Clone BS07357 Report

Search the DGRC for BS07357

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:73
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptDNApol-gamma35-RA
Protein status:BS07357.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07357.3prime Sequence

815 bp (785 high quality bases) assembled on 2006-01-09

> BS07357.3prime
ATGGTCTAGAAAGCTTTTAGTTTTTAAATATATTTAATAAATAGTCCGGT
ACATCGCTTATGTGTATGGTCTCCGCCAGCCTTGTGTCCCGGCTGCGCAA
CTGCATCAGTCCGTTTCTTAGCGTTTGCTCGTTTATAACAAGTGTATAAG
GTATGCCGAGCATATCCGTTTCCAGCAAGTGCTCTGCTAAATGAGAAGCG
TTCTTCGTCGTACGAATTCCATCCCCTTCAGAAAGTCTAAGACCGGCGTG
GTTGAGAACATGTTTCAGATGCTGACAAAGATCAGACAAGTCAGCAGATA
GCTCGGAATCACTTTCCACACAGGCAATTCCACATTGATATGGCGCCAGA
ACGCGGTGTAAGAGCAGGGATTGCGAGTCCCGGCCATGATCACAGCCATC
CAGAAGCAGAGCGCAGGTGGTAGTTTCCAGCTCTATCACAGACCTTATGA
CAGTCGGTTGCACAATTTCACCCGTTCGCGCATCGGGCAGCCGGAAGTCT
TTGTCGTCCACTATTCTCACCAGGCTCAGTTGCTCCACGGTCACTTCTCC
TGCATCACCGTAGCTCGTGCGGATATCGATGGCTTGATAGTCGTTGGGAT
TGAGATCCTCAGCCAAATCGCAAGGTACGATGCGGTAGCGACTGGGATTC
GAGGAAAGACGCATCCACCAGATCTTGCTCTCACGCTGCATGTTGTAGAA
GTGCTCCAGTGCGCGATGTGGTTCCACTAGGAAGTCCGTGGTTAAATGTA
GCGTAGGACCCTTTATCCCAAATAGGGAATTGCTAGTGGGACCAGAACAA
GTGCTTTGATGTTTC

BS07357.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG33650-PA 1086 DNApol-gamma35-RA 288..1086 815..17 3995 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG33649-RA 1570 CG33649-RA 765..1565 815..15 4005 100 Minus
DNApol-gamma35-RA 1570 CG33650-RA 765..1565 815..15 4005 100 Minus
Orc5-RA 1687 CG7833-RA 1598..1687 15..104 450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13831938..13832341 412..815 2020 100 Plus
2L 23513712 2L 13831487..13831884 15..412 1990 100 Plus
Blast to na_te.dros performed on 2015-02-06 11:07:02 has no hits.

BS07357.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:10:29 Download gff for BS07357.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33650-PA 288..1086 17..815 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:59:47 Download gff for BS07357.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33650-PA 288..1086 17..815 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:32:55 Download gff for BS07357.3prime
Subject Subject Range Query Range Percent Splice Strand
DNApol-gamma35-RA 765..1570 13..815 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:42:32 Download gff for BS07357.3prime
Subject Subject Range Query Range Percent Splice Strand
DNApol-gamma35-RA 765..1570 13..815 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:42:32 Download gff for BS07357.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13831487..13831883 15..411 100 <- Plus
2L 13831938..13832341 412..815 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:32:55 Download gff for BS07357.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13831487..13831883 15..411 100 <- Plus
arm_2L 13831938..13832341 412..815 100   Plus

BS07357.5prime Sequence

927 bp (850 high quality bases) assembled on 2006-01-06

> BS07357.5prime
GAAGTTATCAGTCGACATGAGTCGCATACAACGATGCTTTAAGTCCCTGG
CTTCCGCTGGCTTCTTTCGCACCGTGGAAGACAATAAACTGGAGCTACTG
AGTCATGGAAGGGAATACGCCAAACTGTTGCAACAGCATTGGACACGACT
ACGTCCCTTGGCTGCGCACCTGGGCGCCACGAAAGAACCCATAAATCCAG
TCAACATCCAGCGTTTTTCCTTTCCACAAAGCCAGCAATTCCGTAACAAT
TTCCAAAAACTCGTCAAAGATCATCCTCGAAAGGCCAAATGTCCCACTCT
TCTGAAACATCAAAGCACTTGTTCTGGTCCCACTAGCAATTCCCTATTTG
GGATAAAGGGTCCTACGCTACATTTAACCACGGACTTCCTAGTGGAACCA
CATCGCGCACTGGAGCACTTCTACAACATGCAGCGTGAGAGCAAGATCTG
GTGGATGCGTCTTTCCTCGAATCCCAGTCGCTACCGCATCGTACCTTGCG
ATTTGGCTGAGGATCTCAATCCCAACGACTATCAAGCCATCGATATCCGC
ACGAGCTACGGTGATGCAGGAGAAGTGACCGTGGAGCAACTGAGCCTGGT
GAGAATAGTGGACGACAAAGACTTCCGGCTGCCCGATGCGCGAACGGGTG
AAATTGTGCAACCGACTGTCATAAGGTCTGTGATAGAGCTGGAAACTACC
ACCTGCGCTCTGCTTCTGGATGGCTGTGATCATGGCCGGGACTCGCAATC
CCTGCTCTTACACCGCGTTCTGGCGCCATATCAATGTGGAATTGCCTGTG
TGGAAAGTGATTCCGAGCTATCTGCTGACTTGTCTGATCTTTGTCAGCAT
CTGAAACATGTTCTCAACCACGCCGGTCTTAAACTTTCTGAGGGGGATGG
AATTCGTACAACGAAGAACGCTTCTCA

BS07357.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG33650-PA 1086 DNApol-gamma35-RA 1..911 17..927 4480 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG33649-RA 1570 CG33649-RA 478..1388 17..927 4510 99.7 Plus
DNApol-gamma35-RA 1570 CG33650-RA 478..1388 17..927 4510 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13831938..13832628 707..17 3455 100 Minus
2L 23513712 2L 13831664..13831884 927..707 1060 98.6 Minus
Blast to na_te.dros performed on 2015-02-12 07:13:47 has no hits.

BS07357.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:10:30 Download gff for BS07357.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33650-PA 1..910 17..926 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:59:48 Download gff for BS07357.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33650-PA 1..910 17..926 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:23:15 Download gff for BS07357.5prime
Subject Subject Range Query Range Percent Splice Strand
DNApol-gamma35-RA 474..1387 10..926 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:17:30 Download gff for BS07357.5prime
Subject Subject Range Query Range Percent Splice Strand
DNApol-gamma35-RA 474..1387 10..926 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:17:30 Download gff for BS07357.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13831665..13831883 708..926 98 <- Minus
2L 13831938..13832632 10..707 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:23:15 Download gff for BS07357.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13831665..13831883 708..926 98 <- Minus
arm_2L 13831938..13832632 10..707 99   Minus

BS07357.complete Sequence

1118 bp (1118 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635829

> BS07357.complete
GAAGTTATCAGTCGACATGAGTCGCATACAACGATGCTTTAAGTCCCTGG
CTTCCGCTGGCTTCTTTCGCACCGTGGAAGACAATAAACTGGAGCTACTG
AGTCATGGAAGGGAATACGCCAAACTGTTGCAACAGCATTGGACACGACT
ACGTCCCTTGGCTGCGCACCTGGGCGCCACGAAAGAACCCATAAATCCAG
TCAACATCCAGCGTTTTTCCTTTCCACAAAGCCAGCAATTCCGTAACAAT
TTCCAAAAACTCGTCAAAGATCATCCTCGAAAGGCCAAATGTCCCACTCT
TCTGAAACATCAAAGCACTTGTTCTGGTCCCACTAGCAATTCCCTATTTG
GGATAAAGGGTCCTACGCTACATTTAACCACGGACTTCCTAGTGGAACCA
CATCGCGCACTGGAGCACTTCTACAACATGCAGCGTGAGAGCAAGATCTG
GTGGATGCGTCTTTCCTCGAATCCCAGTCGCTACCGCATCGTACCTTGCG
ATTTGGCTGAGGATCTCAATCCCAACGACTATCAAGCCATCGATATCCGC
ACGAGCTACGGTGATGCAGGAGAAGTGACCGTGGAGCAACTGAGCCTGGT
GAGAATAGTGGACGACAAAGACTTCCGGCTGCCCGATGCGCGAACGGGTG
AAATTGTGCAACCGACTGTCATAAGGTCTGTGATAGAGCTGGAAACTACC
ACCTGCGCTCTGCTTCTGGATGGCTGTGATCATGGCCGGGACTCGCAATC
CCTGCTCTTACACCGCGTTCTGGCGCCATATCAATGTGGAATTGCCTGTG
TGGAAAGTGATTCCGAGCTATCTGCTGACTTGTCTGATCTTTGTCAGCAT
CTGAAACATGTTCTCAACCACGCCGGTCTTAGACTTTCTGAAGGGGATGG
AATTCGTACGACGAAGAACGCTTCTCATTTAGCAGAGCACTTGCTGGAAA
CGGATATGCTCGGCATACCTTATACACTTGTTATAAACGAGCAAACGCTA
AGAAACGGACTGATGCAGTTGCGCAGCCGGGACACAAGGCTGGCGGAGAC
CATACACATAAGCGATGTACCGGACTATTTATTAAATATATTTAAAAACT
AAAAGCTTTCTAGACCAT

BS07357.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
DNApol-gamma35-RA 1086 CG33650-PA 1..1086 17..1102 5430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG33649-RA 1570 CG33649-RA 478..1565 17..1104 5440 100 Plus
DNApol-gamma35-RA 1570 CG33650-RA 478..1565 17..1104 5440 100 Plus
Orc5-RA 1687 CG7833-RA 1598..1687 1104..1015 450 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13831938..13832628 707..17 3455 100 Minus
2L 23513712 2L 13831487..13831884 1104..707 1990 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:56:23 has no hits.

BS07357.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:45 Download gff for BS07357.complete
Subject Subject Range Query Range Percent Splice Strand
DNApol-gamma35-RA 1..1086 17..1102 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:53 Download gff for BS07357.complete
Subject Subject Range Query Range Percent Splice Strand
CG33649-RA 536..1627 10..1104 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:07 Download gff for BS07357.complete
Subject Subject Range Query Range Percent Splice Strand
DNApol-gamma35-RA 478..1554 17..1093 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:45 Download gff for BS07357.complete
Subject Subject Range Query Range Percent Splice Strand
CG33649-RA 536..1627 10..1104 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:18 Download gff for BS07357.complete
Subject Subject Range Query Range Percent Splice Strand
DNApol-gamma35-RA 478..1554 17..1093 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:18 Download gff for BS07357.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13831498..13831883 708..1093 100 <- Minus
2L 13831938..13832628 17..707 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:07 Download gff for BS07357.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13831498..13831883 708..1093 100 <- Minus
arm_2L 13831938..13832628 17..707 100   Minus

BS07357.pep Sequence

Translation from 16 to 1101

> BS07357.pep
MSRIQRCFKSLASAGFFRTVEDNKLELLSHGREYAKLLQQHWTRLRPLAA
HLGATKEPINPVNIQRFSFPQSQQFRNNFQKLVKDHPRKAKCPTLLKHQS
TCSGPTSNSLFGIKGPTLHLTTDFLVEPHRALEHFYNMQRESKIWWMRLS
SNPSRYRIVPCDLAEDLNPNDYQAIDIRTSYGDAGEVTVEQLSLVRIVDD
KDFRLPDARTGEIVQPTVIRSVIELETTTCALLLDGCDHGRDSQSLLLHR
VLAPYQCGIACVESDSELSADLSDLCQHLKHVLNHAGLRLSEGDGIRTTK
NASHLAEHLLETDMLGIPYTLVINEQTLRNGLMQLRSRDTRLAETIHISD
VPDYLLNIFKN*

BS07357.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:49
Subject Length Description Subject Range Query Range Score Percent Strand
DNApol-gamma35-PA 361 CG33650-PA 1..361 1..361 1893 100 Plus