Clone BS07364 Report

Search the DGRC for BS07364

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:73
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG9008-RA
Protein status:BS07364.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07364.3prime Sequence

924 bp (862 high quality bases) assembled on 2006-01-06

> BS07364.3prime
ATGGTCTAGAAAGCTTCTAGCGATTCCGCTTGGTCTTGCGACTCACATTG
CCCTCGATGATAATCTGAAGGATCTGGCTGGCCTCGAAAGCGGTGCCCGG
CAGCAGGATCACCGGCGATGTCACATTGCCCGCCTCCACGCACAACATGT
TGGGGAACTCGTCGTCCCCGAAGTCACTCATCTCACGCGATCGATCGATC
CAAGGATTCCAGATGACCGTATCGGGAAAATTGTACTTGTGCAGTCTCAT
CTTCCTGCCGGACACCACGTTTGTGATGACGTGCTCCTGCGGCGTGTGCT
GGTAGATCCTGTCGGTCCACTCATTGACGGTGACCACCTCGCGTCCCTCC
TGATAGAGCGCATTCTCCCGCGTCTTGTCGATGAAGTGACAGCCCTGGAG
GCCGGTGATCTGACATCGGCGCACATCGGGCACCTTTAGGTAGGTGTGCA
GCAGCATGTTGAAGGTGAAGCTCAGCTCCTTGCTGGGATTGTAGACGCCG
ATGTGGAAGTGCAGCTCCTTTTCGCGCAGGATCAGCCTATAAGTGATGCG
AAACTGATAATTCCATATGGATCGCGTAAAATCGTTGTCCATCAGCGAAA
ATATGGCCTCCACATCGCCATTGTGAAGCCTGTCTGGCGGTCTCTCCAGG
TGCCACCTGGTAATCCTCGCAAATCCATGCTGCGGCCCAAAGGACCACGC
ACCGAACTGAGGGAAGACAAAGGGAATCCCACCGCGTATCGCCTTCTTGC
CATCGAATGAGGCTAGTTTGCTGACAAACAACTGCTCCTGATTGTTTACC
CGCCAGGACACGACCGTCGCACCGTGCAAGTTGATGGTGCAGGTTGTATT
GTTTCCGCGATCCAGAAACACTACACTCGTTGCGGCCATTGCGGCCGCTG
TCGTGGCCATGTCGACTGATAACT

BS07364.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG9008-PA 894 CG9008-RA 1..894 910..17 4420 99.7 Minus
CG9008-PB 576 CG9008-RB 1..576 592..17 2880 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9008-RA 1987 CG9008-RA 434..1327 910..17 4440 99.8 Minus
CG9008-RE 2194 CG9008-RE 434..1279 910..65 4200 99.8 Minus
CG9008-RD 2125 CG9008-RD 434..1279 910..65 4200 99.8 Minus
CG9008-RE 2194 CG9008-RE 1483..1534 68..17 260 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:55:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13775471..13775808 217..554 1690 100 Plus
2L 23513712 2L 13775876..13776034 553..711 795 100 Plus
2L 23513712 2L 13775255..13775407 65..217 765 100 Plus
2L 23513712 2L 13779642..13779732 820..910 425 97.8 Plus
2L 23513712 2L 13776098..13776159 712..773 310 100 Plus
2L 23513712 2L 13777771..13777823 771..823 265 100 Plus
2L 23513712 2L 13775000..13775051 17..68 260 100 Plus
Blast to na_te.dros performed on 2015-02-12 03:55:03 has no hits.

BS07364.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:10:43 Download gff for BS07364.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9008-PA 1..894 17..910 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:00:08 Download gff for BS07364.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9008-PA 1..894 17..910 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:56:27 Download gff for BS07364.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9008-RA 429..1337 5..915 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:19 Download gff for BS07364.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9008-RA 429..1337 5..915 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:19 Download gff for BS07364.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13775471..13775808 217..554 100 <- Plus
2L 13775878..13776034 555..711 100 <- Plus
2L 13776098..13776156 712..770 100 <- Plus
2L 13777771..13777822 771..822 100 <- Plus
2L 13779645..13779737 823..915 95   Plus
2L 13774990..13775047 5..64 91 <- Plus
2L 13775255..13775406 65..216 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:56:27 Download gff for BS07364.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13774990..13775047 5..64 91 <- Plus
arm_2L 13775255..13775406 65..216 100 <- Plus
arm_2L 13775471..13775808 217..554 100 <- Plus
arm_2L 13775878..13776034 555..711 100 <- Plus
arm_2L 13776098..13776156 712..770 100 <- Plus
arm_2L 13777771..13777822 771..822 100 <- Plus
arm_2L 13779645..13779737 823..915 95   Plus

BS07364.5prime Sequence

908 bp (761 high quality bases) assembled on 2006-01-06

> BS07364.5prime
GAAGTTATCAGTCGACATGGCCACGACAGCGGCCGCAATGGCCGCAACGA
GTGTAGTTGTTCTGGATCGCGGAAACAATACAACCTGCACCATCAACTTG
CACGGTGCGACGGTCGTGTCCTGGCGGGTAAACAATCAGGAGCAGTTGTT
TGTCAGCAAACTAGCCTCATTCGATGGCAAGAAGGCGATACGCGGTGGGA
TTCCCTTTGTCTTCCCTCAGTTCGGTGCGTGGTCCTTTGGGCCGCAGCAT
GGATTTGCGAGGATTACCAGGTGGCACCTGGAGAGACCGCCAGACAGGCT
TCACAATGGCGATGTGGAGGCCATATTTTCGCTGATGGACAACGATTTTA
CGCGATCCATATGGAATTATCAGTTTCGCATCACTTATAGGCTGATCCTG
CGCGAAAAGGAGCTGCACTTCCACATCGGCGTCTACAATCCCAGCAAGGA
GCTGAGCTTCACCTTCAACATGCTGCTGCACACCTACCTAAAGGTGCCCG
ATGTGCGCCGATGTCAGATCACCGGCCTCCAGGGCTGTCACTTCATCGAC
AAGACGCGGGAGAATGCGCTCTATCAGGAGGGACGCGAGGTGGTCACCGT
CAATGAGTGGACCGACAGGATCTACCAGCACACGCCGCAGGAGCACGTCA
TCACAAACGTGGTGTCCGGCAGGAAGATGAGACTGCACAAGTACAATTTT
CCCGATACGGTCATCTGGAATCCTTGGATCGATCGATCGCGTGAGATGAG
TGACTTCGGGGACGACGAGTTCCCCAACATGTTGTGCGTGGAGGCGGGCA
ATGTGACATCGCCGGTGATCCTGCTGCCGGGCACCGCTTTCGAGGCCAGC
CAGATCCTTCAGATTATCATCGAGGGCAATGTGAGTCGCAAGACCAAGCG
GGATCGCT

BS07364.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG9008-PA 894 CG9008-RA 1..892 17..908 4435 99.8 Plus
CG9008-PB 576 CG9008-RB 1..574 335..908 2845 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG9008-RA 1987 CG9008-RA 434..1325 17..908 4445 99.9 Plus
CG9008-RE 2194 CG9008-RE 434..1279 17..862 4230 100 Plus
CG9008-RD 2125 CG9008-RD 434..1279 17..862 4230 100 Plus
CG9008-RE 2194 CG9008-RE 1483..1532 859..908 235 98 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:17:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13775471..13775808 710..373 1690 100 Minus
2L 23513712 2L 13775876..13776034 374..216 795 100 Minus
2L 23513712 2L 13775255..13775407 862..710 765 100 Minus
2L 23513712 2L 13779642..13779732 107..17 455 100 Minus
2L 23513712 2L 13776098..13776159 215..154 310 100 Minus
2L 23513712 2L 13777771..13777823 156..104 265 100 Minus
2L 23513712 2L 13775002..13775051 908..859 235 98 Minus
Blast to na_te.dros performed on 2015-02-11 09:17:39 has no hits.

BS07364.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:10:44 Download gff for BS07364.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9008-PA 1..892 17..908 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:00:09 Download gff for BS07364.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9008-PA 1..892 17..908 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:05:47 Download gff for BS07364.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9008-RA 429..1325 12..908 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:41:49 Download gff for BS07364.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9008-RA 429..1325 12..908 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:41:49 Download gff for BS07364.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13775878..13776034 216..372 100 <- Minus
2L 13776098..13776156 157..215 100 <- Minus
2L 13777771..13777822 105..156 100 <- Minus
2L 13779645..13779737 12..104 97   Minus
2L 13775002..13775047 863..908 97 <- Minus
2L 13775255..13775406 711..862 100 <- Minus
2L 13775471..13775808 373..710 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:05:47 Download gff for BS07364.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13775002..13775047 863..908 97 <- Minus
arm_2L 13775255..13775406 711..862 100 <- Minus
arm_2L 13775471..13775808 373..710 100 <- Minus
arm_2L 13775878..13776034 216..372 100 <- Minus
arm_2L 13776098..13776156 157..215 100 <- Minus
arm_2L 13777771..13777822 105..156 100 <- Minus
arm_2L 13779645..13779737 12..104 97   Minus

BS07364.complete Sequence

926 bp (926 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635832

> BS07364.complete
GAAGTTATCAGTCGACATGGCCACGACAGCGGCCGCAATGGCCGCAACGA
GTGTAGTTGTTCTGGATCGCGGAAACAATACAACCTGCACCATCAACTTG
CACGGTGCGACGGTCGTGTCCTGGCGGGTAAACAATCAGGAGCAGTTGTT
TGTCAGCAAACTAGCCTCATTCGATGGCAAGAAGGCGATACGCGGTGGGA
TTCCCTTTGTCTTCCCTCAGTTCGGTGCGTGGTCCTTTGGGCCGCAGCAT
GGATTTGCGAGGATTACCAGGTGGCACCTGGAGAGACCGCCAGACAGGCT
TCACAATGGCGATGTGGAGGCCATATTTTCGCTGATGGACAACGATTTTA
CGCGATCCATATGGAATTATCAGTTTCGCATCACTTATAGGCTGATCCTG
CGCGAAAAGGAGCTGCACTTCCACATCGGCGTCTACAATCCCAGCAAGGA
GCTGAGCTTCACCTTCAACATGCTGCTGCACACCTACCTAAAGGTGCCCG
ATGTGCGCCGATGTCAGATCACCGGCCTCCAGGGCTGTCACTTCATCGAC
AAGACGCGGGAGAATGCGCTCTATCAGGAGGGACGCGAGGTGGTCACCGT
CAATGAGTGGACCGACAGGATCTACCAGCACACGCCGCAGGAGCACGTCA
TCACAAACGTGGTGTCCGGCAGGAAGATGAGACTGCACAAGTACAATTTT
CCCGATACGGTCATCTGGAATCCTTGGATCGATCGATCGCGTGAGATGAG
TGACTTCGGGGACGACGAGTTCCCCAACATGTTGTGCGTGGAGGCGGGCA
ATGTGACATCGCCGGTGATCCTGCTGCCGGGCACCGCTTTCGAGGCCAGC
CAGATCCTTCAGATTATCATCGAGGGCAATGTGAGTCGCAAGACCAAGCG
GAATCGCTAGAAGCTTTCTAGACCAT

BS07364.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG9008-RA 894 CG9008-PA 1..894 17..910 4470 100 Plus
CG9008-RE 870 CG9008-PE 1..846 17..862 4230 100 Plus
CG9008-RD 927 CG9008-PD 1..846 17..862 4230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG9008-RA 1987 CG9008-RA 434..1327 17..910 4470 100 Plus
CG9008-RE 2194 CG9008-RE 434..1279 17..862 4230 100 Plus
CG9008-RD 2125 CG9008-RD 434..1279 17..862 4230 100 Plus
CG9008-RE 2194 CG9008-RE 1483..1534 859..910 260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13775471..13775808 710..373 1690 100 Minus
2L 23513712 2L 13775876..13776034 374..216 795 100 Minus
2L 23513712 2L 13775255..13775407 862..710 765 100 Minus
2L 23513712 2L 13779642..13779732 107..17 455 100 Minus
2L 23513712 2L 13776098..13776159 215..154 310 100 Minus
2L 23513712 2L 13777771..13777823 156..104 265 100 Minus
2L 23513712 2L 13775000..13775051 910..859 260 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:08:43 has no hits.

BS07364.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:15 Download gff for BS07364.complete
Subject Subject Range Query Range Percent Splice Strand
CG9008-RA 1..894 17..910 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:26 Download gff for BS07364.complete
Subject Subject Range Query Range Percent Splice Strand
CG9008-RA 427..1335 12..922 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:26 Download gff for BS07364.complete
Subject Subject Range Query Range Percent Splice Strand
CG9008-RA 434..1327 17..910 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:15 Download gff for BS07364.complete
Subject Subject Range Query Range Percent Splice Strand
CG9008-RA 427..1335 12..922 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:50 Download gff for BS07364.complete
Subject Subject Range Query Range Percent Splice Strand
CG9008-RA 434..1327 17..910 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:50 Download gff for BS07364.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13775000..13775047 863..910 100 <- Minus
2L 13775255..13775406 711..862 100 <- Minus
2L 13775471..13775808 373..710 100 <- Minus
2L 13775878..13776034 216..372 100 <- Minus
2L 13776098..13776156 157..215 100 <- Minus
2L 13777771..13777822 105..156 100 <- Minus
2L 13779645..13779732 17..104 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:26 Download gff for BS07364.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13775000..13775047 863..910 100 <- Minus
arm_2L 13775255..13775406 711..862 100 <- Minus
arm_2L 13775471..13775808 373..710 100 <- Minus
arm_2L 13775878..13776034 216..372 100 <- Minus
arm_2L 13776098..13776156 157..215 100 <- Minus
arm_2L 13777771..13777822 105..156 100 <- Minus
arm_2L 13779645..13779732 17..104 100   Minus

BS07364.pep Sequence

Translation from 16 to 909

> BS07364.pep
MATTAAAMAATSVVVLDRGNNTTCTINLHGATVVSWRVNNQEQLFVSKLA
SFDGKKAIRGGIPFVFPQFGAWSFGPQHGFARITRWHLERPPDRLHNGDV
EAIFSLMDNDFTRSIWNYQFRITYRLILREKELHFHIGVYNPSKELSFTF
NMLLHTYLKVPDVRRCQITGLQGCHFIDKTRENALYQEGREVVTVNEWTD
RIYQHTPQEHVITNVVSGRKMRLHKYNFPDTVIWNPWIDRSREMSDFGDD
EFPNMLCVEAGNVTSPVILLPGTAFEASQILQIIIEGNVSRKTKRNR*

BS07364.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG9008-PA 297 CG9008-PA 1..297 1..297 1590 100 Plus
CG9008-PE 289 CG9008-PE 1..283 1..283 1520 99.6 Plus
CG9008-PD 308 CG9008-PD 1..282 1..282 1517 100 Plus