Clone Sequence Records
BS07356.3prime Sequence
955 bp (889 high quality bases) assembled on 2006-01-06
> BS07356.3prime
ATGGTCTAGAAAGCTTCTATCTTATGTAACCCCGGTTAATGAGCCATGGC
AATATGACTTTTATCTGATCCACGTAAGCCGGCAACAGGAACATCTTACG
CTTAAACGCGATCGCCTCCTCCGAATTACCCATTACGTTGCCTATATGTG
AATCAACATCGGGCGGGAGCAGAACAATTGGAAGCATTCGCTGGGCGCAT
ATGAAAGCCCAGAGACTATATCGGTGTAGATGGGCGTGGAACTTGGATAG
TGTGGGTGCATTCCGATTGTAATTGAGCATAGTGAGGTGTTCGACTAGCT
GCTGGTGATAATACTCTATGAAATAGTCGAATTTGTCCAGTTTGATTGAA
AACTTAGGTGAGGTCATCAGTATGCATAGAAGATCTTGGGCGGGTGTGCC
ATATTTTGGGAGCTGGAAGTCAACAAAGCAAACGTCCTCCACTTCTGAGG
CGTTTTTATACTTGAACATAAAGTTATTGCACCAAAAATCTCCGTGGTTT
AACACAGATAACTCCAGAGGATCGTTCTTACCAAACTCAATATTCAGATC
CGTCAGTTGAGATGTATAGTCGCTTATGAGAACGAGCTGTCCTGGCTCAA
GATTATATTGCTGCATGCACTCCAGGAAGGGCATACAAAAATTAATGTTG
AATTCATCGAGTAATTTCTGGTGCTCAGTAGTAAAGTAACTCTCCCGGAT
GTCCTTCTCGTATTCACCCAGCTCGACTACTCTTTTTGCAGAGGCTGCGT
GCCACTGTGCCAACTTCTTGAGGACCGCCTCCACTTCAAACTGCTCCAAT
CCCTGGGTTCTGTCGGCATTCCTATATCCCTTCTTCCGCAGATCCTCCAA
AAGAATGTAGTCGCTTTTTACCGGCTCTCCTGGAAACTTCAGATGAACAG
GCTTGAATTTTGGTGATATGGGAGTGTTTTTGGCATATAGATCCTCCAAT
TCTGG
BS07356.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10675-PA | 1230 | CG10675-RA | 292..1230 | 955..17 | 4670 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHKov2-RA | 1450 | CG10675-RA | 349..1288 | 955..16 | 4685 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25330423..25330803 | 575..955 | 1890 | 99.7 | Plus |
3R | 32079331 | 3R | 25329692..25329884 | 16..208 | 965 | 100 | Plus |
3R | 32079331 | 3R | 25329950..25330142 | 208..400 | 965 | 100 | Plus |
3R | 32079331 | 3R | 25330197..25330372 | 399..574 | 880 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:59:35 has no hits.
BS07356.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:10:27 Download gff for
BS07356.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10675-PA | 292..1230 | 17..955 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:59:45 Download gff for
BS07356.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10675-PA | 292..1230 | 17..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:06 Download gff for
BS07356.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHKov2-RA | 349..1288 | 16..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:50 Download gff for
BS07356.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHKov2-RA | 349..1288 | 16..955 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:50 Download gff for
BS07356.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25329692..25329883 | 16..207 | 100 | <- | Plus |
3R | 25329950..25330141 | 208..399 | 100 | <- | Plus |
3R | 25330198..25330372 | 400..574 | 100 | <- | Plus |
3R | 25330423..25330803 | 575..955 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:06 Download gff for
BS07356.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21155414..21155605 | 16..207 | 100 | <- | Plus |
arm_3R | 21155672..21155863 | 208..399 | 100 | <- | Plus |
arm_3R | 21155920..21156094 | 400..574 | 100 | <- | Plus |
arm_3R | 21156145..21156525 | 575..955 | 99 | | Plus |
BS07356.5prime Sequence
930 bp (807 high quality bases) assembled on 2006-01-06
> BS07356.5prime
GAAGTTATCAGTCGACATGACTGACCAACCAACTCCACAGTGGGTGACCA
AGGAGCTATTCAGCAGCTTGTTGGAACAGAGTAATCGAAATTTCAAGGCG
ATCATTAAATTTGTTCCAACATCAGCGATTAGCAAAGGGGAAAACTATTT
GACGATCGTGCTGCGCATACAAATTGAAATGCAGCTGAAAGATAACAGCA
TAGAAGATGTCAGCTACATACTGAAGATTCCTTTAGTCCCGGAAGATGAG
AAGAACGACTTCCACGAAATGTTCGATGCCGAACTGGACATGTACGATCA
TCTGATACCAGAATTGGAGGATCTATATGCCAAAAACACTTCCATATCAC
CAAAATTCAAGCCTGTTCATCTGAAGTTTCCAGGAGAGCCGGTAAAAAGC
GACTACATTCTTTTGGAGGATCTGCGGAAGAAGGGATATAGGAATGCCGA
CAGAACCCAGGGATTGGAGCAGTTTGAAGTGGAGGCGGTCCTCAAGAAGT
TGGCACAGTGGCACGCAGCCTCTGCAAAAAGAGTAGTCGAGCTGGGTGAA
TACGAGAAGGACATCCGGGAGAGTTACTTTACTACTGAGCACCAGAAATT
ACTCGATGAATTCAACATTAATTTTTGTATGCCCTTCCTGGAGTGCATGC
AGCAATATAATCTTGAGCCAGGACAGCTCGTTCTCATAAGCGACTATACA
TCTCAACTGACGGATCTGAATATTGAGTTTGGTAAGAACGATCCTCTGGA
GTTATCTGTGTTAAACCACGGAGATTTTTGGTGCAATAACTTTATGTTCA
AGTATAAAAACGCCTCAGAAGTGGAGGACGTTTGCTTTGTTGACTTCCAG
CTCCCAAAATATGGCACACCCGCCCCAGATCTTCTATGCATACTGATGAC
CTCACCTAAGTTTTCAATCAAACTGGACAA
BS07356.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10675-PA | 1230 | CG10675-RA | 1..914 | 17..930 | 4545 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:27:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHKov2-RA | 1450 | CG10675-RA | 58..971 | 17..930 | 4555 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:27:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25330423..25330921 | 688..190 | 2495 | 100 | Minus |
3R | 32079331 | 3R | 25330197..25330372 | 864..689 | 880 | 100 | Minus |
3R | 32079331 | 3R | 25330968..25331146 | 195..17 | 880 | 99.4 | Minus |
3R | 32079331 | 3R | 25330075..25330142 | 930..863 | 325 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:27:04 has no hits.
BS07356.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:10:28 Download gff for
BS07356.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10675-PA | 1..912 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:59:46 Download gff for
BS07356.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10675-PA | 1..912 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:33:22 Download gff for
BS07356.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHKov2-RA | 51..969 | 10..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:34:18 Download gff for
BS07356.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHKov2-RA | 51..969 | 10..928 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:34:18 Download gff for
BS07356.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25330077..25330141 | 864..928 | 98 | <- | Minus |
3R | 25330198..25330372 | 689..863 | 100 | <- | Minus |
3R | 25330423..25330919 | 192..688 | 100 | <- | Minus |
3R | 25330972..25331153 | 10..191 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:33:22 Download gff for
BS07356.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21155799..21155863 | 864..928 | 98 | <- | Minus |
arm_3R | 21155920..21156094 | 689..863 | 100 | <- | Minus |
arm_3R | 21156145..21156641 | 192..688 | 100 | <- | Minus |
arm_3R | 21156694..21156875 | 10..191 | 98 | | Minus |
BS07356.complete Sequence
1262 bp (1262 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635828
> BS07356.complete
GAAGTTATCAGTCGACATGACTGACCAACCAACTCCACAGTGGGTGACCA
AGGAGCTATTCAGCAGCTTGTTGGAACAGAGTAATCGAAATTTCAAGGCG
ATCATTAAATTTGTTCCAACATCAGCGATTAGCAAAGGGGAAAACTATTT
GACGATCGTGCTGCGCATACAAATTGAAATGCAGCTGAAAGATAACAGCA
TAGAAGATGTCAGCTACATACTGAAGATTCCTTTAGTCCCGGAAGATGAG
AAGAACGACTTCCACGAAATGTTCGATGCCGAACTGGACATGTACGATCA
TCTGATACCAGAATTGGAGGATCTATATGCCAAAAACACTTCCATATCAC
CAAAATTCAAGCCTGTTCATCTGAAGTTTCCAGGAGAGCCGGTAAAAAGC
GACTACATTCTTTTGGAGGATCTGCGGAAGAAGGGATATAGGAATGCCGA
CAGAACCCAGGGATTGGAGCAGTTTGAAGTGGAGGCGGTCCTCAAGAAGT
TGGCACAGTGGCACGCAGCCTCTGCAAAAAGAGTAGTCGAGCTGGGTGAA
TACGAGAAGGACATCCGGGAGAGTTACTTTACTACTGAGCACCAGAAATT
ACTCGATGAATTCAACATTAATTTTTGTATGCCCTTCCTGGAGTGCATGC
AGCAATATAATCTTGAGCCAGGACAGCTCGTTCTCATAAGCGACTATACA
TCTCAACTGACGGATCTGAATATTGAGTTTGGTAAGAACGATCCTCTGGA
GTTATCTGTGTTAAACCACGGAGATTTTTGGTGCAATAACTTTATGTTCA
AGTATAAAAACGCCTCAGAAGTGGAGGACGTTTGCTTTGTTGACTTCCAG
CTCCCAAAATATGGCACACCCGCCCAAGATCTTCTATGCATACTGATGAC
CTCACCTAAGTTTTCAATCAAACTGGACAAATTCGACTATTTCATAGAGT
ATTATCACCAGCAGCTAGTCGAACACCTCACTATGCTCAATTACAATCGG
AATGCACCCACACTATCCAAGTTCCACGCCCATCTACACCGATATAGTCT
CTGGGCTTTCATATGCGCCCAGCGAATGCTTCCAATTGTTCTGCTCCCGC
CCGATGTTGATTCACATATAGGCAACGTAATGGGTAATTCGGAGGAGGCG
ATCGCGTTTAAGCGTAAGATGTTCCTGTTGCCGGCTTACGTGGATCAGAT
AAAAGTCATATTGCCATGGCTCATTAACCGGGGTTACATAAGATAGAAGC
TTTCTAGACCAT
BS07356.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:01:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHKov2-RA | 1230 | CG10675-PA | 1..1230 | 17..1246 | 6150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHKov2-RA | 1450 | CG10675-RA | 58..1288 | 17..1247 | 6155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25330423..25330921 | 688..190 | 2495 | 100 | Minus |
3R | 32079331 | 3R | 25329692..25329884 | 1247..1055 | 965 | 100 | Minus |
3R | 32079331 | 3R | 25329950..25330142 | 1055..863 | 965 | 100 | Minus |
3R | 32079331 | 3R | 25330197..25330372 | 864..689 | 880 | 100 | Minus |
3R | 32079331 | 3R | 25330968..25331146 | 195..17 | 880 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:01:51 has no hits.
BS07356.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:24 Download gff for
BS07356.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHKov2-RA | 1..1230 | 17..1246 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:39 Download gff for
BS07356.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHKov2-RA | 50..1287 | 10..1247 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:42:43 Download gff for
BS07356.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHKov2-RA | 58..1287 | 17..1246 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:25 Download gff for
BS07356.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHKov2-RA | 50..1287 | 10..1247 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:44 Download gff for
BS07356.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHKov2-RA | 58..1287 | 17..1246 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:44 Download gff for
BS07356.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25329693..25329883 | 1056..1246 | 100 | <- | Minus |
3R | 25329950..25330141 | 864..1055 | 100 | <- | Minus |
3R | 25330198..25330372 | 689..863 | 100 | <- | Minus |
3R | 25330423..25330919 | 192..688 | 100 | <- | Minus |
3R | 25330972..25331146 | 17..191 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:42:43 Download gff for
BS07356.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21155672..21155863 | 864..1055 | 100 | <- | Minus |
arm_3R | 21155920..21156094 | 689..863 | 100 | <- | Minus |
arm_3R | 21155415..21155605 | 1056..1246 | 100 | <- | Minus |
arm_3R | 21156145..21156641 | 192..688 | 100 | <- | Minus |
arm_3R | 21156694..21156868 | 17..191 | 100 | | Minus |
BS07356.pep Sequence
Translation from 16 to 1245
> BS07356.pep
MTDQPTPQWVTKELFSSLLEQSNRNFKAIIKFVPTSAISKGENYLTIVLR
IQIEMQLKDNSIEDVSYILKIPLVPEDEKNDFHEMFDAELDMYDHLIPEL
EDLYAKNTSISPKFKPVHLKFPGEPVKSDYILLEDLRKKGYRNADRTQGL
EQFEVEAVLKKLAQWHAASAKRVVELGEYEKDIRESYFTTEHQKLLDEFN
INFCMPFLECMQQYNLEPGQLVLISDYTSQLTDLNIEFGKNDPLELSVLN
HGDFWCNNFMFKYKNASEVEDVCFVDFQLPKYGTPAQDLLCILMTSPKFS
IKLDKFDYFIEYYHQQLVEHLTMLNYNRNAPTLSKFHAHLHRYSLWAFIC
AQRMLPIVLLPPDVDSHIGNVMGNSEEAIAFKRKMFLLPAYVDQIKVILP
WLINRGYIR*
BS07356.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHKov2-PA | 409 | CG10675-PA | 1..409 | 1..409 | 2163 | 100 | Plus |
CG10562-PA | 405 | CG10562-PA | 1..401 | 1..406 | 726 | 38.6 | Plus |
CHKov1-PE | 410 | CG10618-PE | 7..405 | 7..406 | 715 | 36.2 | Plus |
CG10560-PA | 414 | CG10560-PA | 16..411 | 5..406 | 700 | 36.6 | Plus |
CG10553-PA | 414 | CG10553-PA | 18..411 | 7..406 | 669 | 35.7 | Plus |