Clone Sequence Records
BS07372.3prime Sequence
904 bp (822 high quality bases) assembled on 2006-01-09
> BS07372.3prime
ATGGTCTAGAAAGCTTTCATTTGGCAGCAACGGCATTCTTGGCCAGGGCA
CCCTCCAGGTTCTTGGCCAGCGTGTTAATGAACTCAAAAGTCTCCTGGTA
GTCCCTGCGAGTAACGGCGTTGATGTTGCCTTTAATGCAGATGGCCAGAT
CCTTGGTCATGGCGCCGCTCTCAATTGTGTCGATGCACACCTGCTCAAGG
GTGTCGGCGAACTGCTTCAGTGGCTCATTGTTGTCCAGCTTGGCACGATG
CAGCAGGCCACGGGTCCAGGCGAATATCGAGGCAATGGGGTTGGTGGAGG
TCTCCTTGCCCTGCTGGTAGAAGCGGAAGTGACGCGTCACCGTTCCGTGA
GCGGCTTCAGCCTCCACGGTCTTGCCATCGGGGCATAGCAGCACGGAGGT
CATCAGACCCAGAGATCCGTAGCCCTGGGCAACGGAGTCCGACTGCACAT
CACCGTCGTAGTTCTTGCAGGCCCACACGAAGCCACCCTCCGACTTCATG
GCATAAGCAACCATATCGTCGATGAGACGGTGTTCATACCAGATGCCCGC
CGCCTCGTACTCCTTCTTGTACTGCTTGTTGTACAGGTCCTCGAATATGT
CCTTGAAGCGTCCATCGTACTTCTTCAGAATGGTGTTCTTGGTGCTCATG
TACAGCGGCAGCTTGCGGTCCAGAGCATATTTGAAAGAGGCGTGGGCAAA
GTCCACAATGGAATCGTCCGTGTTGAACATTCCCAGGGCAATACCGGGGC
CCTTGAAGTCATTAATGACCTCATCGATCACCTGACCGTCGGTTCCCTTC
CAGGTGAGGGTCAGCTTGCCGGGTCGGGGAACCACGTAGTCGACGGCCTT
GTACTGATCGGCGTGGGCATGGCGACCGATCACAATANGCTTCTGCCAGC
CAGT
BS07372.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7176-PA | 1251 | Idh-RA | 364..1251 | 904..17 | 4396 | 99.7 | Minus |
| CG7176-PF | 1251 | Idh-RF | 364..1251 | 904..17 | 4396 | 99.7 | Minus |
| CG7176-PB | 1353 | Idh-RB | 466..1353 | 904..17 | 4396 | 99.7 | Minus |
| CG7176-PC | 1410 | Idh-RC | 523..1410 | 904..17 | 4396 | 99.7 | Minus |
| CG7176-PD | 1314 | Idh-RD | 427..1314 | 904..17 | 4396 | 99.7 | Minus |
| CG7176-PE | 1251 | Idh-RE | 364..1251 | 904..17 | 4396 | 99.7 | Minus |
| CG7176-PG | 1353 | Idh-RG | 466..1353 | 904..17 | 4396 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 11:32:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idh-RK | 1974 | CG7176-RK | 836..1723 | 904..17 | 4414 | 99.8 | Minus |
| Idh-RJ | 1899 | CG7176-RJ | 761..1648 | 904..17 | 4414 | 99.8 | Minus |
| Idh-RI | 1776 | CG7176-RI | 638..1525 | 904..17 | 4414 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 11:32:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8356655..8357542 | 17..904 | 4414 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-03 11:32:36 has no hits.
BS07372.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:10:58 Download gff for
BS07372.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idh-PB | 466..1353 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:00:28 Download gff for
BS07372.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7176-PG | 466..1353 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:41:11 Download gff for
BS07372.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idh-RI | 638..1530 | 9..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:34:19 Download gff for
BS07372.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idh-RI | 638..1530 | 9..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:34:19 Download gff for
BS07372.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8356650..8357542 | 9..904 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:41:11 Download gff for
BS07372.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8349750..8350642 | 9..904 | 99 | | Plus |
BS07372.5prime Sequence
890 bp (865 high quality bases) assembled on 2006-01-06
> BS07372.5prime
GAAGTTATCAGTCGACATGTTCGCCCTGCGCCGCACAGCCGCAATGATGA
CGTCGGTCCACCGGCAGCCGCATCTCAGCCAGGCCGTTTTTCGGGCCAAT
TTCGCCATCAGCGCCGCGATGGCCCAGAAGATCAAAGCCGGTCCCGTTGT
GGATGTCCTCGGTGACGAGATGACCCGCATCATTTGGGACTCCATTAAGA
GCCAACTGATTCTGCCCTTCCTGGACATTGAGCTGCATACCTACGATCTT
GGTATTGAGAACCGCGATAAAACCGAGGACCAGGTCACCATTGACTGTGC
TGAGGCCATCAAGAAGTACAACGTGGGCATCAAGTGCGCCACAATCACTC
CCGACGAGAAGCGCGTAGAGGAGTTCAACCTGAAGAAGATGTGGAAGTCG
CCCAACGGTACCATCCGTAACATCTTGGGAGGAACCGTCTTCCGTGAGGC
AATCATCTGCAAGAACGTGCCCCGTCTGGTGACTGGCTGGCAGAAGCCTA
TTGTGATCGGTCGCCATGCCCACGCCGATCAGTACAAGGCCGTCGACTAC
GTGGTTCCCGGACCCGGCAAGCTGACCCTCACCTGGAAGGGAACCGACGG
TCAGGTGATCGATGAGGTCATTAATGACTTCAAGGGCCCCGGTATTGCCC
TGGGAATGTTCAACACGGACGATTCCATTGTGGACTTTGCCCACGCCTCT
TTCAAATATGCTCTGGACCGCAAGCTGCCGCTGTACATGAGCACCAAGAA
CACCATTCTGAAGAAGTACGATGGACGCTTCAAGGACATATTCGAGGACC
TGTACAACAAGCAGTACAAGAAGGAGTACGAGGCGGCGGGCATCTGGTAT
GAACACCGTCTCATCGACGATATGGTTGCTTATGCCATGA
BS07372.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7176-PB | 1353 | Idh-RB | 1..874 | 17..890 | 4370 | 100 | Plus |
| CG7176-PG | 1353 | Idh-RG | 1..874 | 17..890 | 4370 | 100 | Plus |
| CG7176-PC | 1410 | Idh-RC | 159..931 | 118..890 | 3865 | 100 | Plus |
| CG7176-PD | 1314 | Idh-RD | 63..835 | 118..890 | 3865 | 100 | Plus |
| CG7176-PA | 1251 | Idh-RA | 1..772 | 119..890 | 3860 | 100 | Plus |
| CG7176-PF | 1251 | Idh-RF | 1..772 | 119..890 | 3860 | 100 | Plus |
| CG7176-PE | 1251 | Idh-RE | 1..772 | 119..890 | 3860 | 100 | Plus |
| CG7176-PC | 1410 | Idh-RC | 1..102 | 17..118 | 510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:50:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idh-RJ | 1899 | CG7176-RJ | 296..1169 | 17..890 | 4370 | 100 | Plus |
| Idh-RI | 1776 | CG7176-RI | 173..1046 | 17..890 | 4370 | 100 | Plus |
| Idh-RG | 1809 | CG7176-RG | 206..1079 | 17..890 | 4370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:50:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8357134..8357906 | 890..118 | 3865 | 100 | Minus |
| 3L | 28110227 | 3L | 8358556..8358657 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 01:50:17 has no hits.
BS07372.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:10:59 Download gff for
BS07372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idh-PB | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:00:30 Download gff for
BS07372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7176-PG | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:44:53 Download gff for
BS07372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idh-RG | 201..1078 | 11..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:32:21 Download gff for
BS07372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idh-RG | 201..1078 | 11..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:32:21 Download gff for
BS07372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8357135..8357905 | 119..889 | 100 | <- | Minus |
| 3L | 8358556..8358662 | 11..118 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:44:53 Download gff for
BS07372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8350235..8351005 | 119..889 | 100 | <- | Minus |
| arm_3L | 8351656..8351762 | 11..118 | 97 | | Minus |
BS07372.complete Sequence
1385 bp (1385 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635833
> BS07372.complete
GAAGTTATCAGTCGACATGTTCGCCCTGCGCCGCACAGCCGCAATGATGA
CGTCGGTCCACCGGCAGCCGCATCTCAGCCAGGCCGTTTTTCGGGCCAAT
TTCGCCATCAGCGCCGCGATGGCCCAGAAGATCAAAGCCGGTCCCGTTGT
GGATGTCCTCGGTGACGAGATGACCCGCATCATTTGGGACTCCATTAAGA
GCCAACTGATTCTGCCCTTCCTGGACATTGAGCTGCATACCTACGATCTT
GGTATTGAGAACCGCGATAAAACCGAGGACCAGGTCACCATTGACTGTGC
TGAGGCCATCAAGAAGTACAACGTGGGCATCAAGTGCGCCACAATCACTC
CCGACGAGAAGCGCGTAGAGGAGTTCAACCTGAAGAAGATGTGGAAGTCG
CCCAACGGTACCATCCGTAACATCTTGGGAGGAACCGTCTTCCGTGAGGC
AATCATCTGCAAGAACGTGCCCCGTCTGGTGACTGGCTGGCAGAAGCCTA
TTGTGATCGGTCGCCATGCCCACGCCGATCAGTACAAGGCCGTCGACTAC
GTGGTTCCCGGACCCGGCAAGCTGACCCTCACCTGGAAGGGAACCGACGG
TCAGGTGATCGATGAGGTCATTAATGACTTCAAGGGCCCCGGTATTGCCC
TGGGAATGTTCAACACGGACGATTCCATTGTGGACTTTGCCCACGCCTCT
TTCAAATATGCTCTGGACCGCAAGCTGCCGCTGTACATGAGCACCAAGAA
CACCATTCTGAAGAAGTACGATGGACGCTTCAAGGACATATTCGAGGACC
TGTACAACAAGCAGTACAAGAAGGAGTACGAGGCGGCGGGCATCTGGTAT
GAACACCGTCTCATCGACGATATGGTTGCTTATGCCATGAAGTCGGAGGG
TGGCTTCGTGTGGGCCTGCAAGAACTACGACGGTGATGTGCAGTCGGACT
CCGTTGCCCAGGGCTACGGATCTCTGGGTCTGATGACCTCCGTGCTGCTA
TGCCCCGATGGCAAGACCGTGGAGGCTGAAGCCGCTCACGGAACGGTGAC
GCGTCACTTCCGCTTCTACCAGCAGGGCAAGGAGACCTCCACCAACCCCA
TTGCCTCGATATTCGCCTGGACCCGTGGCCTGCTGCATCGTGCCAAGCTG
GACAACAATGAGCCACTGAAGCAGTTCGCCGACACCCTTGAGCAGGTGTG
CATCGACACAATTGAGAGCGGCGCCATGACCAAGGATCTGGCCATCTGCA
TTAAAGGCAACATCAACGCCGTTACTCGCAGGGACTACCAGGAGACTTTT
GAGTTCATTAACACGCTGGCCAAGAACCTGGAGGGTGCCCTGGCCAAGAA
TGCCGTTGCTGCCAAATGAAAGCTTTCTAGACCAT
BS07372.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:50:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idh-RJ | 1353 | CG7176-PJ | 1..1353 | 17..1369 | 6765 | 100 | Plus |
| Idh-RI | 1353 | CG7176-PI | 1..1353 | 17..1369 | 6765 | 100 | Plus |
| Idh-RG | 1353 | CG7176-PG | 1..1353 | 17..1369 | 6765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:50:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idh-RJ | 1899 | CG7176-RJ | 296..1648 | 17..1369 | 6765 | 100 | Plus |
| Idh-RI | 1776 | CG7176-RI | 173..1525 | 17..1369 | 6765 | 100 | Plus |
| Idh-RG | 1809 | CG7176-RG | 206..1558 | 17..1369 | 6765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:50:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8356655..8357906 | 1369..118 | 6260 | 100 | Minus |
| 3L | 28110227 | 3L | 8358556..8358657 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:50:28 has no hits.
BS07372.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:16 Download gff for
BS07372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idh-RG | 1..1353 | 17..1369 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:28 Download gff for
BS07372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idh-RG | 201..1563 | 11..1377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:09 Download gff for
BS07372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idh-RG | 211..1557 | 22..1368 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:16 Download gff for
BS07372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idh-RG | 201..1563 | 11..1377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:32:48 Download gff for
BS07372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idh-RG | 211..1557 | 22..1368 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:32:48 Download gff for
BS07372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8356656..8357905 | 119..1368 | 100 | <- | Minus |
| 3L | 8358556..8358652 | 22..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:09 Download gff for
BS07372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8351656..8351752 | 22..118 | 100 | | Minus |
| arm_3L | 8349756..8351005 | 119..1368 | 100 | <- | Minus |
BS07372.pep Sequence
Translation from 16 to 1368
> BS07372.pep
MFALRRTAAMMTSVHRQPHLSQAVFRANFAISAAMAQKIKAGPVVDVLGD
EMTRIIWDSIKSQLILPFLDIELHTYDLGIENRDKTEDQVTIDCAEAIKK
YNVGIKCATITPDEKRVEEFNLKKMWKSPNGTIRNILGGTVFREAIICKN
VPRLVTGWQKPIVIGRHAHADQYKAVDYVVPGPGKLTLTWKGTDGQVIDE
VINDFKGPGIALGMFNTDDSIVDFAHASFKYALDRKLPLYMSTKNTILKK
YDGRFKDIFEDLYNKQYKKEYEAAGIWYEHRLIDDMVAYAMKSEGGFVWA
CKNYDGDVQSDSVAQGYGSLGLMTSVLLCPDGKTVEAEAAHGTVTRHFRF
YQQGKETSTNPIASIFAWTRGLLHRAKLDNNEPLKQFADTLEQVCIDTIE
SGAMTKDLAICIKGNINAVTRRDYQETFEFINTLAKNLEGALAKNAVAAK
*
BS07372.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idh-PJ | 450 | CG7176-PJ | 1..450 | 1..450 | 2357 | 100 | Plus |
| Idh-PI | 450 | CG7176-PI | 1..450 | 1..450 | 2357 | 100 | Plus |
| Idh-PG | 450 | CG7176-PG | 1..450 | 1..450 | 2357 | 100 | Plus |
| Idh-PB | 450 | CG7176-PB | 1..450 | 1..450 | 2357 | 100 | Plus |
| Idh-PC | 469 | CG7176-PC | 1..469 | 1..450 | 2327 | 95.9 | Plus |
