complete Sequence

1532 bp (1532 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635825

> BS07345.complete
GAAGTTATCAGTCGACATGAGTGCAACAAATGACAAAAAAGTTGTGATAA
ATAAACGATTAAAAGGCTTAAGCCGAGAGGCACTTGAAAAACTGACTCAA
ACCGAGCTGATCGACAAGGTTATCCAACTGGAGGCCTATAACTTTCAGTT
GCGGAATCTGCTGCAGAAAAAGTTAAGCGAGAAAGATAAACATGATAAGG
AATACTCTGGATTAATTGGAAACGAAGCGGAGGGCAAAGTTAGCCAGGTG
GCCAAGACATCCAGCAAAGTGCAGAAGATACGTAAGTTCGATTGGAGCAG
TGCACACAAGCGTCATGTCTTGCTTAAGATTACCTACTTTGGTTGGGATT
ATCAAGGATTTGCCTGCCAGGAGGATTCCAATGATACTATCGAATCCAAC
TTGTTCCGCGCTCTAGCTCGTACCTGCCTCATCGAATCTCGCGCCACTTC
CAATTATCACCGCTGTGGACGCACAGACAAGGAGGTGAGCGCCTTCTGCC
AGGTTATCTCCATAGATCTGCGCAGCAAGCATCCGCCCGAATCCCAGCTG
GATCCCACAGCGCTTTCCTCCGAGATTGACTACTGTGGACTCCTGAATCG
AGTGCTGCCCAAGAACATTCAGTGCGTGGCTTGGATGCCACTGCGCAGTC
CGGTTTATAGCGCTCGATTTGATTGCGTTTCCCGCACCTATCGTTACTAC
TTTCCTAAGGGTGACCTGGACATTGCTGCCATGCGTAAAGCCTGTGATCT
CCTAGTGCGTCACGCCGACTTCCGTAATTTCTGCAAAATGGACGTGCACA
ACGGAGTAACCAACTACATGAGAAACTTGCAATCTGCCAGGGTGGAAGCT
TGTGATCAGACAAATCATACAAATTCAGGCTACGACATGTACTACCTGGA
GATTCAAGCAAATGCCTTCCTTTGGCACCAAATCCGTTGCATAATGGCGG
TGCTTTTACTTGTTGGCCAAAAAAAGGAAAACCCGGGCGTAATAAGTGAC
CTGCTTGATGTGGAGTCTAATCCCTGCAAGCCTCAGTACACCCCCGCAAT
TGGATTGCCCTTAAATCTGTTTCGTTGCGACTTTCGAGACCACACAACAA
GAAGTGTAAACCATCCAAGCAGCGGTGATGCAGACGAAGAAGCCATGGAT
ACAGCCGCCGACGAATCAAATGACTTAAATGCTCCGGAGCACTTGGAGCG
TGATCTTACAGCGTGGATTTACAATGAGGAAAATCTACAAAAGCTTATTG
AAAACACCCAGTGTGAGTGGACGCAATTTAGCGTTAAGAGCACCATGATA
CGCAATGTGCTGCAACAATTGGAAAACTTATTTGAAGAGAATTTTAAGCC
AAAAGAGAAGGTACTGGCTCAGGTAATCCTGTTGCAAGATTCCGTCAATC
CGCGTCAATATCAGCCTCTTTTAGAACGCAAACGATGTGAGAGTTTGGAG
AACCGGATAGAGCATTTTGTAAAAAAGCAACGACTGATTGTGAAGAATGA
AACGGAAACAGAGTGAAAGCTTTCTAGACCAT

BS07345.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3045-RA 1500 CG3045-PA 1..1500 17..1516 7500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3045-RA 1663 CG3045-RA 93..1592 17..1516 7500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:07:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22173007..22173570 1439..876 2820 100 Minus
2R 25286936 2R 22173625..22174112 879..392 2440 100 Minus
2R 25286936 2R 22174316..22174599 300..17 1420 100 Minus
2R 25286936 2R 22174168..22174262 392..298 475 100 Minus
2R 25286936 2R 22172874..22172951 1516..1439 390 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:07:08 has no hits.

BS07345.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:22 Download gff for BS07345.complete
Subject Subject Range Query Range Percent Splice Strand
CG3045-RA 1..1500 17..1516 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:36 Download gff for BS07345.complete
Subject Subject Range Query Range Percent Splice Strand
CG3045-RA 140..1642 17..1523 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:47:22 Download gff for BS07345.complete
Subject Subject Range Query Range Percent Splice Strand
CG3045-RA 93..1591 17..1515 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:22 Download gff for BS07345.complete
Subject Subject Range Query Range Percent Splice Strand
CG3045-RA 140..1642 17..1523 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:51:46 Download gff for BS07345.complete
Subject Subject Range Query Range Percent Splice Strand
CG3045-RA 93..1591 17..1515 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:51:46 Download gff for BS07345.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22172875..22172950 1440..1515 100 <- Minus
2R 22173007..22173567 879..1439 100 <- Minus
2R 22173626..22174111 393..878 100 <- Minus
2R 22174168..22174259 301..392 100 <- Minus
2R 22174316..22174599 17..300 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:47:22 Download gff for BS07345.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18060380..18060455 1440..1515 100 <- Minus
arm_2R 18060512..18061072 879..1439 100 <- Minus
arm_2R 18061131..18061616 393..878 100 <- Minus
arm_2R 18061673..18061764 301..392 100 <- Minus
arm_2R 18061821..18062104 17..300 100   Minus

BS07345.pep Sequence

Translation from 16 to 1515

> BS07345.pep
MSATNDKKVVINKRLKGLSREALEKLTQTELIDKVIQLEAYNFQLRNLLQ
KKLSEKDKHDKEYSGLIGNEAEGKVSQVAKTSSKVQKIRKFDWSSAHKRH
VLLKITYFGWDYQGFACQEDSNDTIESNLFRALARTCLIESRATSNYHRC
GRTDKEVSAFCQVISIDLRSKHPPESQLDPTALSSEIDYCGLLNRVLPKN
IQCVAWMPLRSPVYSARFDCVSRTYRYYFPKGDLDIAAMRKACDLLVRHA
DFRNFCKMDVHNGVTNYMRNLQSARVEACDQTNHTNSGYDMYYLEIQANA
FLWHQIRCIMAVLLLVGQKKENPGVISDLLDVESNPCKPQYTPAIGLPLN
LFRCDFRDHTTRSVNHPSSGDADEEAMDTAADESNDLNAPEHLERDLTAW
IYNEENLQKLIENTQCEWTQFSVKSTMIRNVLQQLENLFEENFKPKEKVL
AQVILLQDSVNPRQYQPLLERKRCESLENRIEHFVKKQRLIVKNETETE*

BS07345.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG3045-PA 499 CG3045-PA 1..499 1..499 2623 100 Plus