Clone Sequence Records
BS07359.3prime Sequence
949 bp (859 high quality bases) assembled on 2006-01-06
> BS07359.3prime
ATGGTCTAGAAAGCTTCTAAATGTCATCCGGAGGTATGGCGACAGCGTAG
ATGGCGAATCCGATGAACACAATGCCACCCACAATGGTGACAGTGCGCAC
TGAGATTTTGGAAGCCACGAGACGACCACCAATCACAGCCAGGCCGGTGC
AGATGCAGTGGCCAATAATACCGCCAGCGATAACGCCGTAAACGTCCTTG
CTAGCGGCGAGAATAATGGTGGTCAGTTGGGAGCGATCGCCCCACTCGGC
CAGGAACGTCATTGTGAAGGCCTGGGCCAGGATGCGCATGGTGAAGTAGG
TGGCACCCCGTTTCTGTGGACGACGACGACCGCTCTCGGCGTCATTCACC
AGCGCCGCGTTCACATCACGATCCAGCTCATCCTCGCGCTTGCGCAGATC
AGTTTGCACCTCTTCCAGTTCTTCCTGAGCGTCGGTTGGTTTCATTTTGT
AGCCGTCGTACAGCATTTTTAAACCAAATATTAAAAATAATGCAGTTGAG
ATATAATACGTATAAATCTTAGGAATAAAGTTCGCTGCCATGCCAAATGC
GCATGAGAGTACCGTCATTAGCGCCAAGGCGGCGATGGCACCGCCAAAGA
CAATCAAACGCGGATGGCGCATGGCCATTATGGCAGCGATAAAGAAAGTC
TTATCCCCTAGCTCTGTTAGTAAGATAACAGAGATCGATGCGGTAAACGC
ATCGATAAAGGTGCCCTTCGTTTTCGGCCGGTCCGCAGCATCTTTTGGTT
TCTCCGCTAAAGAACTCAGATCCGTTGGCCTATTCAAATCTCCCTGCACG
TCCAAGTTGCTCTGTATTCCGGATTCAATGACCGCATTGTCCGCACTATC
CGGTTGAGCTTCCGCCGCACAAATTGTGCCGAATGTGAGCACCACCATCA
GGGCCCAGCGCATGTGCCATTTTGCCGAGCGCTTCAAGTATACATTGTG
BS07359.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4196-PC | 972 | CG4196-RC | 84..972 | 905..17 | 4445 | 100 | Minus |
| CG4196-PB | 972 | CG4196-RB | 84..972 | 905..17 | 4445 | 100 | Minus |
| CG4196-PC | 972 | CG4196-RC | 40..78 | 949..911 | 145 | 94.8 | Minus |
| CG4196-PB | 972 | CG4196-RB | 40..78 | 949..911 | 145 | 94.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:37:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42542-RF | 2063 | CG42542-RF | 502..1434 | 949..17 | 4590 | 99.6 | Minus |
| CG42542-RC | 1675 | CG42542-RC | 211..1143 | 949..17 | 4590 | 99.6 | Minus |
| CG42542-RB | 1650 | CG42542-RB | 186..1118 | 949..17 | 4590 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:37:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15199214..15199504 | 808..518 | 1455 | 100 | Minus |
| 3R | 32079331 | 3R | 15202022..15202204 | 378..196 | 915 | 100 | Minus |
| 3R | 32079331 | 3R | 15202264..15202445 | 198..17 | 910 | 100 | Minus |
| 3R | 32079331 | 3R | 15199568..15199710 | 519..377 | 715 | 100 | Minus |
| 3R | 32079331 | 3R | 15199010..15199150 | 949..809 | 600 | 95 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:37:53 has no hits.
BS07359.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:10:33 Download gff for
BS07359.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4196-PC | 40..972 | 17..949 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:59:52 Download gff for
BS07359.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4196-PB | 40..972 | 17..949 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:45:36 Download gff for
BS07359.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42542-RB | 186..1120 | 13..949 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:15:44 Download gff for
BS07359.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42542-RB | 186..1120 | 13..949 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:15:44 Download gff for
BS07359.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15199010..15199150 | 809..949 | 97 | -> | Minus |
| 3R | 15199214..15199504 | 518..808 | 100 | -> | Minus |
| 3R | 15199570..15199710 | 377..517 | 100 | -> | Minus |
| 3R | 15202024..15202203 | 197..376 | 100 | -> | Minus |
| 3R | 15202266..15202447 | 13..196 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:45:36 Download gff for
BS07359.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11027988..11028169 | 13..196 | 98 | | Minus |
| arm_3R | 11024732..11024872 | 809..949 | 97 | -> | Minus |
| arm_3R | 11024936..11025226 | 518..808 | 100 | -> | Minus |
| arm_3R | 11025292..11025432 | 377..517 | 100 | -> | Minus |
| arm_3R | 11027746..11027925 | 197..376 | 100 | -> | Minus |
BS07359.5prime Sequence
916 bp (830 high quality bases) assembled on 2006-01-06
> BS07359.5prime
GAAGTTATCAGTCGACATGTCACAAAACCAATCCTACTTCTGGCAAACGA
CCAGACACAATGTATACCTGAAGCGCTCGGCCAAATGGCACATGGCGCTG
GCCCTGATGGTGGTGCTCACATTCGGCACAATTTGTGCGGCGGAAGCTCA
ACCGGATAGTGCGGACAATGCGGTCATTGAATCCGGAATACAGAGCAACT
TGGACGTGCAGGGAGATTTGAATAGGCCAACGGATCTGAGTTCTTTAGCG
GAGAAACCAAAAGATGCTGCGGACCGGCCGAAAACGAAGGGCACCTTTAT
CGATGCGTTTACCGCATCGATCTCTGTTATCTTACTAACAGAGCTAGGGG
ATAAGACTTTCTTTATCGCTGCCATAATGGCCATGCGCCATCCGCGTTTG
ATTGTCTTTGGCGGTGCCATCGCCGCCTTGGCGCTAATGACGGTACTCTC
ATGCGCATTTGGCATGGCAGCGAACTTTATTCCTAAGATTTATACGTATT
ATATCTCAACTGCATTATTTTTAATATTTGGTTTAAAAATGCTGTACGAC
GGCTACAAAATGAAACCAACCGACGCTCAGGAAGAACTGGAAGAGGTGCA
AACTGATCTGCGCAAGCGCGAGGATGAGCTGGATCGTGATGTGAACGCGG
CGCTGGTGAATGACGCCGAGAGCGGTCGTCGTCGTCCACAGAAACGGGGT
GCCACCTACTTCACCATGCGCATCCTGGCCCAGGCCTTCACAATGACGTT
CCTGGCCGAGTGGGGCGATCGCTCCCAACTGACCACCATTATTCTCGCCG
CTAGCAAGGACGTTTACGGCGTTATCGCTGGCGGTATTATTGGCCACTGC
ATCTGCACCGGCCTGGCTGTGATTGGTGGTCGTCTCGTGGCTTCCAAAAT
CTCAGTGCGCACTGTC
BS07359.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4196-PC | 972 | CG4196-RC | 1..900 | 17..916 | 4500 | 100 | Plus |
| CG4196-PB | 972 | CG4196-RB | 1..900 | 17..916 | 4500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:32:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42542-RF | 2063 | CG42542-RF | 463..1362 | 17..916 | 4500 | 100 | Plus |
| CG42542-RC | 1675 | CG42542-RC | 172..1071 | 17..916 | 4500 | 100 | Plus |
| CG42542-RB | 1650 | CG42542-RB | 147..1046 | 17..916 | 4500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:32:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15199214..15199504 | 197..487 | 1455 | 100 | Plus |
| 3R | 32079331 | 3R | 15202022..15202204 | 627..809 | 915 | 100 | Plus |
| 3R | 32079331 | 3R | 15198971..15199150 | 17..196 | 900 | 100 | Plus |
| 3R | 32079331 | 3R | 15199568..15199710 | 486..628 | 715 | 100 | Plus |
| 3R | 32079331 | 3R | 15202264..15202373 | 807..916 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:32:35 has no hits.
BS07359.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:10:34 Download gff for
BS07359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4196-PC | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:59:54 Download gff for
BS07359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4196-PB | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:16:45 Download gff for
BS07359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42542-RB | 139..1046 | 9..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:49:17 Download gff for
BS07359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42542-RB | 139..1046 | 9..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:49:17 Download gff for
BS07359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15202024..15202203 | 629..808 | 100 | -> | Plus |
| 3R | 15202266..15202373 | 809..916 | 100 | | Plus |
| 3R | 15199570..15199710 | 488..628 | 100 | -> | Plus |
| 3R | 15198963..15199150 | 9..196 | 98 | -> | Plus |
| 3R | 15199214..15199504 | 197..487 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:16:45 Download gff for
BS07359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11024685..11024872 | 9..196 | 98 | -> | Plus |
| arm_3R | 11024936..11025226 | 197..487 | 100 | -> | Plus |
| arm_3R | 11025292..11025432 | 488..628 | 100 | -> | Plus |
| arm_3R | 11027746..11027925 | 629..808 | 100 | -> | Plus |
| arm_3R | 11027988..11028095 | 809..916 | 100 | | Plus |
BS07359.complete Sequence
1004 bp (1004 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635830
> BS07359.complete
GAAGTTATCAGTCGACATGTCACAAAACCAATCCTACTTCTGGCAAACGA
CCAGACACAATGTATACCTGAAGCGCTCGGCCAAATGGCACATGGCGCTG
GCCCTGATGGTGGTGCTCACATTCGGCACAATTTGTGCGGCGGAAGCTCA
ACCGGATAGTGCGGACAATGCGGTCATTGAATCCGGAATACAGAGCAACT
TGGACGTGCAGGGAGATTTGAATAGGCCAACGGATCTGAGTTCTTTAGCG
GAGAAACCAAAAGATGCTGCGGACCGGCCGAAAACGAAGGGCACCTTTAT
CGATGCGTTTACCGCATCGATCTCTGTTATCTTACTAACAGAGCTAGGGG
ATAAGACTTTCTTTATCGCTGCCATAATGGCCATGCGCCATCCGCGTTTG
ATTGTCTTTGGCGGTGCCATCGCCGCCTTGGCGCTAATGACGGTACTCTC
ATGCGCATTTGGCATGGCAGCGAACTTTATTCCTAAGATTTATACGTATT
ATATCTCAACTGCATTATTTTTAATATTTGGTTTAAAAATGCTGTACGAC
GGCTACAAAATGAAACCAACCGACGCTCAGGAAGAACTGGAAGAGGTGCA
AACTGATCTGCGCAAGCGCGAGGATGAGCTGGATCGTGATGTGAACGCGG
CGCTGGTGAATGACGCCGAGAGCGGTCGTCGTCGTCCACAGAAACGGGGT
GCCACCTACTTCACCATGCGCATCCTGGCCCAGGCCTTCACAATGACGTT
CCTGGCCGAGTGGGGCGATCGCTCCCAACTGACCACCATTATTCTCGCCG
CTAGCAAGGACGTTTACGGCGTTATCGCTGGCGGTATTATTGGCCACTGC
ATCTGCACCGGCCTGGCTGTGATTGGTGGTCGTCTCGTGGCTTCCAAAAT
CTCAGTGCGCACTGTCACCATTGTGGGTGGCATTGTGTTCATCGGATTCG
CCATCTACGCTGTCGCCATACCTCCGGATGACATTTAGAAGCTTTCTAGA
CCAT
BS07359.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:43:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42542-RF | 972 | CG42542-PF | 1..972 | 17..988 | 4860 | 100 | Plus |
| CG42542-RC | 972 | CG42542-PC | 1..972 | 17..988 | 4860 | 100 | Plus |
| CG42542-RB | 972 | CG42542-PB | 1..972 | 17..988 | 4860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:43:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42542-RF | 2063 | CG42542-RF | 463..1434 | 17..988 | 4860 | 100 | Plus |
| CG42542-RC | 1675 | CG42542-RC | 172..1143 | 17..988 | 4860 | 100 | Plus |
| CG42542-RB | 1650 | CG42542-RB | 147..1118 | 17..988 | 4860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:43:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15199214..15199504 | 197..487 | 1455 | 100 | Plus |
| 3R | 32079331 | 3R | 15202022..15202204 | 627..809 | 915 | 100 | Plus |
| 3R | 32079331 | 3R | 15202264..15202445 | 807..988 | 910 | 100 | Plus |
| 3R | 32079331 | 3R | 15198971..15199150 | 17..196 | 900 | 100 | Plus |
| 3R | 32079331 | 3R | 15199568..15199710 | 486..628 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:43:20 has no hits.
BS07359.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:11 Download gff for
BS07359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4196-RB | 1..972 | 17..988 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:21 Download gff for
BS07359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4196-RB | 183..1164 | 9..992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:07 Download gff for
BS07359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42542-RB | 147..1118 | 17..988 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:11 Download gff for
BS07359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4196-RB | 183..1164 | 9..992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:26 Download gff for
BS07359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42542-RB | 147..1118 | 17..988 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:26 Download gff for
BS07359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15198971..15199150 | 17..196 | 100 | -> | Plus |
| 3R | 15199214..15199504 | 197..487 | 100 | -> | Plus |
| 3R | 15199570..15199710 | 488..628 | 100 | -> | Plus |
| 3R | 15202024..15202203 | 629..808 | 100 | -> | Plus |
| 3R | 15202266..15202445 | 809..988 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:07 Download gff for
BS07359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11024693..11024872 | 17..196 | 100 | -> | Plus |
| arm_3R | 11024936..11025226 | 197..487 | 100 | -> | Plus |
| arm_3R | 11025292..11025432 | 488..628 | 100 | -> | Plus |
| arm_3R | 11027746..11027925 | 629..808 | 100 | -> | Plus |
| arm_3R | 11027988..11028167 | 809..988 | 100 | | Plus |
BS07359.pep Sequence
Translation from 16 to 987
> BS07359.pep
MSQNQSYFWQTTRHNVYLKRSAKWHMALALMVVLTFGTICAAEAQPDSAD
NAVIESGIQSNLDVQGDLNRPTDLSSLAEKPKDAADRPKTKGTFIDAFTA
SISVILLTELGDKTFFIAAIMAMRHPRLIVFGGAIAALALMTVLSCAFGM
AANFIPKIYTYYISTALFLIFGLKMLYDGYKMKPTDAQEELEEVQTDLRK
REDELDRDVNAALVNDAESGRRRPQKRGATYFTMRILAQAFTMTFLAEWG
DRSQLTTIILAASKDVYGVIAGGIIGHCICTGLAVIGGRLVASKISVRTV
TIVGGIVFIGFAIYAVAIPPDDI*
BS07359.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42542-PF | 323 | CG42542-PF | 1..323 | 1..323 | 1633 | 100 | Plus |
| CG42542-PC | 323 | CG4196-PB | 1..323 | 1..323 | 1633 | 100 | Plus |
| CG42542-PB | 323 | CG4196-PC | 1..323 | 1..323 | 1633 | 100 | Plus |
| CG42542-PD | 503 | CG42542-PD | 1..221 | 1..222 | 1046 | 94.6 | Plus |
| CG42542-PE | 503 | CG42542-PE | 1..221 | 1..222 | 1046 | 94.6 | Plus |
| CG42542-PD | 503 | CG42542-PD | 385..503 | 205..323 | 597 | 100 | Plus |
