Clone Sequence Records
BS07364.3prime Sequence
924 bp (862 high quality bases) assembled on 2006-01-06
> BS07364.3prime
ATGGTCTAGAAAGCTTCTAGCGATTCCGCTTGGTCTTGCGACTCACATTG
CCCTCGATGATAATCTGAAGGATCTGGCTGGCCTCGAAAGCGGTGCCCGG
CAGCAGGATCACCGGCGATGTCACATTGCCCGCCTCCACGCACAACATGT
TGGGGAACTCGTCGTCCCCGAAGTCACTCATCTCACGCGATCGATCGATC
CAAGGATTCCAGATGACCGTATCGGGAAAATTGTACTTGTGCAGTCTCAT
CTTCCTGCCGGACACCACGTTTGTGATGACGTGCTCCTGCGGCGTGTGCT
GGTAGATCCTGTCGGTCCACTCATTGACGGTGACCACCTCGCGTCCCTCC
TGATAGAGCGCATTCTCCCGCGTCTTGTCGATGAAGTGACAGCCCTGGAG
GCCGGTGATCTGACATCGGCGCACATCGGGCACCTTTAGGTAGGTGTGCA
GCAGCATGTTGAAGGTGAAGCTCAGCTCCTTGCTGGGATTGTAGACGCCG
ATGTGGAAGTGCAGCTCCTTTTCGCGCAGGATCAGCCTATAAGTGATGCG
AAACTGATAATTCCATATGGATCGCGTAAAATCGTTGTCCATCAGCGAAA
ATATGGCCTCCACATCGCCATTGTGAAGCCTGTCTGGCGGTCTCTCCAGG
TGCCACCTGGTAATCCTCGCAAATCCATGCTGCGGCCCAAAGGACCACGC
ACCGAACTGAGGGAAGACAAAGGGAATCCCACCGCGTATCGCCTTCTTGC
CATCGAATGAGGCTAGTTTGCTGACAAACAACTGCTCCTGATTGTTTACC
CGCCAGGACACGACCGTCGCACCGTGCAAGTTGATGGTGCAGGTTGTATT
GTTTCCGCGATCCAGAAACACTACACTCGTTGCGGCCATTGCGGCCGCTG
TCGTGGCCATGTCGACTGATAACT
BS07364.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9008-PA | 894 | CG9008-RA | 1..894 | 910..17 | 4420 | 99.7 | Minus |
CG9008-PB | 576 | CG9008-RB | 1..576 | 592..17 | 2880 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:55:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9008-RA | 1987 | CG9008-RA | 434..1327 | 910..17 | 4440 | 99.8 | Minus |
CG9008-RE | 2194 | CG9008-RE | 434..1279 | 910..65 | 4200 | 99.8 | Minus |
CG9008-RD | 2125 | CG9008-RD | 434..1279 | 910..65 | 4200 | 99.8 | Minus |
CG9008-RE | 2194 | CG9008-RE | 1483..1534 | 68..17 | 260 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:55:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13775471..13775808 | 217..554 | 1690 | 100 | Plus |
2L | 23513712 | 2L | 13775876..13776034 | 553..711 | 795 | 100 | Plus |
2L | 23513712 | 2L | 13775255..13775407 | 65..217 | 765 | 100 | Plus |
2L | 23513712 | 2L | 13779642..13779732 | 820..910 | 425 | 97.8 | Plus |
2L | 23513712 | 2L | 13776098..13776159 | 712..773 | 310 | 100 | Plus |
2L | 23513712 | 2L | 13777771..13777823 | 771..823 | 265 | 100 | Plus |
2L | 23513712 | 2L | 13775000..13775051 | 17..68 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:55:03 has no hits.
BS07364.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:10:43 Download gff for
BS07364.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9008-PA | 1..894 | 17..910 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:00:08 Download gff for
BS07364.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9008-PA | 1..894 | 17..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:56:27 Download gff for
BS07364.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9008-RA | 429..1337 | 5..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:19 Download gff for
BS07364.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9008-RA | 429..1337 | 5..915 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:19 Download gff for
BS07364.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13775471..13775808 | 217..554 | 100 | <- | Plus |
2L | 13775878..13776034 | 555..711 | 100 | <- | Plus |
2L | 13776098..13776156 | 712..770 | 100 | <- | Plus |
2L | 13777771..13777822 | 771..822 | 100 | <- | Plus |
2L | 13779645..13779737 | 823..915 | 95 | | Plus |
2L | 13774990..13775047 | 5..64 | 91 | <- | Plus |
2L | 13775255..13775406 | 65..216 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:56:27 Download gff for
BS07364.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13774990..13775047 | 5..64 | 91 | <- | Plus |
arm_2L | 13775255..13775406 | 65..216 | 100 | <- | Plus |
arm_2L | 13775471..13775808 | 217..554 | 100 | <- | Plus |
arm_2L | 13775878..13776034 | 555..711 | 100 | <- | Plus |
arm_2L | 13776098..13776156 | 712..770 | 100 | <- | Plus |
arm_2L | 13777771..13777822 | 771..822 | 100 | <- | Plus |
arm_2L | 13779645..13779737 | 823..915 | 95 | | Plus |
BS07364.5prime Sequence
908 bp (761 high quality bases) assembled on 2006-01-06
> BS07364.5prime
GAAGTTATCAGTCGACATGGCCACGACAGCGGCCGCAATGGCCGCAACGA
GTGTAGTTGTTCTGGATCGCGGAAACAATACAACCTGCACCATCAACTTG
CACGGTGCGACGGTCGTGTCCTGGCGGGTAAACAATCAGGAGCAGTTGTT
TGTCAGCAAACTAGCCTCATTCGATGGCAAGAAGGCGATACGCGGTGGGA
TTCCCTTTGTCTTCCCTCAGTTCGGTGCGTGGTCCTTTGGGCCGCAGCAT
GGATTTGCGAGGATTACCAGGTGGCACCTGGAGAGACCGCCAGACAGGCT
TCACAATGGCGATGTGGAGGCCATATTTTCGCTGATGGACAACGATTTTA
CGCGATCCATATGGAATTATCAGTTTCGCATCACTTATAGGCTGATCCTG
CGCGAAAAGGAGCTGCACTTCCACATCGGCGTCTACAATCCCAGCAAGGA
GCTGAGCTTCACCTTCAACATGCTGCTGCACACCTACCTAAAGGTGCCCG
ATGTGCGCCGATGTCAGATCACCGGCCTCCAGGGCTGTCACTTCATCGAC
AAGACGCGGGAGAATGCGCTCTATCAGGAGGGACGCGAGGTGGTCACCGT
CAATGAGTGGACCGACAGGATCTACCAGCACACGCCGCAGGAGCACGTCA
TCACAAACGTGGTGTCCGGCAGGAAGATGAGACTGCACAAGTACAATTTT
CCCGATACGGTCATCTGGAATCCTTGGATCGATCGATCGCGTGAGATGAG
TGACTTCGGGGACGACGAGTTCCCCAACATGTTGTGCGTGGAGGCGGGCA
ATGTGACATCGCCGGTGATCCTGCTGCCGGGCACCGCTTTCGAGGCCAGC
CAGATCCTTCAGATTATCATCGAGGGCAATGTGAGTCGCAAGACCAAGCG
GGATCGCT
BS07364.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9008-PA | 894 | CG9008-RA | 1..892 | 17..908 | 4435 | 99.8 | Plus |
CG9008-PB | 576 | CG9008-RB | 1..574 | 335..908 | 2845 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:17:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9008-RA | 1987 | CG9008-RA | 434..1325 | 17..908 | 4445 | 99.9 | Plus |
CG9008-RE | 2194 | CG9008-RE | 434..1279 | 17..862 | 4230 | 100 | Plus |
CG9008-RD | 2125 | CG9008-RD | 434..1279 | 17..862 | 4230 | 100 | Plus |
CG9008-RE | 2194 | CG9008-RE | 1483..1532 | 859..908 | 235 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:17:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13775471..13775808 | 710..373 | 1690 | 100 | Minus |
2L | 23513712 | 2L | 13775876..13776034 | 374..216 | 795 | 100 | Minus |
2L | 23513712 | 2L | 13775255..13775407 | 862..710 | 765 | 100 | Minus |
2L | 23513712 | 2L | 13779642..13779732 | 107..17 | 455 | 100 | Minus |
2L | 23513712 | 2L | 13776098..13776159 | 215..154 | 310 | 100 | Minus |
2L | 23513712 | 2L | 13777771..13777823 | 156..104 | 265 | 100 | Minus |
2L | 23513712 | 2L | 13775002..13775051 | 908..859 | 235 | 98 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:17:39 has no hits.
BS07364.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:10:44 Download gff for
BS07364.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9008-PA | 1..892 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:00:09 Download gff for
BS07364.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9008-PA | 1..892 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:05:47 Download gff for
BS07364.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9008-RA | 429..1325 | 12..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:41:49 Download gff for
BS07364.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9008-RA | 429..1325 | 12..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:41:49 Download gff for
BS07364.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13775878..13776034 | 216..372 | 100 | <- | Minus |
2L | 13776098..13776156 | 157..215 | 100 | <- | Minus |
2L | 13777771..13777822 | 105..156 | 100 | <- | Minus |
2L | 13779645..13779737 | 12..104 | 97 | | Minus |
2L | 13775002..13775047 | 863..908 | 97 | <- | Minus |
2L | 13775255..13775406 | 711..862 | 100 | <- | Minus |
2L | 13775471..13775808 | 373..710 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:05:47 Download gff for
BS07364.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13775002..13775047 | 863..908 | 97 | <- | Minus |
arm_2L | 13775255..13775406 | 711..862 | 100 | <- | Minus |
arm_2L | 13775471..13775808 | 373..710 | 100 | <- | Minus |
arm_2L | 13775878..13776034 | 216..372 | 100 | <- | Minus |
arm_2L | 13776098..13776156 | 157..215 | 100 | <- | Minus |
arm_2L | 13777771..13777822 | 105..156 | 100 | <- | Minus |
arm_2L | 13779645..13779737 | 12..104 | 97 | | Minus |
BS07364.complete Sequence
926 bp (926 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635832
> BS07364.complete
GAAGTTATCAGTCGACATGGCCACGACAGCGGCCGCAATGGCCGCAACGA
GTGTAGTTGTTCTGGATCGCGGAAACAATACAACCTGCACCATCAACTTG
CACGGTGCGACGGTCGTGTCCTGGCGGGTAAACAATCAGGAGCAGTTGTT
TGTCAGCAAACTAGCCTCATTCGATGGCAAGAAGGCGATACGCGGTGGGA
TTCCCTTTGTCTTCCCTCAGTTCGGTGCGTGGTCCTTTGGGCCGCAGCAT
GGATTTGCGAGGATTACCAGGTGGCACCTGGAGAGACCGCCAGACAGGCT
TCACAATGGCGATGTGGAGGCCATATTTTCGCTGATGGACAACGATTTTA
CGCGATCCATATGGAATTATCAGTTTCGCATCACTTATAGGCTGATCCTG
CGCGAAAAGGAGCTGCACTTCCACATCGGCGTCTACAATCCCAGCAAGGA
GCTGAGCTTCACCTTCAACATGCTGCTGCACACCTACCTAAAGGTGCCCG
ATGTGCGCCGATGTCAGATCACCGGCCTCCAGGGCTGTCACTTCATCGAC
AAGACGCGGGAGAATGCGCTCTATCAGGAGGGACGCGAGGTGGTCACCGT
CAATGAGTGGACCGACAGGATCTACCAGCACACGCCGCAGGAGCACGTCA
TCACAAACGTGGTGTCCGGCAGGAAGATGAGACTGCACAAGTACAATTTT
CCCGATACGGTCATCTGGAATCCTTGGATCGATCGATCGCGTGAGATGAG
TGACTTCGGGGACGACGAGTTCCCCAACATGTTGTGCGTGGAGGCGGGCA
ATGTGACATCGCCGGTGATCCTGCTGCCGGGCACCGCTTTCGAGGCCAGC
CAGATCCTTCAGATTATCATCGAGGGCAATGTGAGTCGCAAGACCAAGCG
GAATCGCTAGAAGCTTTCTAGACCAT
BS07364.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:08:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9008-RA | 894 | CG9008-PA | 1..894 | 17..910 | 4470 | 100 | Plus |
CG9008-RE | 870 | CG9008-PE | 1..846 | 17..862 | 4230 | 100 | Plus |
CG9008-RD | 927 | CG9008-PD | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9008-RA | 1987 | CG9008-RA | 434..1327 | 17..910 | 4470 | 100 | Plus |
CG9008-RE | 2194 | CG9008-RE | 434..1279 | 17..862 | 4230 | 100 | Plus |
CG9008-RD | 2125 | CG9008-RD | 434..1279 | 17..862 | 4230 | 100 | Plus |
CG9008-RE | 2194 | CG9008-RE | 1483..1534 | 859..910 | 260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13775471..13775808 | 710..373 | 1690 | 100 | Minus |
2L | 23513712 | 2L | 13775876..13776034 | 374..216 | 795 | 100 | Minus |
2L | 23513712 | 2L | 13775255..13775407 | 862..710 | 765 | 100 | Minus |
2L | 23513712 | 2L | 13779642..13779732 | 107..17 | 455 | 100 | Minus |
2L | 23513712 | 2L | 13776098..13776159 | 215..154 | 310 | 100 | Minus |
2L | 23513712 | 2L | 13777771..13777823 | 156..104 | 265 | 100 | Minus |
2L | 23513712 | 2L | 13775000..13775051 | 910..859 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:08:43 has no hits.
BS07364.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:15 Download gff for
BS07364.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9008-RA | 1..894 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:26 Download gff for
BS07364.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9008-RA | 427..1335 | 12..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:26 Download gff for
BS07364.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9008-RA | 434..1327 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:15 Download gff for
BS07364.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9008-RA | 427..1335 | 12..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:50 Download gff for
BS07364.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9008-RA | 434..1327 | 17..910 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:50 Download gff for
BS07364.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13775000..13775047 | 863..910 | 100 | <- | Minus |
2L | 13775255..13775406 | 711..862 | 100 | <- | Minus |
2L | 13775471..13775808 | 373..710 | 100 | <- | Minus |
2L | 13775878..13776034 | 216..372 | 100 | <- | Minus |
2L | 13776098..13776156 | 157..215 | 100 | <- | Minus |
2L | 13777771..13777822 | 105..156 | 100 | <- | Minus |
2L | 13779645..13779732 | 17..104 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:26 Download gff for
BS07364.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13775000..13775047 | 863..910 | 100 | <- | Minus |
arm_2L | 13775255..13775406 | 711..862 | 100 | <- | Minus |
arm_2L | 13775471..13775808 | 373..710 | 100 | <- | Minus |
arm_2L | 13775878..13776034 | 216..372 | 100 | <- | Minus |
arm_2L | 13776098..13776156 | 157..215 | 100 | <- | Minus |
arm_2L | 13777771..13777822 | 105..156 | 100 | <- | Minus |
arm_2L | 13779645..13779732 | 17..104 | 100 | | Minus |
BS07364.pep Sequence
Translation from 16 to 909
> BS07364.pep
MATTAAAMAATSVVVLDRGNNTTCTINLHGATVVSWRVNNQEQLFVSKLA
SFDGKKAIRGGIPFVFPQFGAWSFGPQHGFARITRWHLERPPDRLHNGDV
EAIFSLMDNDFTRSIWNYQFRITYRLILREKELHFHIGVYNPSKELSFTF
NMLLHTYLKVPDVRRCQITGLQGCHFIDKTRENALYQEGREVVTVNEWTD
RIYQHTPQEHVITNVVSGRKMRLHKYNFPDTVIWNPWIDRSREMSDFGDD
EFPNMLCVEAGNVTSPVILLPGTAFEASQILQIIIEGNVSRKTKRNR*
BS07364.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9008-PA | 297 | CG9008-PA | 1..297 | 1..297 | 1590 | 100 | Plus |
CG9008-PE | 289 | CG9008-PE | 1..283 | 1..283 | 1520 | 99.6 | Plus |
CG9008-PD | 308 | CG9008-PD | 1..282 | 1..282 | 1517 | 100 | Plus |