Clone BS07356 Report

Search the DGRC for BS07356

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:73
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCHKov2-RA
Protein status:BS07356.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07356.3prime Sequence

955 bp (889 high quality bases) assembled on 2006-01-06

> BS07356.3prime
ATGGTCTAGAAAGCTTCTATCTTATGTAACCCCGGTTAATGAGCCATGGC
AATATGACTTTTATCTGATCCACGTAAGCCGGCAACAGGAACATCTTACG
CTTAAACGCGATCGCCTCCTCCGAATTACCCATTACGTTGCCTATATGTG
AATCAACATCGGGCGGGAGCAGAACAATTGGAAGCATTCGCTGGGCGCAT
ATGAAAGCCCAGAGACTATATCGGTGTAGATGGGCGTGGAACTTGGATAG
TGTGGGTGCATTCCGATTGTAATTGAGCATAGTGAGGTGTTCGACTAGCT
GCTGGTGATAATACTCTATGAAATAGTCGAATTTGTCCAGTTTGATTGAA
AACTTAGGTGAGGTCATCAGTATGCATAGAAGATCTTGGGCGGGTGTGCC
ATATTTTGGGAGCTGGAAGTCAACAAAGCAAACGTCCTCCACTTCTGAGG
CGTTTTTATACTTGAACATAAAGTTATTGCACCAAAAATCTCCGTGGTTT
AACACAGATAACTCCAGAGGATCGTTCTTACCAAACTCAATATTCAGATC
CGTCAGTTGAGATGTATAGTCGCTTATGAGAACGAGCTGTCCTGGCTCAA
GATTATATTGCTGCATGCACTCCAGGAAGGGCATACAAAAATTAATGTTG
AATTCATCGAGTAATTTCTGGTGCTCAGTAGTAAAGTAACTCTCCCGGAT
GTCCTTCTCGTATTCACCCAGCTCGACTACTCTTTTTGCAGAGGCTGCGT
GCCACTGTGCCAACTTCTTGAGGACCGCCTCCACTTCAAACTGCTCCAAT
CCCTGGGTTCTGTCGGCATTCCTATATCCCTTCTTCCGCAGATCCTCCAA
AAGAATGTAGTCGCTTTTTACCGGCTCTCCTGGAAACTTCAGATGAACAG
GCTTGAATTTTGGTGATATGGGAGTGTTTTTGGCATATAGATCCTCCAAT
TCTGG

BS07356.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG10675-PA 1230 CG10675-RA 292..1230 955..17 4670 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
CHKov2-RA 1450 CG10675-RA 349..1288 955..16 4685 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25330423..25330803 575..955 1890 99.7 Plus
3R 32079331 3R 25329692..25329884 16..208 965 100 Plus
3R 32079331 3R 25329950..25330142 208..400 965 100 Plus
3R 32079331 3R 25330197..25330372 399..574 880 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:59:35 has no hits.

BS07356.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:10:27 Download gff for BS07356.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10675-PA 292..1230 17..955 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:59:45 Download gff for BS07356.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10675-PA 292..1230 17..955 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:06 Download gff for BS07356.3prime
Subject Subject Range Query Range Percent Splice Strand
CHKov2-RA 349..1288 16..955 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:50 Download gff for BS07356.3prime
Subject Subject Range Query Range Percent Splice Strand
CHKov2-RA 349..1288 16..955 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:50 Download gff for BS07356.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25329692..25329883 16..207 100 <- Plus
3R 25329950..25330141 208..399 100 <- Plus
3R 25330198..25330372 400..574 100 <- Plus
3R 25330423..25330803 575..955 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:06 Download gff for BS07356.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21155414..21155605 16..207 100 <- Plus
arm_3R 21155672..21155863 208..399 100 <- Plus
arm_3R 21155920..21156094 400..574 100 <- Plus
arm_3R 21156145..21156525 575..955 99   Plus

BS07356.5prime Sequence

930 bp (807 high quality bases) assembled on 2006-01-06

> BS07356.5prime
GAAGTTATCAGTCGACATGACTGACCAACCAACTCCACAGTGGGTGACCA
AGGAGCTATTCAGCAGCTTGTTGGAACAGAGTAATCGAAATTTCAAGGCG
ATCATTAAATTTGTTCCAACATCAGCGATTAGCAAAGGGGAAAACTATTT
GACGATCGTGCTGCGCATACAAATTGAAATGCAGCTGAAAGATAACAGCA
TAGAAGATGTCAGCTACATACTGAAGATTCCTTTAGTCCCGGAAGATGAG
AAGAACGACTTCCACGAAATGTTCGATGCCGAACTGGACATGTACGATCA
TCTGATACCAGAATTGGAGGATCTATATGCCAAAAACACTTCCATATCAC
CAAAATTCAAGCCTGTTCATCTGAAGTTTCCAGGAGAGCCGGTAAAAAGC
GACTACATTCTTTTGGAGGATCTGCGGAAGAAGGGATATAGGAATGCCGA
CAGAACCCAGGGATTGGAGCAGTTTGAAGTGGAGGCGGTCCTCAAGAAGT
TGGCACAGTGGCACGCAGCCTCTGCAAAAAGAGTAGTCGAGCTGGGTGAA
TACGAGAAGGACATCCGGGAGAGTTACTTTACTACTGAGCACCAGAAATT
ACTCGATGAATTCAACATTAATTTTTGTATGCCCTTCCTGGAGTGCATGC
AGCAATATAATCTTGAGCCAGGACAGCTCGTTCTCATAAGCGACTATACA
TCTCAACTGACGGATCTGAATATTGAGTTTGGTAAGAACGATCCTCTGGA
GTTATCTGTGTTAAACCACGGAGATTTTTGGTGCAATAACTTTATGTTCA
AGTATAAAAACGCCTCAGAAGTGGAGGACGTTTGCTTTGTTGACTTCCAG
CTCCCAAAATATGGCACACCCGCCCCAGATCTTCTATGCATACTGATGAC
CTCACCTAAGTTTTCAATCAAACTGGACAA

BS07356.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG10675-PA 1230 CG10675-RA 1..914 17..930 4545 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
CHKov2-RA 1450 CG10675-RA 58..971 17..930 4555 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25330423..25330921 688..190 2495 100 Minus
3R 32079331 3R 25330197..25330372 864..689 880 100 Minus
3R 32079331 3R 25330968..25331146 195..17 880 99.4 Minus
3R 32079331 3R 25330075..25330142 930..863 325 98.5 Minus
Blast to na_te.dros performed on 2015-02-10 20:27:04 has no hits.

BS07356.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:10:28 Download gff for BS07356.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10675-PA 1..912 17..928 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:59:46 Download gff for BS07356.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10675-PA 1..912 17..928 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:33:22 Download gff for BS07356.5prime
Subject Subject Range Query Range Percent Splice Strand
CHKov2-RA 51..969 10..928 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:34:18 Download gff for BS07356.5prime
Subject Subject Range Query Range Percent Splice Strand
CHKov2-RA 51..969 10..928 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:34:18 Download gff for BS07356.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25330077..25330141 864..928 98 <- Minus
3R 25330198..25330372 689..863 100 <- Minus
3R 25330423..25330919 192..688 100 <- Minus
3R 25330972..25331153 10..191 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:33:22 Download gff for BS07356.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21155799..21155863 864..928 98 <- Minus
arm_3R 21155920..21156094 689..863 100 <- Minus
arm_3R 21156145..21156641 192..688 100 <- Minus
arm_3R 21156694..21156875 10..191 98   Minus

BS07356.complete Sequence

1262 bp (1262 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635828

> BS07356.complete
GAAGTTATCAGTCGACATGACTGACCAACCAACTCCACAGTGGGTGACCA
AGGAGCTATTCAGCAGCTTGTTGGAACAGAGTAATCGAAATTTCAAGGCG
ATCATTAAATTTGTTCCAACATCAGCGATTAGCAAAGGGGAAAACTATTT
GACGATCGTGCTGCGCATACAAATTGAAATGCAGCTGAAAGATAACAGCA
TAGAAGATGTCAGCTACATACTGAAGATTCCTTTAGTCCCGGAAGATGAG
AAGAACGACTTCCACGAAATGTTCGATGCCGAACTGGACATGTACGATCA
TCTGATACCAGAATTGGAGGATCTATATGCCAAAAACACTTCCATATCAC
CAAAATTCAAGCCTGTTCATCTGAAGTTTCCAGGAGAGCCGGTAAAAAGC
GACTACATTCTTTTGGAGGATCTGCGGAAGAAGGGATATAGGAATGCCGA
CAGAACCCAGGGATTGGAGCAGTTTGAAGTGGAGGCGGTCCTCAAGAAGT
TGGCACAGTGGCACGCAGCCTCTGCAAAAAGAGTAGTCGAGCTGGGTGAA
TACGAGAAGGACATCCGGGAGAGTTACTTTACTACTGAGCACCAGAAATT
ACTCGATGAATTCAACATTAATTTTTGTATGCCCTTCCTGGAGTGCATGC
AGCAATATAATCTTGAGCCAGGACAGCTCGTTCTCATAAGCGACTATACA
TCTCAACTGACGGATCTGAATATTGAGTTTGGTAAGAACGATCCTCTGGA
GTTATCTGTGTTAAACCACGGAGATTTTTGGTGCAATAACTTTATGTTCA
AGTATAAAAACGCCTCAGAAGTGGAGGACGTTTGCTTTGTTGACTTCCAG
CTCCCAAAATATGGCACACCCGCCCAAGATCTTCTATGCATACTGATGAC
CTCACCTAAGTTTTCAATCAAACTGGACAAATTCGACTATTTCATAGAGT
ATTATCACCAGCAGCTAGTCGAACACCTCACTATGCTCAATTACAATCGG
AATGCACCCACACTATCCAAGTTCCACGCCCATCTACACCGATATAGTCT
CTGGGCTTTCATATGCGCCCAGCGAATGCTTCCAATTGTTCTGCTCCCGC
CCGATGTTGATTCACATATAGGCAACGTAATGGGTAATTCGGAGGAGGCG
ATCGCGTTTAAGCGTAAGATGTTCCTGTTGCCGGCTTACGTGGATCAGAT
AAAAGTCATATTGCCATGGCTCATTAACCGGGGTTACATAAGATAGAAGC
TTTCTAGACCAT

BS07356.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
CHKov2-RA 1230 CG10675-PA 1..1230 17..1246 6150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:53
Subject Length Description Subject Range Query Range Score Percent Strand
CHKov2-RA 1450 CG10675-RA 58..1288 17..1247 6155 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25330423..25330921 688..190 2495 100 Minus
3R 32079331 3R 25329692..25329884 1247..1055 965 100 Minus
3R 32079331 3R 25329950..25330142 1055..863 965 100 Minus
3R 32079331 3R 25330197..25330372 864..689 880 100 Minus
3R 32079331 3R 25330968..25331146 195..17 880 99.4 Minus
Blast to na_te.dros performed on 2014-11-27 01:01:51 has no hits.

BS07356.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:24 Download gff for BS07356.complete
Subject Subject Range Query Range Percent Splice Strand
CHKov2-RA 1..1230 17..1246 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:39 Download gff for BS07356.complete
Subject Subject Range Query Range Percent Splice Strand
CHKov2-RA 50..1287 10..1247 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:42:43 Download gff for BS07356.complete
Subject Subject Range Query Range Percent Splice Strand
CHKov2-RA 58..1287 17..1246 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:25 Download gff for BS07356.complete
Subject Subject Range Query Range Percent Splice Strand
CHKov2-RA 50..1287 10..1247 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:44 Download gff for BS07356.complete
Subject Subject Range Query Range Percent Splice Strand
CHKov2-RA 58..1287 17..1246 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:44 Download gff for BS07356.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25329693..25329883 1056..1246 100 <- Minus
3R 25329950..25330141 864..1055 100 <- Minus
3R 25330198..25330372 689..863 100 <- Minus
3R 25330423..25330919 192..688 100 <- Minus
3R 25330972..25331146 17..191 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:42:43 Download gff for BS07356.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21155672..21155863 864..1055 100 <- Minus
arm_3R 21155920..21156094 689..863 100 <- Minus
arm_3R 21155415..21155605 1056..1246 100 <- Minus
arm_3R 21156145..21156641 192..688 100 <- Minus
arm_3R 21156694..21156868 17..191 100   Minus

BS07356.pep Sequence

Translation from 16 to 1245

> BS07356.pep
MTDQPTPQWVTKELFSSLLEQSNRNFKAIIKFVPTSAISKGENYLTIVLR
IQIEMQLKDNSIEDVSYILKIPLVPEDEKNDFHEMFDAELDMYDHLIPEL
EDLYAKNTSISPKFKPVHLKFPGEPVKSDYILLEDLRKKGYRNADRTQGL
EQFEVEAVLKKLAQWHAASAKRVVELGEYEKDIRESYFTTEHQKLLDEFN
INFCMPFLECMQQYNLEPGQLVLISDYTSQLTDLNIEFGKNDPLELSVLN
HGDFWCNNFMFKYKNASEVEDVCFVDFQLPKYGTPAQDLLCILMTSPKFS
IKLDKFDYFIEYYHQQLVEHLTMLNYNRNAPTLSKFHAHLHRYSLWAFIC
AQRMLPIVLLPPDVDSHIGNVMGNSEEAIAFKRKMFLLPAYVDQIKVILP
WLINRGYIR*

BS07356.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
CHKov2-PA 409 CG10675-PA 1..409 1..409 2163 100 Plus
CG10562-PA 405 CG10562-PA 1..401 1..406 726 38.6 Plus
CHKov1-PE 410 CG10618-PE 7..405 7..406 715 36.2 Plus
CG10560-PA 414 CG10560-PA 16..411 5..406 700 36.6 Plus
CG10553-PA 414 CG10553-PA 18..411 7..406 669 35.7 Plus