Clone Sequence Records
BS07363.3prime Sequence
920 bp (878 high quality bases) assembled on 2006-01-06
> BS07363.3prime
ATGGTCTAGAAAGCTTCTACTCAATGTAGATGTCCTCGATGGGATAAGCG
GTTTCAATGAATTTCTGATAGAATCGCTGGAAAGCACGGCCCACTGCCTC
GGCCACCGGTCTGGTCGACTCCGAGCCCTTGAAGACGTGGCAGGCGAACC
GCTGAACCGTGGGATGTTTGGTGATGAAGCCAATGAAGCGGTGATCGCGA
GGGTGAAATGCGCAGAAGGAGACGTTCTTCAGGGAGTAGAAGTAGTCGAT
GCAAGGTTTCTTGTCCTTTTTGTTTTGATTCGGGCCCGATCGATCCACCA
TGCGAAGTCCCTGGTCGGAAACCTCCAGGATGCACGTCTGTCCGGTCGGT
GAGTTGCCGTACTCCCCGACAATCTTGCGCACCGCCTGGCAAACGACTCC
GGTGCCCTTGTGCGCCAGCGTCTCCACGGATCCGAGGTAGCCCAGCAGAT
AGCGCTCCTTCTTCACCAGCTGCACTGTGGGATCGAACTCGTTGTAGTCC
AGGTCCACGGCGTAGGCCGAGGGGAAGATGCCCTGCCTTCCGGTGCGGAG
ATTCACACCCTCGCACCACAGGTCCTCGGCCTCCTTTTGCACGTAGATGG
CGTCGCCGATCTCCAGCTCGATCTCGTCGTGGTGCCGCGGCACAAACTTG
TGCAGACCACGGTGAGTGGCCTCCAGCATCTCCAGCTGGCCAAAGGGCAC
GCCCCCAAAGGGAGGCGGAAAGGGGGACTGCGAAACGGGAGACGTGATCT
GCGGCGACATGCTCTTAAAGTCGTTGGGCGAATGCGCCGTGCTGTGACCA
CTGTCCACGTCGCCCAGACTCTGCATCCTTTCCGAATCCGGACTGGAGTC
CTCGTCCCATCAGTAGCCGCATTTGAGGGACAGAAATGAGCGCTGTTGTC
CACTGCGAACTGCTGGAGGG
BS07363.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1200-PA | 1452 | Aplip1-RA | 612..1452 | 857..17 | 4205 | 100 | Minus |
CG1200-PB | 1473 | Aplip1-RB | 633..1473 | 857..17 | 4205 | 100 | Minus |
CG1200-PA | 1452 | Aplip1-RA | 549..607 | 920..862 | 295 | 100 | Minus |
CG1200-PB | 1473 | Aplip1-RB | 570..628 | 920..862 | 295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:13:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aplip1-RB | 2411 | CG1200-RB | 796..1699 | 920..17 | 4475 | 99.8 | Minus |
Aplip1-RA | 2390 | CG1200-RA | 775..1678 | 920..17 | 4475 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:13:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1197588..1198230 | 920..278 | 3155 | 99.4 | Minus |
3L | 28110227 | 3L | 1198299..1198486 | 277..90 | 940 | 100 | Minus |
3L | 28110227 | 3L | 1198554..1198627 | 90..17 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 16:13:53 has no hits.
BS07363.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:10:41 Download gff for
BS07363.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1200-PA | 549..1452 | 17..920 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:00:05 Download gff for
BS07363.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1200-PB | 570..1473 | 17..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:21:54 Download gff for
BS07363.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aplip1-RA | 775..1687 | 6..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:40:50 Download gff for
BS07363.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aplip1-RA | 775..1687 | 6..920 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:40:50 Download gff for
BS07363.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1197588..1198230 | 278..920 | 99 | -> | Minus |
3L | 1198299..1198486 | 90..277 | 100 | -> | Minus |
3L | 1198555..1198636 | 6..89 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:21:54 Download gff for
BS07363.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1197588..1198230 | 278..920 | 99 | -> | Minus |
arm_3L | 1198299..1198486 | 90..277 | 100 | -> | Minus |
arm_3L | 1198555..1198636 | 6..89 | 95 | | Minus |
BS07363.5prime Sequence
927 bp (777 high quality bases) assembled on 2006-01-06
> BS07363.5prime
GAAGTTATCAGTCGACATGGCCGACAGCGAATTCGAGGAGTTCCACAGGC
CCATATTTGAGCCACATACGATTGCTGGATTCGGATCAGGAGCAGGCAGC
AAGAAGAATAATCCACATGCATTTTACTCCTTAATTCCCAACGATGACCT
GGAGGACTCGCACTCCTCGAAGAGCGATGGCGACGGTTCGGATCAGGAGG
ATGGCATTGGTCTTGTGGATCACGAGCCCAAGATGCGTCAAGTGGAGGAC
GATGAGCTGGGCGACGGGCTGAAAGTCACTCTGTCCTCGGACGGCTCGCT
GGACACCAACGACTCGTTTAATTCGCACCGACATCATCCGTTGAACCACC
AGGATGCGATTGGTGGCTTCCTGGGCATGGACACCAGTGGATTGGGTGGC
AATAGTGCACCTGTGACCATTGGAGCCAGCACAGATCTGCTGGCACCCAA
TACAGCTGCCACGCGACGTCGTCGCAAGTTGCCGGAAATACCGAAAAACA
AGAAATCTTCCATTCTGCATCTTCTAGGTGGCTCCAACTTTGGCTCCCTG
GCGGATGAGTTCCGCAACGGTGGTGGTGGAGGAATCCCTCCAGCAGTTCG
CAGTGGACAACAGCGCTCATTTCTGTCCCTCAAATGCGGCTACTTGATGG
ACGAGGACTCCAGTCCGGATTCGGAAAGGATGCAGAGTCTGGGCGACGTG
GACAGTGGTCACAGCACGGCGCATTCGCCCAACGACTTTAAGAGCATGTC
GCCGCAGATCACGTCTCCCGTTTCGCAGTCCCCCTTTCCGCCTNCCTTTG
GGGGCGTGCCCTTTGGCCAGCTGGAGATGCTGGAGGCCACTCACCGTGGT
CTGCACAAGTTTGTGCCGCGGCACCACGACGAGATCGAGCTGGAGATCGG
CGACGCCATCTACGTGCAAAAGGAGGC
BS07363.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1200-PB | 1473 | Aplip1-RB | 1..911 | 17..927 | 4536 | 99.8 | Plus |
CG1200-PA | 1452 | Aplip1-RA | 1..490 | 17..506 | 2450 | 100 | Plus |
CG1200-PA | 1452 | Aplip1-RA | 491..890 | 528..927 | 1981 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:13:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aplip1-RB | 2411 | CG1200-RB | 223..1137 | 13..927 | 4564 | 99.9 | Plus |
Aplip1-RA | 2390 | CG1200-RA | 223..1116 | 13..927 | 4239 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:13:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1197509..1197929 | 507..927 | 2094 | 99.8 | Plus |
3L | 28110227 | 3L | 1196937..1197313 | 130..506 | 1885 | 100 | Plus |
3L | 28110227 | 3L | 1196539..1196655 | 13..129 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:13:31 has no hits.
BS07363.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:10:42 Download gff for
BS07363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1200-PB | 1..911 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:00:06 Download gff for
BS07363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1200-PB | 1..911 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:56:58 Download gff for
BS07363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aplip1-RB | 219..1137 | 9..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:16:21 Download gff for
BS07363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aplip1-RB | 219..1137 | 9..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:16:21 Download gff for
BS07363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1196535..1196655 | 9..129 | 98 | -> | Plus |
3L | 1196937..1197313 | 130..506 | 100 | -> | Plus |
3L | 1197509..1197929 | 507..927 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:56:58 Download gff for
BS07363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1196535..1196655 | 9..129 | 98 | -> | Plus |
arm_3L | 1196937..1197313 | 130..506 | 100 | -> | Plus |
arm_3L | 1197509..1197929 | 507..927 | 99 | | Plus |
BS07363.complete Sequence
1505 bp (1505 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635831
> BS07363.complete
GAAGTTATCAGTCGACATGGCCGACAGCGAATTCGAGGAGTTCCACAGGC
CCATATTTGAGCCACATACGATTGCTGGATTCGGATCAGGAGCAGGCAGC
AAGAAGAATAATCCACATGCATTTTACTCCTTAATTCCCAACGATGACCT
GGAGGACTCGCACTCCTCGAAGAGCGATGGCGACGGTTCGGATCAGGAGG
ATGGCATTGGTCTTGTGGATCACGAGCCCAAGATGCGTCAAGTGGAGGAC
GATGAGCTGGGCGACGGGCTGAAAGTCACTCTGTCCTCGGACGGCTCGCT
GGACACCAACGACTCGTTTAATTCGCACCGACATCATCCGTTGAACCACC
AGGATGCGATTGGTGGCTTCCTGGGCATGGACACCAGTGGATTGGGTGGC
AATAGTGCACCTGTGACCATTGGAGCCAGCACAGATCTGCTGGCACCCAA
TACAGCTGCCACGCGACGTCGTCGCAAGTTGCCGGAAATACCGAAAAACA
AGAAATCTTCCATTCTGCATCTTCTAGGTGGCTCCAACTTTGGCTCCCTG
GCGGATGAGTTCCGCAACGGTGGTGGTGGAGGAATCCCTCCAGCAGTTCG
CAGTGGACAACAGCGCTCATTTCTGTCCCTCAAATGCGGCTACTTGATGG
ACGAGGACTCCAGTCCGGATTCGGAAAGGATGCAGAGTCTGGGCGACGTG
GACAGTGGTCACAGCACGGCGCATTCGCCCAACGACTTTAAGAGCATGTC
GCCGCAGATCACGTCTCCCGTTTCGCAGTCCCCCTTTCCGCCTCCCTTTG
GGGGCGTGCCCTTTGGCCAGCTGGAGATGCTGGAGGCCACTCACCGTGGT
CTGCACAAGTTTGTGCCGCGGCACCACGACGAGATCGAGCTGGAGATCGG
CGACGCCATCTACGTGCAAAAGGAGGCCGAGGACCTGTGGTGCGAGGGTG
TGAATCTCCGCACCGGAAGGCAGGGCATCTTCCCCTCGGCCTACGCCGTG
GACCTGGACTACAACGAGTTCGATCCCACAGTGCAGCTGGTGAAGAAGGA
GCGCTATCTGCTGGGCTACCTCGGATCCGTGGAGACGCTGGCGCACAAGG
GCACCGGAGTCGTTTGCCAGGCGGTGCGCAAGATTGTCGGGGAGTACGGC
AACTCACCGACCGGACAGACGTGCATCCTGGAGGTTTCCGACCAGGGACT
TCGCATGGTGGATCGATCGGGCCCGAATCAAAACAAAAAGGACAAGAAAC
CTTGCATCGACTACTTCTACTCCCTGAAGAACGTCTCCTTCTGCGCATTT
CACCCTCGCGATCACCGCTTCATTGGCTTCATCACCAAACATCCCACGGT
TCAGCGGTTCGCCTGCCACGTCTTCAAGGGCTCGGAGTCGACCAGACCGG
TGGCCGAGGCAGTGGGCCGTGCTTTCCAGCGATTCTATCAGAAATTCATT
GAAACCGCTTATCCCATCGAGGACATCTACATTGAGTAGAAGCTTTCTAG
ACCAT
BS07363.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:15:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aplip1-RB | 1473 | CG1200-PB | 1..1473 | 17..1489 | 7365 | 100 | Plus |
Aplip1-RA | 1452 | CG1200-PA | 1..1452 | 17..1489 | 7015 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aplip1-RB | 2411 | CG1200-RB | 223..1699 | 13..1489 | 7385 | 100 | Plus |
Aplip1-RA | 2390 | CG1200-RA | 223..1678 | 13..1489 | 7035 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1197509..1198230 | 507..1228 | 3610 | 100 | Plus |
3L | 28110227 | 3L | 1196937..1197313 | 130..506 | 1885 | 100 | Plus |
3L | 28110227 | 3L | 1198299..1198486 | 1229..1416 | 940 | 100 | Plus |
3L | 28110227 | 3L | 1196539..1196655 | 13..129 | 585 | 100 | Plus |
3L | 28110227 | 3L | 1198554..1198627 | 1416..1489 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:15:49 has no hits.
BS07363.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:26 Download gff for
BS07363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aplip1-RB | 1..1473 | 17..1489 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:40 Download gff for
BS07363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aplip1-RB | 215..1704 | 9..1500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:22 Download gff for
BS07363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aplip1-RB | 227..1699 | 17..1489 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:26 Download gff for
BS07363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aplip1-RB | 215..1704 | 9..1500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:37 Download gff for
BS07363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aplip1-RB | 227..1699 | 17..1489 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:37 Download gff for
BS07363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1196543..1196655 | 17..129 | 100 | -> | Plus |
3L | 1196937..1197313 | 130..506 | 100 | -> | Plus |
3L | 1197509..1198230 | 507..1228 | 100 | -> | Plus |
3L | 1198299..1198486 | 1229..1416 | 100 | -> | Plus |
3L | 1198555..1198627 | 1417..1489 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:22 Download gff for
BS07363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1196543..1196655 | 17..129 | 100 | -> | Plus |
arm_3L | 1196937..1197313 | 130..506 | 100 | -> | Plus |
arm_3L | 1197509..1198230 | 507..1228 | 100 | -> | Plus |
arm_3L | 1198299..1198486 | 1229..1416 | 100 | -> | Plus |
arm_3L | 1198555..1198627 | 1417..1489 | 100 | | Plus |
BS07363.pep Sequence
Translation from 16 to 1488
> BS07363.pep
MADSEFEEFHRPIFEPHTIAGFGSGAGSKKNNPHAFYSLIPNDDLEDSHS
SKSDGDGSDQEDGIGLVDHEPKMRQVEDDELGDGLKVTLSSDGSLDTNDS
FNSHRHHPLNHQDAIGGFLGMDTSGLGGNSAPVTIGASTDLLAPNTAATR
RRRKLPEIPKNKKSSILHLLGGSNFGSLADEFRNGGGGGIPPAVRSGQQR
SFLSLKCGYLMDEDSSPDSERMQSLGDVDSGHSTAHSPNDFKSMSPQITS
PVSQSPFPPPFGGVPFGQLEMLEATHRGLHKFVPRHHDEIELEIGDAIYV
QKEAEDLWCEGVNLRTGRQGIFPSAYAVDLDYNEFDPTVQLVKKERYLLG
YLGSVETLAHKGTGVVCQAVRKIVGEYGNSPTGQTCILEVSDQGLRMVDR
SGPNQNKKDKKPCIDYFYSLKNVSFCAFHPRDHRFIGFITKHPTVQRFAC
HVFKGSESTRPVAEAVGRAFQRFYQKFIETAYPIEDIYIE*
BS07363.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aplip1-PB | 490 | CG1200-PB | 1..490 | 1..490 | 2611 | 100 | Plus |
Aplip1-PA | 483 | CG1200-PA | 1..483 | 1..490 | 2554 | 98.4 | Plus |