Clone BS07349 Report

Search the DGRC for BS07349

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:73
Well:49
Vector:pDNR-Dual
Associated Gene/Transcriptslmo-RA
Protein status:BS07349.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07349.3prime Sequence

678 bp (677 high quality bases) assembled on 2006-01-06

> BS07349.3prime
ATGGTCTAGAAAGCTTCTACGTAATGTGCATCGCCTTCGCCGCCTTGGCG
GCCTGCGCACTGATCTCGTCCATGCTCTTCCGCGCGCTCTCCGTCACCTC
GTCGATGGAGCGCCGTGTGTTGTGCAGAAGTTCGTCGGTGCCGCGAGCGA
TGCCCTTGACCTCCGTGTTGATCAGCCCGATCACCCACTCCAGGCCCTGG
CGTCCCTTGCCGGCATTTGTGCTAATGGTCGAGGTGAGCAGGTCCTCCAT
GTAGTGGGACAGCGGCACACCAAAGACGGTCACGGTGGCCTCCTGCTTGA
GCAGCGTCTTGCTGGCATCCGACGGATGCGGCTCATAGTAGAGCACCTCG
TCCACGCTGATGTTGCGGCAGAAGGTGAGGTTGTTTGTCTTCAGCACCAT
CTGTTTGCGCTCCGGGTCCACCGTGGAGCGTTCGCTGGCGAAACAAGTTT
TGGCCGTGCCGATCAGCGCGTGCGTCCACTTGGGGAAGTACCACTTGGAC
TGCACCAGGCGATGCGTGTGCAGGACGCCGTCCACCACACGGCGCTCGAC
CACGTCCGTGCCAATGATGGAGGGCGTCATCGGATTGGGGTACTTGCGCC
ACGCCGCCTGCGTGACCGTCTCCCACGGGTGGTTGAATATGTGCTCCGAT
GTCCAGATTTTCATGTCGACTGATAACT

BS07349.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG9131-PA 648 slmo-RA 1..648 664..17 3240 100 Minus
CG9131-PB 648 slmo-RB 1..648 664..17 3240 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:24
Subject Length Description Subject Range Query Range Score Percent Strand
slmo-RE 1419 CG9131-RE 235..882 664..17 3240 100 Minus
slmo-RD 2056 CG9131-RD 1007..1654 664..17 3240 100 Minus
slmo-RC 1703 CG9131-RC 654..1301 664..17 3240 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6047053..6047700 17..664 3240 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:57:24 has no hits.

BS07349.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:10:12 Download gff for BS07349.3prime
Subject Subject Range Query Range Percent Splice Strand
slmo-PA 1..648 17..664 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:59:25 Download gff for BS07349.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9131-PB 1..648 17..664 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:07:50 Download gff for BS07349.3prime
Subject Subject Range Query Range Percent Splice Strand
slmo-RC 650..1306 9..672 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:18:25 Download gff for BS07349.3prime
Subject Subject Range Query Range Percent Splice Strand
slmo-RC 650..1306 9..672 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:18:25 Download gff for BS07349.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6047048..6047704 9..672 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:07:50 Download gff for BS07349.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6047048..6047704 9..672 98   Plus

BS07349.5prime Sequence

678 bp (677 high quality bases) assembled on 2006-01-06

> BS07349.5prime
GAAGTTATCAGTCGACATGAAAATCTGGACATCGGAGCACATATTCAACC
ACCCGTGGGAGACGGTCACGCAGGCGGCGTGGCGCAAGTACCCCAATCCG
ATGACGCCCTCCATCATTGGCACGGACGTGGTCGAGCGCCGTGTGGTGGA
CGGCGTCCTGCACACGCATCGCCTGGTGCAGTCCAAGTGGTACTTCCCCA
AGTGGACGCACGCGCTGATCGGCACGGCCAAAACTTGTTTCGCCAGCGAA
CGCTCCACGGTGGACCCGGAGCGCAAACAGATGGTGCTGAAGACAAACAA
CCTCACCTTCTGCCGCAACATCAGCGTGGACGAGGTGCTCTACTATGAGC
CGCATCCGTCGGATGCCAGCAAGACGCTGCTCAAGCAGGAGGCCACCGTG
ACCGTCTTTGGTGTGCCGCTGTCCCACTACATGGAGGACCTGCTCACCTC
GACCATTAGCACAAATGCCGGCAAGGGACGCCAGGGCCTGGAGTGGGTGA
TCGGGCTGATCAACACGGAGGTCAAGGGCATCGCTCGCGGCACCGACGAA
CTTCTGCACAACACACGGCGCTCCATCGACGAGGTGACGGAGAGCGCGCG
GAAGAGCATGGACGAGATCAGTGCGCAGGCCGCCAAGGCGGCGAAGGCGA
TGCACATTACGTAGAAGCTTTCTAGACC

BS07349.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9131-PA 648 slmo-RA 1..648 17..664 3240 100 Plus
CG9131-PB 648 slmo-RB 1..648 17..664 3240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:35:48
Subject Length Description Subject Range Query Range Score Percent Strand
slmo-RE 1419 CG9131-RE 235..882 17..664 3240 100 Plus
slmo-RD 2056 CG9131-RD 1007..1654 17..664 3240 100 Plus
slmo-RC 1703 CG9131-RC 654..1301 17..664 3240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6047053..6047700 664..17 3240 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:35:46 has no hits.

BS07349.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:10:13 Download gff for BS07349.5prime
Subject Subject Range Query Range Percent Splice Strand
slmo-PA 1..648 17..664 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:59:26 Download gff for BS07349.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9131-PB 1..648 17..664 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:35:43 Download gff for BS07349.5prime
Subject Subject Range Query Range Percent Splice Strand
slmo-RC 650..1306 9..672 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:17:05 Download gff for BS07349.5prime
Subject Subject Range Query Range Percent Splice Strand
slmo-RC 650..1306 9..672 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:17:05 Download gff for BS07349.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6047048..6047704 9..672 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:35:43 Download gff for BS07349.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6047048..6047704 9..672 98   Minus

BS07349.complete Sequence

680 bp (680 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635826

> BS07349.complete
GAAGTTATCAGTCGACATGAAAATCTGGACATCGGAGCACATATTCAACC
ACCCGTGGGAGACGGTCACGCAGGCGGCGTGGCGCAAGTACCCCAATCCG
ATGACGCCCTCCATCATTGGCACGGACGTGGTCGAGCGCCGTGTGGTGGA
CGGCGTCCTGCACACGCATCGCCTGGTGCAGTCCAAGTGGTACTTCCCCA
AGTGGACGCACGCGCTGATCGGCACGGCCAAAACTTGTTTCGCCAGCGAA
CGCTCCACGGTGGACCCGGAGCGCAAACAGATGGTGCTGAAGACAAACAA
CCTCACCTTCTGCCGCAACATCAGCGTGGACGAGGTGCTCTACTATGAGC
CGCATCCGTCGGATGCCAGCAAGACGCTGCTCAAGCAGGAGGCCACCGTG
ACCGTCTTTGGTGTGCCGCTGTCCCACTACATGGAGGACCTGCTCACCTC
GACCATTAGCACAAATGCCGGCAAGGGACGCCAGGGCCTGGAGTGGGTGA
TCGGGCTGATCAACACGGAGGTCAAGGGCATCGCTCGCGGCACCGACGAA
CTTCTGCACAACACACGGCGCTCCATCGACGAGGTGACGGAGAGCGCGCG
GAAGAGCATGGACGAGATCAGTGCGCAGGCCGCCAAGGCGGCGAAGGCGA
TGCACATTACGTAGAAGCTTTCTAGACCAT

BS07349.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
slmo-RE 648 CG9131-PE 1..648 17..664 3240 100 Plus
slmo-RD 648 CG9131-PD 1..648 17..664 3240 100 Plus
slmo-RC 648 CG9131-PC 1..648 17..664 3240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
slmo-RE 1419 CG9131-RE 235..882 17..664 3240 100 Plus
slmo-RD 2056 CG9131-RD 1007..1654 17..664 3240 100 Plus
slmo-RC 1703 CG9131-RC 654..1301 17..664 3240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:44:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6047053..6047700 664..17 3240 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:44:02 has no hits.

BS07349.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:19 Download gff for BS07349.complete
Subject Subject Range Query Range Percent Splice Strand
slmo-RC 1..648 17..664 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:37 Download gff for BS07349.complete
Subject Subject Range Query Range Percent Splice Strand
slmo-RC 449..1105 9..672 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:37 Download gff for BS07349.complete
Subject Subject Range Query Range Percent Splice Strand
slmo-RC 654..1301 17..664 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:19 Download gff for BS07349.complete
Subject Subject Range Query Range Percent Splice Strand
slmo-RC 449..1105 9..672 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:06 Download gff for BS07349.complete
Subject Subject Range Query Range Percent Splice Strand
slmo-RC 654..1301 17..664 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:06 Download gff for BS07349.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6047053..6047700 17..664 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:37 Download gff for BS07349.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6047053..6047700 17..664 100   Minus

BS07349.pep Sequence

Translation from 16 to 663

> BS07349.pep
MKIWTSEHIFNHPWETVTQAAWRKYPNPMTPSIIGTDVVERRVVDGVLHT
HRLVQSKWYFPKWTHALIGTAKTCFASERSTVDPERKQMVLKTNNLTFCR
NISVDEVLYYEPHPSDASKTLLKQEATVTVFGVPLSHYMEDLLTSTISTN
AGKGRQGLEWVIGLINTEVKGIARGTDELLHNTRRSIDEVTESARKSMDE
ISAQAAKAAKAMHIT*

BS07349.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
slmo-PE 215 CG9131-PE 1..215 1..215 1130 100 Plus
slmo-PD 215 CG9131-PD 1..215 1..215 1130 100 Plus
slmo-PC 215 CG9131-PC 1..215 1..215 1130 100 Plus
slmo-PB 215 CG9131-PB 1..215 1..215 1130 100 Plus
slmo-PA 215 CG9131-PA 1..215 1..215 1130 100 Plus