Clone Sequence Records
BS07358.3prime Sequence
937 bp (812 high quality bases) assembled on 2006-01-06
> BS07358.3prime
ATGGTCTAGAAAGCTTTCACGGAATGGGCTGATGCATTTCGAATACAGTG
CGCTCCATGGCGAATGTGCGCTTGGAACGCTGTATGGCGACATTTTCCAT
TGCTTCGTTGAACTCCAGAAGAGCCTTGCTGAATTCCGAATCGCTCTCGA
TCATCCTGAGGAATATGGTCGCCTCGTCCTCAACCTTCGGCTCCATCTCC
TTCTTGGCCTGACCCTTCTTCTTCTTGGCCTCCAGCTTTTCCCTGGACTT
GCGTTCCTCCTCCAAGAAGATGGTGGTCAGGCGCTTCTTCAACTTGATCT
CTTCCTCGCGAGCCTCCAGAAGTTTGCAGCGCTGTATCTCCCGTTCAAAC
ATCGACATCATGAGAGACTTCTCCTTGTTGGTGGCACTTCGCATACCCTC
CTCCAGGCGGAGCATCAGGCAATCGCCGTTGGCCAGGCTCACGGTTAGCA
TTGTTCCATCCGGCTTGAACACCAGATGGGTAACGGCGTACTTGTATTTG
ATGGTGAGAATCGGTCGTTTGTGAGACATCAGCAGGTCCCAAAACTCCAA
GTTGCCCATGTTGTCTCCGATGCAGAACAGCGAGCAGCGTCCCGTGCTCC
AGGCACCGCTCAGCAACTGATTTGGCCGGCGGAAGTAGAAGGTACTGGGG
CAGTTCTTTACTTCCTCCGACCAGATCCGCACCCGCCAATCGCCCACCAC
CAAGAAGTTCTTTACAAAGAACGGATTACGCATTACACAGCGAATGGGAC
CGGCAAAAAGTTGATAGGCAGCAACGATAGTATCCTGCGGAGTGGTGCCC
TTGCGATTGCCTACGAACAAGTAACCCATATCGGTGCAGAATATGAAGCG
CACTGGTATGGTGTACTCCAACTCGAGAAAGTTACGCCATGTGCATCCTG
GCGATTTTGAACTGTCTGGGGGTCCCGGTCGGCCAGC
BS07358.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10859-PA | 1884 | CG10859-RA | 1021..1880 | 880..21 | 4275 | 99.8 | Minus |
| CG10859-PA | 1884 | CG10859-RA | 963..1022 | 937..878 | 250 | 96.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:13:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10859-RB | 1989 | CG10859-RB | 986..1907 | 937..17 | 4525 | 99.5 | Minus |
| CG10859-RA | 2209 | CG10859-RA | 1206..2127 | 937..17 | 4525 | 99.5 | Minus |
| CG1571-RA | 2301 | CG1571-RA | 1283..1501 | 874..656 | 330 | 77.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:13:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13396874..13397459 | 353..937 | 2835 | 99.3 | Plus |
| 2L | 23513712 | 2L | 13396474..13396810 | 17..353 | 1670 | 99.7 | Plus |
| X | 23542271 | X | 8077159..8077377 | 874..656 | 330 | 76.7 | Minus |
Blast to na_te.dros performed on 2015-01-30 14:13:39 has no hits.
BS07358.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:10:31 Download gff for
BS07358.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10859-PA | 963..1884 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:59:50 Download gff for
BS07358.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10859-PA | 963..1884 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:01:00 Download gff for
BS07358.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10859-RA | 1206..2127 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:32:53 Download gff for
BS07358.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10859-RA | 1206..2127 | 17..937 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:32:53 Download gff for
BS07358.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13396474..13396809 | 17..352 | 99 | <- | Plus |
| 2L | 13396874..13397459 | 353..937 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:01:00 Download gff for
BS07358.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13396474..13396809 | 17..352 | 99 | <- | Plus |
| arm_2L | 13396874..13397459 | 353..937 | 99 | | Plus |
BS07358.5prime Sequence
924 bp (806 high quality bases) assembled on 2006-01-06
> BS07358.5prime
GAAGTTATCAGTCGACATGGGAACCTTGGGCAATCAGTTCATCCTCTCGC
GGGAGCGTCGCCGGTTCGGGAGGCAGTGCCTCTTCACAGACCGCAACGAG
ATGATCCTCAGTGTGCAGCCGAGTGGACGGTTGCGCCTCAAGTACATACT
GCGCAATCCGATCAACGAACGGACCCAGCTGAGCGAACAGTATGCAGCAT
CTTCAGTGTTGACACACAACGTGACCCTGGATTCCCATGGCTTGAATCAC
TACGAAGGCGGCTGGAACGTCAAGGAGGTGAACATTATGGACGAGGAGTC
CACAATGCGCTATCGCAAAAAAGTCGAGCGTGATGACTCCTGGGGCATCG
AGGTGAACCAATTGATGCACGCCGCAATGGACATCAGTTCGGCCAACAAT
GCTGTCAACATCTACGAGGACTTCTTTGTGGATCTACCGGAGGATTTGGG
CCGCGGCATCAGCATGAAGATCGCTGCCAGGGGTACCCATGTCTTTCATG
ATCTGTGGATCCCATCGCGTAGGCTGATGACGTGCGAATGGCTAAACAAC
GATCCCAATCAGTTTCTCCTGTTCTATTCCAATCGAATGAGCCTGACACC
GGACTACACAAAACAGCTAAACACGCTGCCCGATTTTGGCAACGATAATC
CGCATGCATTCTACATTTGGAACTTGGATGATGCCACCCGACCGGCTGCC
CATTACGATTCTAGGAGAGTCGTACGGGTTGCCAAGGTGTGCCTGCGGGA
TGAGAGCTACATGGTGGGTGGACTACAGGAGGGTCAGGTCGGCTTCTGGC
TAACCGAGAACCAGGGTGGTCCCAAGAGCATGTGTCCCCTGGAGGCGTGT
CATCGCGAGGCCACAACGGCCATCTGCTGGGTGCACTCGAAACTCACCAC
TGAGTTTTACTCANGATCACTGGA
BS07358.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10859-PA | 1884 | CG10859-RA | 1..908 | 17..924 | 4496 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:23:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10859-RB | 1989 | CG10859-RB | 24..931 | 17..924 | 4514 | 99.8 | Plus |
| CG10859-RA | 2209 | CG10859-RA | 244..1151 | 17..924 | 4514 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:23:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13397514..13398421 | 924..17 | 4514 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:23:12 has no hits.
BS07358.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:10:32 Download gff for
BS07358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10859-PA | 1..907 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:59:51 Download gff for
BS07358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10859-PA | 1..907 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:32:28 Download gff for
BS07358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10859-RA | 244..1150 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:19:37 Download gff for
BS07358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10859-RA | 244..1150 | 17..923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:19:37 Download gff for
BS07358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13397515..13398421 | 17..923 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:32:28 Download gff for
BS07358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13397515..13398421 | 17..923 | 99 | | Minus |
BS07358.complete Sequence
1916 bp assembled on 2010-05-10
GenBank Submission: KX802030
> BS07358.complete
GAAGTTATCAGTCGACATGGGAACCTTGGGCAATCAGTTCATCCTCTCGC
GGGAGCGTCGCCGGTTCGGGAGGCAGTGCCTCTTCACAGACCGCAACGAG
ATGATCCTCAGTGTGCAGCCGAGTGGACGGTTGCGCCTCAAGTACATACT
GCGCAATCCGATCAACGAACGGACCCAGCTGAGCGAACAGTATGCAGCAT
CTTCAGTGTTGACACACAACGTGACCCTGGATTCCCATGGCTTGAATCAC
TACGAAGGCGGCTGGAACGTCAAGGAGGTGAACATTATGGACGAGGAGTC
CACAATGCGCTATCGCAAAAAAGTCGAGCGTGATGACTCCTGGGGCATCG
AGGTGAACCAATTGATGCACGCCGCAATGGACATCAGTTCGGCCAACAAT
GCTGTCAACATCTACGAGGACTTCTTTGTGGATCTACCGGAGGATTTGGG
CCGCGGCATCAGCATGAAGATCGCTGCCAGGGGTACCCATGTCTTTCATG
ATCTGTGGATCCCATCGCGTAGGCTGATGACGTGCGAATGGCTAAACAAC
GATCCCAATCAGTTTCTCCTGTTCTATTCCAATCGAATGAGCCTGACACC
GGACTACACAAAACAGCTAAACACGCTGCCCGATTTTGGCAACGATAATC
CGCATGCATTCTACATTTGGAACTTGGATGATGCCACCCGACCGGCTGCC
CATTACGATTCTAGGAGAGTCGTACGGGTTGCCAAGGTGTGCCTGCGGGA
TGAGAGCTACATGGTGGGTGGACTACAGGAGGGTCAGGTCGGCTTCTGGC
TAACCGAGAACCAGGGTGGTCCCAAGAGCATGTGTCCCCTGGAGGCGTGT
CATCGCGAGGCCACAACGGCCATCTGCTGGGTGCACTCGAAACTCAACAC
TGAGTTTTACTCAGGATCACTGGATGGGTCCATCAAGTACTGGGATACCC
GGGATCTTCTTATGCCGGTTCATGAGGTGCTGGCCGAACCGGACCCCCAG
ACAGTTCAAAATCGCCAGGATGCACATGGCGTAACTTTTCTCGAGTTCGA
GTACACCATACCAGTGCGCTTCATATTCTGCACCGATATGGGTTACTTGT
TCGTAGGCAATCGCAAGGGCACCACTCCGCAGGATACTATCGTTGCTGCC
TATCAACTTTTTGCCGGTCCCATTCGCTGTGTAATGCGTAATCCGTTCTT
TGTAAAGAACTTCTTGGTGGTGGGCGATTGGCGGGTGCGGATCTGGTCGG
AGGAAGTAAAGAACTGCCCCAGTACCTTCTACTTCCGCCGGCCAAATCAG
TTGCTGAGCGGTGCCTGGAGCACGGGACGCTGCTCGCTGTTCTGCATCGG
AGACAACATGGGCAACTTGGAGTTTTGGGACCTGCTGATGTCTCACAAAC
GACCGATTCTCACCATCAAATACAAGTACGCCGTTACCCATCTGGTGTTC
AAGCCGGATGGAACAATGCTAACCGTGAGCCTGGCCAACGGCGATTGCCT
GATGCTCCGCCTGGAGGAGGGTATGCGAAGTGCCACCAACAAGGAGAAGT
CTCTCATGATGTCGATGTTTGAACGGGAGATACAGCGCTGCAAACTTCTG
GAGGCTCGCGAGGAAGAGATCAAGTTGAAGAAGCGCCTGACCACCATCTT
CTTGGAGGAGGAACGCAAGTCCAGGGAAAAGCTGGAGGCCAAGAAGAAGA
AGGGTCAGGCCAAGAAGGAGATGGAGCCGAAGGTTGAGGACGAGGCGACC
ATATTCCTCAGGATGATCGAGAGCGATTCGGAATTCAGCAAGGCTCTTCT
GGAGTTCAACGAAGCAATGGAAAATGTCGCCATACAGCGTTCCAAGCGCA
CATTCGCCATGGAGCGCACTGTATTCGAAATGCATCAGCCCATTCCTTGA
AAGCTTTCTAGACCAT
BS07358.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:42:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10859-RB | 1884 | CG10859-PB | 1..1884 | 17..1900 | 9420 | 100 | Plus |
| CG10859-RA | 1884 | CG10859-PA | 1..1884 | 17..1900 | 9420 | 100 | Plus |
| CG1571-RA | 1956 | CG1571-PA | 799..1224 | 836..1261 | 450 | 73.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:42:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10859-RB | 1989 | CG10859-RB | 24..1907 | 17..1900 | 9420 | 100 | Plus |
| CG10859-RA | 2209 | CG10859-RA | 244..2127 | 17..1900 | 9420 | 100 | Plus |
| CG1571-RA | 2301 | CG1571-RA | 1076..1501 | 836..1261 | 450 | 73.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:42:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13396874..13398421 | 1564..17 | 7740 | 100 | Minus |
| 2L | 23513712 | 2L | 13396474..13396810 | 1900..1564 | 1685 | 100 | Minus |
| X | 23542271 | X | 8076952..8077377 | 836..1261 | 450 | 73.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:42:56 has no hits.
BS07358.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:03 Download gff for
BS07358.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10859-RA | 244..2126 | 17..1899 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:45 Download gff for
BS07358.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10859-RA | 244..2126 | 17..1899 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:37 Download gff for
BS07358.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10859-RA | 244..2126 | 17..1899 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:37 Download gff for
BS07358.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13396475..13396809 | 1565..1899 | 100 | <- | Minus |
| 2L | 13396874..13398421 | 17..1564 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:45 Download gff for
BS07358.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13396475..13396809 | 1565..1899 | 100 | <- | Minus |
| arm_2L | 13396874..13398421 | 17..1564 | 100 | | Minus |
BS07358.pep Sequence
Translation from 16 to 1899
> BS07358.pep
MGTLGNQFILSRERRRFGRQCLFTDRNEMILSVQPSGRLRLKYILRNPIN
ERTQLSEQYAASSVLTHNVTLDSHGLNHYEGGWNVKEVNIMDEESTMRYR
KKVERDDSWGIEVNQLMHAAMDISSANNAVNIYEDFFVDLPEDLGRGISM
KIAARGTHVFHDLWIPSRRLMTCEWLNNDPNQFLLFYSNRMSLTPDYTKQ
LNTLPDFGNDNPHAFYIWNLDDATRPAAHYDSRRVVRVAKVCLRDESYMV
GGLQEGQVGFWLTENQGGPKSMCPLEACHREATTAICWVHSKLNTEFYSG
SLDGSIKYWDTRDLLMPVHEVLAEPDPQTVQNRQDAHGVTFLEFEYTIPV
RFIFCTDMGYLFVGNRKGTTPQDTIVAAYQLFAGPIRCVMRNPFFVKNFL
VVGDWRVRIWSEEVKNCPSTFYFRRPNQLLSGAWSTGRCSLFCIGDNMGN
LEFWDLLMSHKRPILTIKYKYAVTHLVFKPDGTMLTVSLANGDCLMLRLE
EGMRSATNKEKSLMMSMFEREIQRCKLLEAREEEIKLKKRLTTIFLEEER
KSREKLEAKKKKGQAKKEMEPKVEDEATIFLRMIESDSEFSKALLEFNEA
MENVAIQRSKRTFAMERTVFEMHQPIP*
BS07358.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:11:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10859-PB | 627 | CG10859-PB | 1..627 | 1..627 | 3329 | 100 | Plus |
| CG10859-PA | 627 | CG10859-PA | 1..627 | 1..627 | 3329 | 100 | Plus |
| CG1571-PA | 651 | CG1571-PA | 4..608 | 6..625 | 1778 | 54.8 | Plus |
| CG6053-PB | 576 | CG6053-PB | 2..518 | 7..538 | 751 | 32.6 | Plus |
| CG6053-PC | 585 | CG6053-PC | 2..518 | 7..538 | 751 | 32.6 | Plus |
