Clone BS07363 Report

Search the DGRC for BS07363

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:73
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptAplip1-RB
Protein status:BS07363.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07363.3prime Sequence

920 bp (878 high quality bases) assembled on 2006-01-06

> BS07363.3prime
ATGGTCTAGAAAGCTTCTACTCAATGTAGATGTCCTCGATGGGATAAGCG
GTTTCAATGAATTTCTGATAGAATCGCTGGAAAGCACGGCCCACTGCCTC
GGCCACCGGTCTGGTCGACTCCGAGCCCTTGAAGACGTGGCAGGCGAACC
GCTGAACCGTGGGATGTTTGGTGATGAAGCCAATGAAGCGGTGATCGCGA
GGGTGAAATGCGCAGAAGGAGACGTTCTTCAGGGAGTAGAAGTAGTCGAT
GCAAGGTTTCTTGTCCTTTTTGTTTTGATTCGGGCCCGATCGATCCACCA
TGCGAAGTCCCTGGTCGGAAACCTCCAGGATGCACGTCTGTCCGGTCGGT
GAGTTGCCGTACTCCCCGACAATCTTGCGCACCGCCTGGCAAACGACTCC
GGTGCCCTTGTGCGCCAGCGTCTCCACGGATCCGAGGTAGCCCAGCAGAT
AGCGCTCCTTCTTCACCAGCTGCACTGTGGGATCGAACTCGTTGTAGTCC
AGGTCCACGGCGTAGGCCGAGGGGAAGATGCCCTGCCTTCCGGTGCGGAG
ATTCACACCCTCGCACCACAGGTCCTCGGCCTCCTTTTGCACGTAGATGG
CGTCGCCGATCTCCAGCTCGATCTCGTCGTGGTGCCGCGGCACAAACTTG
TGCAGACCACGGTGAGTGGCCTCCAGCATCTCCAGCTGGCCAAAGGGCAC
GCCCCCAAAGGGAGGCGGAAAGGGGGACTGCGAAACGGGAGACGTGATCT
GCGGCGACATGCTCTTAAAGTCGTTGGGCGAATGCGCCGTGCTGTGACCA
CTGTCCACGTCGCCCAGACTCTGCATCCTTTCCGAATCCGGACTGGAGTC
CTCGTCCCATCAGTAGCCGCATTTGAGGGACAGAAATGAGCGCTGTTGTC
CACTGCGAACTGCTGGAGGG

BS07363.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG1200-PA 1452 Aplip1-RA 612..1452 857..17 4205 100 Minus
CG1200-PB 1473 Aplip1-RB 633..1473 857..17 4205 100 Minus
CG1200-PA 1452 Aplip1-RA 549..607 920..862 295 100 Minus
CG1200-PB 1473 Aplip1-RB 570..628 920..862 295 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
Aplip1-RB 2411 CG1200-RB 796..1699 920..17 4475 99.8 Minus
Aplip1-RA 2390 CG1200-RA 775..1678 920..17 4475 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1197588..1198230 920..278 3155 99.4 Minus
3L 28110227 3L 1198299..1198486 277..90 940 100 Minus
3L 28110227 3L 1198554..1198627 90..17 370 100 Minus
Blast to na_te.dros performed on 2015-01-31 16:13:53 has no hits.

BS07363.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:10:41 Download gff for BS07363.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1200-PA 549..1452 17..920 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:00:05 Download gff for BS07363.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1200-PB 570..1473 17..920 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:21:54 Download gff for BS07363.3prime
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RA 775..1687 6..920 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:40:50 Download gff for BS07363.3prime
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RA 775..1687 6..920 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:40:50 Download gff for BS07363.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1197588..1198230 278..920 99 -> Minus
3L 1198299..1198486 90..277 100 -> Minus
3L 1198555..1198636 6..89 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:21:54 Download gff for BS07363.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1197588..1198230 278..920 99 -> Minus
arm_3L 1198299..1198486 90..277 100 -> Minus
arm_3L 1198555..1198636 6..89 95   Minus

BS07363.5prime Sequence

927 bp (777 high quality bases) assembled on 2006-01-06

> BS07363.5prime
GAAGTTATCAGTCGACATGGCCGACAGCGAATTCGAGGAGTTCCACAGGC
CCATATTTGAGCCACATACGATTGCTGGATTCGGATCAGGAGCAGGCAGC
AAGAAGAATAATCCACATGCATTTTACTCCTTAATTCCCAACGATGACCT
GGAGGACTCGCACTCCTCGAAGAGCGATGGCGACGGTTCGGATCAGGAGG
ATGGCATTGGTCTTGTGGATCACGAGCCCAAGATGCGTCAAGTGGAGGAC
GATGAGCTGGGCGACGGGCTGAAAGTCACTCTGTCCTCGGACGGCTCGCT
GGACACCAACGACTCGTTTAATTCGCACCGACATCATCCGTTGAACCACC
AGGATGCGATTGGTGGCTTCCTGGGCATGGACACCAGTGGATTGGGTGGC
AATAGTGCACCTGTGACCATTGGAGCCAGCACAGATCTGCTGGCACCCAA
TACAGCTGCCACGCGACGTCGTCGCAAGTTGCCGGAAATACCGAAAAACA
AGAAATCTTCCATTCTGCATCTTCTAGGTGGCTCCAACTTTGGCTCCCTG
GCGGATGAGTTCCGCAACGGTGGTGGTGGAGGAATCCCTCCAGCAGTTCG
CAGTGGACAACAGCGCTCATTTCTGTCCCTCAAATGCGGCTACTTGATGG
ACGAGGACTCCAGTCCGGATTCGGAAAGGATGCAGAGTCTGGGCGACGTG
GACAGTGGTCACAGCACGGCGCATTCGCCCAACGACTTTAAGAGCATGTC
GCCGCAGATCACGTCTCCCGTTTCGCAGTCCCCCTTTCCGCCTNCCTTTG
GGGGCGTGCCCTTTGGCCAGCTGGAGATGCTGGAGGCCACTCACCGTGGT
CTGCACAAGTTTGTGCCGCGGCACCACGACGAGATCGAGCTGGAGATCGG
CGACGCCATCTACGTGCAAAAGGAGGC

BS07363.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG1200-PB 1473 Aplip1-RB 1..911 17..927 4536 99.8 Plus
CG1200-PA 1452 Aplip1-RA 1..490 17..506 2450 100 Plus
CG1200-PA 1452 Aplip1-RA 491..890 528..927 1981 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:13:34
Subject Length Description Subject Range Query Range Score Percent Strand
Aplip1-RB 2411 CG1200-RB 223..1137 13..927 4564 99.9 Plus
Aplip1-RA 2390 CG1200-RA 223..1116 13..927 4239 97.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1197509..1197929 507..927 2094 99.8 Plus
3L 28110227 3L 1196937..1197313 130..506 1885 100 Plus
3L 28110227 3L 1196539..1196655 13..129 585 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:13:31 has no hits.

BS07363.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:10:42 Download gff for BS07363.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1200-PB 1..911 17..927 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:00:06 Download gff for BS07363.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1200-PB 1..911 17..927 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:56:58 Download gff for BS07363.5prime
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RB 219..1137 9..927 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:16:21 Download gff for BS07363.5prime
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RB 219..1137 9..927 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:16:21 Download gff for BS07363.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1196535..1196655 9..129 98 -> Plus
3L 1196937..1197313 130..506 100 -> Plus
3L 1197509..1197929 507..927 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:56:58 Download gff for BS07363.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1196535..1196655 9..129 98 -> Plus
arm_3L 1196937..1197313 130..506 100 -> Plus
arm_3L 1197509..1197929 507..927 99   Plus

BS07363.complete Sequence

1505 bp (1505 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635831

> BS07363.complete
GAAGTTATCAGTCGACATGGCCGACAGCGAATTCGAGGAGTTCCACAGGC
CCATATTTGAGCCACATACGATTGCTGGATTCGGATCAGGAGCAGGCAGC
AAGAAGAATAATCCACATGCATTTTACTCCTTAATTCCCAACGATGACCT
GGAGGACTCGCACTCCTCGAAGAGCGATGGCGACGGTTCGGATCAGGAGG
ATGGCATTGGTCTTGTGGATCACGAGCCCAAGATGCGTCAAGTGGAGGAC
GATGAGCTGGGCGACGGGCTGAAAGTCACTCTGTCCTCGGACGGCTCGCT
GGACACCAACGACTCGTTTAATTCGCACCGACATCATCCGTTGAACCACC
AGGATGCGATTGGTGGCTTCCTGGGCATGGACACCAGTGGATTGGGTGGC
AATAGTGCACCTGTGACCATTGGAGCCAGCACAGATCTGCTGGCACCCAA
TACAGCTGCCACGCGACGTCGTCGCAAGTTGCCGGAAATACCGAAAAACA
AGAAATCTTCCATTCTGCATCTTCTAGGTGGCTCCAACTTTGGCTCCCTG
GCGGATGAGTTCCGCAACGGTGGTGGTGGAGGAATCCCTCCAGCAGTTCG
CAGTGGACAACAGCGCTCATTTCTGTCCCTCAAATGCGGCTACTTGATGG
ACGAGGACTCCAGTCCGGATTCGGAAAGGATGCAGAGTCTGGGCGACGTG
GACAGTGGTCACAGCACGGCGCATTCGCCCAACGACTTTAAGAGCATGTC
GCCGCAGATCACGTCTCCCGTTTCGCAGTCCCCCTTTCCGCCTCCCTTTG
GGGGCGTGCCCTTTGGCCAGCTGGAGATGCTGGAGGCCACTCACCGTGGT
CTGCACAAGTTTGTGCCGCGGCACCACGACGAGATCGAGCTGGAGATCGG
CGACGCCATCTACGTGCAAAAGGAGGCCGAGGACCTGTGGTGCGAGGGTG
TGAATCTCCGCACCGGAAGGCAGGGCATCTTCCCCTCGGCCTACGCCGTG
GACCTGGACTACAACGAGTTCGATCCCACAGTGCAGCTGGTGAAGAAGGA
GCGCTATCTGCTGGGCTACCTCGGATCCGTGGAGACGCTGGCGCACAAGG
GCACCGGAGTCGTTTGCCAGGCGGTGCGCAAGATTGTCGGGGAGTACGGC
AACTCACCGACCGGACAGACGTGCATCCTGGAGGTTTCCGACCAGGGACT
TCGCATGGTGGATCGATCGGGCCCGAATCAAAACAAAAAGGACAAGAAAC
CTTGCATCGACTACTTCTACTCCCTGAAGAACGTCTCCTTCTGCGCATTT
CACCCTCGCGATCACCGCTTCATTGGCTTCATCACCAAACATCCCACGGT
TCAGCGGTTCGCCTGCCACGTCTTCAAGGGCTCGGAGTCGACCAGACCGG
TGGCCGAGGCAGTGGGCCGTGCTTTCCAGCGATTCTATCAGAAATTCATT
GAAACCGCTTATCCCATCGAGGACATCTACATTGAGTAGAAGCTTTCTAG
ACCAT

BS07363.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
Aplip1-RB 1473 CG1200-PB 1..1473 17..1489 7365 100 Plus
Aplip1-RA 1452 CG1200-PA 1..1452 17..1489 7015 98.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:52
Subject Length Description Subject Range Query Range Score Percent Strand
Aplip1-RB 2411 CG1200-RB 223..1699 13..1489 7385 100 Plus
Aplip1-RA 2390 CG1200-RA 223..1678 13..1489 7035 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1197509..1198230 507..1228 3610 100 Plus
3L 28110227 3L 1196937..1197313 130..506 1885 100 Plus
3L 28110227 3L 1198299..1198486 1229..1416 940 100 Plus
3L 28110227 3L 1196539..1196655 13..129 585 100 Plus
3L 28110227 3L 1198554..1198627 1416..1489 370 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:15:49 has no hits.

BS07363.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:26 Download gff for BS07363.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RB 1..1473 17..1489 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:40 Download gff for BS07363.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RB 215..1704 9..1500 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:22 Download gff for BS07363.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RB 227..1699 17..1489 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:26 Download gff for BS07363.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RB 215..1704 9..1500 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:37 Download gff for BS07363.complete
Subject Subject Range Query Range Percent Splice Strand
Aplip1-RB 227..1699 17..1489 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:37 Download gff for BS07363.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1196543..1196655 17..129 100 -> Plus
3L 1196937..1197313 130..506 100 -> Plus
3L 1197509..1198230 507..1228 100 -> Plus
3L 1198299..1198486 1229..1416 100 -> Plus
3L 1198555..1198627 1417..1489 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:22 Download gff for BS07363.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1196543..1196655 17..129 100 -> Plus
arm_3L 1196937..1197313 130..506 100 -> Plus
arm_3L 1197509..1198230 507..1228 100 -> Plus
arm_3L 1198299..1198486 1229..1416 100 -> Plus
arm_3L 1198555..1198627 1417..1489 100   Plus

BS07363.pep Sequence

Translation from 16 to 1488

> BS07363.pep
MADSEFEEFHRPIFEPHTIAGFGSGAGSKKNNPHAFYSLIPNDDLEDSHS
SKSDGDGSDQEDGIGLVDHEPKMRQVEDDELGDGLKVTLSSDGSLDTNDS
FNSHRHHPLNHQDAIGGFLGMDTSGLGGNSAPVTIGASTDLLAPNTAATR
RRRKLPEIPKNKKSSILHLLGGSNFGSLADEFRNGGGGGIPPAVRSGQQR
SFLSLKCGYLMDEDSSPDSERMQSLGDVDSGHSTAHSPNDFKSMSPQITS
PVSQSPFPPPFGGVPFGQLEMLEATHRGLHKFVPRHHDEIELEIGDAIYV
QKEAEDLWCEGVNLRTGRQGIFPSAYAVDLDYNEFDPTVQLVKKERYLLG
YLGSVETLAHKGTGVVCQAVRKIVGEYGNSPTGQTCILEVSDQGLRMVDR
SGPNQNKKDKKPCIDYFYSLKNVSFCAFHPRDHRFIGFITKHPTVQRFAC
HVFKGSESTRPVAEAVGRAFQRFYQKFIETAYPIEDIYIE*

BS07363.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
Aplip1-PB 490 CG1200-PB 1..490 1..490 2611 100 Plus
Aplip1-PA 483 CG1200-PA 1..483 1..490 2554 98.4 Plus