Clone Sequence Records
BS07357.3prime Sequence
815 bp (785 high quality bases) assembled on 2006-01-09
> BS07357.3prime
ATGGTCTAGAAAGCTTTTAGTTTTTAAATATATTTAATAAATAGTCCGGT
ACATCGCTTATGTGTATGGTCTCCGCCAGCCTTGTGTCCCGGCTGCGCAA
CTGCATCAGTCCGTTTCTTAGCGTTTGCTCGTTTATAACAAGTGTATAAG
GTATGCCGAGCATATCCGTTTCCAGCAAGTGCTCTGCTAAATGAGAAGCG
TTCTTCGTCGTACGAATTCCATCCCCTTCAGAAAGTCTAAGACCGGCGTG
GTTGAGAACATGTTTCAGATGCTGACAAAGATCAGACAAGTCAGCAGATA
GCTCGGAATCACTTTCCACACAGGCAATTCCACATTGATATGGCGCCAGA
ACGCGGTGTAAGAGCAGGGATTGCGAGTCCCGGCCATGATCACAGCCATC
CAGAAGCAGAGCGCAGGTGGTAGTTTCCAGCTCTATCACAGACCTTATGA
CAGTCGGTTGCACAATTTCACCCGTTCGCGCATCGGGCAGCCGGAAGTCT
TTGTCGTCCACTATTCTCACCAGGCTCAGTTGCTCCACGGTCACTTCTCC
TGCATCACCGTAGCTCGTGCGGATATCGATGGCTTGATAGTCGTTGGGAT
TGAGATCCTCAGCCAAATCGCAAGGTACGATGCGGTAGCGACTGGGATTC
GAGGAAAGACGCATCCACCAGATCTTGCTCTCACGCTGCATGTTGTAGAA
GTGCTCCAGTGCGCGATGTGGTTCCACTAGGAAGTCCGTGGTTAAATGTA
GCGTAGGACCCTTTATCCCAAATAGGGAATTGCTAGTGGGACCAGAACAA
GTGCTTTGATGTTTC
BS07357.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33650-PA | 1086 | DNApol-gamma35-RA | 288..1086 | 815..17 | 3995 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:07:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33649-RA | 1570 | CG33649-RA | 765..1565 | 815..15 | 4005 | 100 | Minus |
DNApol-gamma35-RA | 1570 | CG33650-RA | 765..1565 | 815..15 | 4005 | 100 | Minus |
Orc5-RA | 1687 | CG7833-RA | 1598..1687 | 15..104 | 450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:06:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13831938..13832341 | 412..815 | 2020 | 100 | Plus |
2L | 23513712 | 2L | 13831487..13831884 | 15..412 | 1990 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 11:07:02 has no hits.
BS07357.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:10:29 Download gff for
BS07357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33650-PA | 288..1086 | 17..815 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:59:47 Download gff for
BS07357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33650-PA | 288..1086 | 17..815 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:32:55 Download gff for
BS07357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DNApol-gamma35-RA | 765..1570 | 13..815 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:42:32 Download gff for
BS07357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DNApol-gamma35-RA | 765..1570 | 13..815 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:42:32 Download gff for
BS07357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13831487..13831883 | 15..411 | 100 | <- | Plus |
2L | 13831938..13832341 | 412..815 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:32:55 Download gff for
BS07357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13831487..13831883 | 15..411 | 100 | <- | Plus |
arm_2L | 13831938..13832341 | 412..815 | 100 | | Plus |
BS07357.5prime Sequence
927 bp (850 high quality bases) assembled on 2006-01-06
> BS07357.5prime
GAAGTTATCAGTCGACATGAGTCGCATACAACGATGCTTTAAGTCCCTGG
CTTCCGCTGGCTTCTTTCGCACCGTGGAAGACAATAAACTGGAGCTACTG
AGTCATGGAAGGGAATACGCCAAACTGTTGCAACAGCATTGGACACGACT
ACGTCCCTTGGCTGCGCACCTGGGCGCCACGAAAGAACCCATAAATCCAG
TCAACATCCAGCGTTTTTCCTTTCCACAAAGCCAGCAATTCCGTAACAAT
TTCCAAAAACTCGTCAAAGATCATCCTCGAAAGGCCAAATGTCCCACTCT
TCTGAAACATCAAAGCACTTGTTCTGGTCCCACTAGCAATTCCCTATTTG
GGATAAAGGGTCCTACGCTACATTTAACCACGGACTTCCTAGTGGAACCA
CATCGCGCACTGGAGCACTTCTACAACATGCAGCGTGAGAGCAAGATCTG
GTGGATGCGTCTTTCCTCGAATCCCAGTCGCTACCGCATCGTACCTTGCG
ATTTGGCTGAGGATCTCAATCCCAACGACTATCAAGCCATCGATATCCGC
ACGAGCTACGGTGATGCAGGAGAAGTGACCGTGGAGCAACTGAGCCTGGT
GAGAATAGTGGACGACAAAGACTTCCGGCTGCCCGATGCGCGAACGGGTG
AAATTGTGCAACCGACTGTCATAAGGTCTGTGATAGAGCTGGAAACTACC
ACCTGCGCTCTGCTTCTGGATGGCTGTGATCATGGCCGGGACTCGCAATC
CCTGCTCTTACACCGCGTTCTGGCGCCATATCAATGTGGAATTGCCTGTG
TGGAAAGTGATTCCGAGCTATCTGCTGACTTGTCTGATCTTTGTCAGCAT
CTGAAACATGTTCTCAACCACGCCGGTCTTAAACTTTCTGAGGGGGATGG
AATTCGTACAACGAAGAACGCTTCTCA
BS07357.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33650-PA | 1086 | DNApol-gamma35-RA | 1..911 | 17..927 | 4480 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:13:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33649-RA | 1570 | CG33649-RA | 478..1388 | 17..927 | 4510 | 99.7 | Plus |
DNApol-gamma35-RA | 1570 | CG33650-RA | 478..1388 | 17..927 | 4510 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:13:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13831938..13832628 | 707..17 | 3455 | 100 | Minus |
2L | 23513712 | 2L | 13831664..13831884 | 927..707 | 1060 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:13:47 has no hits.
BS07357.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:10:30 Download gff for
BS07357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33650-PA | 1..910 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:59:48 Download gff for
BS07357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33650-PA | 1..910 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:23:15 Download gff for
BS07357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DNApol-gamma35-RA | 474..1387 | 10..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:17:30 Download gff for
BS07357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DNApol-gamma35-RA | 474..1387 | 10..926 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:17:30 Download gff for
BS07357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13831665..13831883 | 708..926 | 98 | <- | Minus |
2L | 13831938..13832632 | 10..707 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:23:15 Download gff for
BS07357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13831665..13831883 | 708..926 | 98 | <- | Minus |
arm_2L | 13831938..13832632 | 10..707 | 99 | | Minus |
BS07357.complete Sequence
1118 bp (1118 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635829
> BS07357.complete
GAAGTTATCAGTCGACATGAGTCGCATACAACGATGCTTTAAGTCCCTGG
CTTCCGCTGGCTTCTTTCGCACCGTGGAAGACAATAAACTGGAGCTACTG
AGTCATGGAAGGGAATACGCCAAACTGTTGCAACAGCATTGGACACGACT
ACGTCCCTTGGCTGCGCACCTGGGCGCCACGAAAGAACCCATAAATCCAG
TCAACATCCAGCGTTTTTCCTTTCCACAAAGCCAGCAATTCCGTAACAAT
TTCCAAAAACTCGTCAAAGATCATCCTCGAAAGGCCAAATGTCCCACTCT
TCTGAAACATCAAAGCACTTGTTCTGGTCCCACTAGCAATTCCCTATTTG
GGATAAAGGGTCCTACGCTACATTTAACCACGGACTTCCTAGTGGAACCA
CATCGCGCACTGGAGCACTTCTACAACATGCAGCGTGAGAGCAAGATCTG
GTGGATGCGTCTTTCCTCGAATCCCAGTCGCTACCGCATCGTACCTTGCG
ATTTGGCTGAGGATCTCAATCCCAACGACTATCAAGCCATCGATATCCGC
ACGAGCTACGGTGATGCAGGAGAAGTGACCGTGGAGCAACTGAGCCTGGT
GAGAATAGTGGACGACAAAGACTTCCGGCTGCCCGATGCGCGAACGGGTG
AAATTGTGCAACCGACTGTCATAAGGTCTGTGATAGAGCTGGAAACTACC
ACCTGCGCTCTGCTTCTGGATGGCTGTGATCATGGCCGGGACTCGCAATC
CCTGCTCTTACACCGCGTTCTGGCGCCATATCAATGTGGAATTGCCTGTG
TGGAAAGTGATTCCGAGCTATCTGCTGACTTGTCTGATCTTTGTCAGCAT
CTGAAACATGTTCTCAACCACGCCGGTCTTAGACTTTCTGAAGGGGATGG
AATTCGTACGACGAAGAACGCTTCTCATTTAGCAGAGCACTTGCTGGAAA
CGGATATGCTCGGCATACCTTATACACTTGTTATAAACGAGCAAACGCTA
AGAAACGGACTGATGCAGTTGCGCAGCCGGGACACAAGGCTGGCGGAGAC
CATACACATAAGCGATGTACCGGACTATTTATTAAATATATTTAAAAACT
AAAAGCTTTCTAGACCAT
BS07357.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:56:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DNApol-gamma35-RA | 1086 | CG33650-PA | 1..1086 | 17..1102 | 5430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33649-RA | 1570 | CG33649-RA | 478..1565 | 17..1104 | 5440 | 100 | Plus |
DNApol-gamma35-RA | 1570 | CG33650-RA | 478..1565 | 17..1104 | 5440 | 100 | Plus |
Orc5-RA | 1687 | CG7833-RA | 1598..1687 | 1104..1015 | 450 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13831938..13832628 | 707..17 | 3455 | 100 | Minus |
2L | 23513712 | 2L | 13831487..13831884 | 1104..707 | 1990 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:56:23 has no hits.
BS07357.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:45 Download gff for
BS07357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DNApol-gamma35-RA | 1..1086 | 17..1102 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:53 Download gff for
BS07357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33649-RA | 536..1627 | 10..1104 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:07 Download gff for
BS07357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DNApol-gamma35-RA | 478..1554 | 17..1093 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:45 Download gff for
BS07357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33649-RA | 536..1627 | 10..1104 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:18 Download gff for
BS07357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DNApol-gamma35-RA | 478..1554 | 17..1093 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:18 Download gff for
BS07357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13831498..13831883 | 708..1093 | 100 | <- | Minus |
2L | 13831938..13832628 | 17..707 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:07 Download gff for
BS07357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13831498..13831883 | 708..1093 | 100 | <- | Minus |
arm_2L | 13831938..13832628 | 17..707 | 100 | | Minus |
BS07357.pep Sequence
Translation from 16 to 1101
> BS07357.pep
MSRIQRCFKSLASAGFFRTVEDNKLELLSHGREYAKLLQQHWTRLRPLAA
HLGATKEPINPVNIQRFSFPQSQQFRNNFQKLVKDHPRKAKCPTLLKHQS
TCSGPTSNSLFGIKGPTLHLTTDFLVEPHRALEHFYNMQRESKIWWMRLS
SNPSRYRIVPCDLAEDLNPNDYQAIDIRTSYGDAGEVTVEQLSLVRIVDD
KDFRLPDARTGEIVQPTVIRSVIELETTTCALLLDGCDHGRDSQSLLLHR
VLAPYQCGIACVESDSELSADLSDLCQHLKHVLNHAGLRLSEGDGIRTTK
NASHLAEHLLETDMLGIPYTLVINEQTLRNGLMQLRSRDTRLAETIHISD
VPDYLLNIFKN*
BS07357.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DNApol-gamma35-PA | 361 | CG33650-PA | 1..361 | 1..361 | 1893 | 100 | Plus |