Clone Sequence Records
BS07373.3prime Sequence
863 bp (862 high quality bases) assembled on 2006-01-06
> BS07373.3prime
ATGGTCTAGAAAGCTTTCATTGTTCCTCCTCCTCGATATTGTAAAAGTGG
GGCCATGTCTGTATCTCCTCGTACAATCGCCGACCAGGACTCTCCGTCGA
ATTGCACTGGCAGTGACAAATTAATCTATAGTCGGTGGATATGTGACCAT
CCTCAACGCCGCGGGCCAACAGATTGCGGCACATATTCAAGGCGTCTGCC
GTCGGGAGTTCTTTCATGAAGCATCCAATGAAACTGATCCCCAGCGAGAT
CCTGTTGTAACCCAGAGTGTGGGCGCCCACCGTTTTCCATCCGCGTCCCT
CGTAGATGTTGCCATCGCAGCCGACCAGGAAGTTGTACGCAATGTCATTC
CATCCCCGCGACTCAATGTGGAAGCACTGCATGTCACGGATAAGTCTTAC
GTTGATCGCCCGCTTTTCTGAACTCTCTGTAGCTGTGTGTAAGATAACCA
CATATTTAACAGGCAGTTGCAAGGGCAGTGGCTCGTCCATGGGCTTCTGT
GCTAGCCACGAAGAGCGCGGAATGATGGCGGACAGCTCCTTGGGTATTTT
GAATTTCTGGCGCCTGATGAACACATCCGAGCGCACCCTCTCCTCCGACT
CGTCCTGATAGTCGTCTTCGAAATGTGTCGGAGTTTTGGGAGCGTTATCT
CTCGGTGGTGAAACATGCCGCCGATCTCTTCGGTTTTGAGTAAGGCCATC
GGCTATGATTTGTATATTTCCATTAATATTGGTAACATTGCCGATATGGA
CGTTCGTGGAGTTGCTTATATTAACGTTGCCCAAAGTCTGAATGCTGTTG
ATCGAGTTCATAAGGTCCCTTATGGTGTCGCTGATGATCGAATGCTTTTT
GGTAGCGATTTGA
BS07373.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8995-PA | 1038 | PGRP-LE-RA | 192..1038 | 863..17 | 4235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:32:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LE-RB | 2073 | CG8995-RB | 1129..1975 | 863..17 | 4235 | 100 | Minus |
PGRP-LE-RA | 1398 | CG8995-RA | 454..1300 | 863..17 | 4235 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:32:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15801251..15801613 | 17..379 | 1815 | 100 | Plus |
X | 23542271 | X | 15802140..15802440 | 556..856 | 1505 | 100 | Plus |
X | 23542271 | X | 15801963..15802076 | 442..555 | 570 | 100 | Plus |
X | 23542271 | X | 15801683..15801747 | 377..441 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:32:53 has no hits.
BS07373.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:00 Download gff for
BS07373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8995-PA | 193..1038 | 17..862 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:00:31 Download gff for
BS07373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8995-PA | 193..1038 | 17..862 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:45:03 Download gff for
BS07373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LE-RA | 455..1300 | 17..862 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:08:49 Download gff for
BS07373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LE-RA | 455..1300 | 17..862 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:08:49 Download gff for
BS07373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15801251..15801610 | 17..376 | 100 | <- | Plus |
X | 15801683..15801747 | 377..441 | 100 | <- | Plus |
X | 15801963..15802076 | 442..555 | 100 | <- | Plus |
X | 15802140..15802443 | 556..862 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:45:03 Download gff for
BS07373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15695284..15695643 | 17..376 | 100 | <- | Plus |
arm_X | 15695716..15695780 | 377..441 | 100 | <- | Plus |
arm_X | 15695996..15696109 | 442..555 | 100 | <- | Plus |
arm_X | 15696173..15696476 | 556..862 | 99 | | Plus |
BS07373.5prime Sequence
855 bp (838 high quality bases) assembled on 2006-01-06
> BS07373.5prime
GAAGTTATCAGTCGACATGTCCGAATCGGGAATCAAAAAGTTGAGCCAGG
AGCGGACTCGCGAATGGTTGGCTAGTCAGGAGGACGAGGAACTGGAGTCC
ATTGCAGAGTCCTCGGTTGTGGACAGCTTGGACTACGATTATACCGAGGA
AGAGGAGGATGCCGACCAAAATACCAGTGAAGAAATCAGCACTATGACAC
TAGGCACTCAAATCGCTACCAAAAAGCATTCGATCATCAGCGACACCATA
AGGGACCTTATGAACTCGATCAACAGCATTCAGACTTTGGGCAACGTTAA
TATAAGCAACTCCACGAACGTCCATATCGGCAATGTTACCAATATTAATG
GAAATATACAAATCATAGCCGATGGCCTTACTCAAAACCGAAGAGATCGG
CGGCATGTTTCACCACCGAGAGATAACGCTCCCAAAACTCCGACACATTT
CGAAGACGACTATCAGGACGAGTCGGAGGAGAGGGTGCGCTCGGATGTGT
TCATCAGGCGCCAGAAATTCAAAATACCCAAGGAGCTGTCCGCCATCATT
CCGCGCTCTTCGTGGCTAGCACAGAAGCCCATGGACGAGCCACTGCCCTT
GCAACTGCCTGTTAAATATGTGGTTATCTTACACACAGCTACAGAGAGTT
CAGAAAAGCGGGCGATCAACGTAAGACTTATCCGTGACATGCAGTGCTTC
CACATTGAGTCGCGGGGATGGAATGACATTGCGTACAACTTCCTGGTCGG
CTGCGATGGCAACATCTACGAGGGACGCGGATGGAAAACGGTGGGCGCCC
ACACTCTGGGTTACAACAGGATCTCGCTGGGGATCAGTTTCATTGGATGC
TTCAT
BS07373.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8995-PA | 1038 | PGRP-LE-RA | 1..839 | 17..855 | 4195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:39:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LE-RB | 2073 | CG8995-RB | 935..1776 | 14..855 | 4210 | 100 | Plus |
PGRP-LE-RA | 1398 | CG8995-RA | 260..1101 | 14..855 | 4210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:39:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15802140..15802440 | 515..215 | 1505 | 100 | Minus |
X | 23542271 | X | 15802509..15802710 | 215..14 | 1010 | 100 | Minus |
X | 23542271 | X | 15801450..15801613 | 855..692 | 820 | 100 | Minus |
X | 23542271 | X | 15801963..15802076 | 629..516 | 570 | 100 | Minus |
X | 23542271 | X | 15801683..15801747 | 694..630 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:39:41 has no hits.
BS07373.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:01 Download gff for
BS07373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8995-PA | 1..839 | 17..855 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:00:33 Download gff for
BS07373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8995-PA | 1..839 | 17..855 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 07:47:49 Download gff for
BS07373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LE-RA | 256..1101 | 6..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:19:48 Download gff for
BS07373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LE-RA | 256..1101 | 6..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:19:48 Download gff for
BS07373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15801450..15801610 | 695..855 | 100 | <- | Minus |
X | 15801683..15801747 | 630..694 | 100 | <- | Minus |
X | 15801963..15802076 | 516..629 | 100 | <- | Minus |
X | 15802140..15802439 | 216..515 | 100 | <- | Minus |
X | 15802509..15802714 | 6..215 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 07:47:49 Download gff for
BS07373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15695483..15695643 | 695..855 | 100 | <- | Minus |
arm_X | 15695716..15695780 | 630..694 | 100 | <- | Minus |
arm_X | 15695996..15696109 | 516..629 | 100 | <- | Minus |
arm_X | 15696173..15696472 | 216..515 | 100 | <- | Minus |
arm_X | 15696542..15696747 | 6..215 | 98 | | Minus |
BS07373.complete Sequence
1070 bp (1070 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ638801
> BS07373.complete
GAAGTTATCAGTCGACATGTCCGAATCGGGAATCAAAAAGTTGAGCCAGG
AGCGGACTCGCGAATGGTTGGCTAGTCAGGAGGACGAGGAACTGGAGTCC
ATTGCAGAGTCCTCGGTTGTGGACAGCTTGGACTACGATTATACCGAGGA
AGAGGAGGATGCCGACCAAAATACCAGTGAAGAAATCAGCACTATGACAC
TAGGCACTCAAATCGCTACCAAAAAGCATTCGATCATCAGCGACACCATA
AGGGACCTTATGAACTCGATCAACAGCATTCAGACTTTGGGCAACGTTAA
TATAAGCAACTCCACGAACGTCCATATCGGCAATGTTACCAATATTAATG
GAAATATACAAATCATAGCCGATGGCCTTACTCAAAACCGAAGAGATCGG
CGGCATGTTTCACCACCGAGAGATAACGCTCCCAAAACTCCGACACATTT
CGAAGACGACTATCAGGACGAGTCGGAGGAGAGGGTGCGCTCGGATGTGT
TCATCAGGCGCCAGAAATTCAAAATACCCAAGGAGCTGTCCGCCATCATT
CCGCGCTCTTCGTGGCTAGCACAGAAGCCCATGGACGAGCCACTGCCCTT
GCAACTGCCTGTTAAATATGTGGTTATCTTACACACAGCTACAGAGAGTT
CAGAAAAGCGGGCGATCAACGTAAGACTTATCCGTGACATGCAGTGCTTC
CACATTGAGTCGCGGGGATGGAATGACATTGCGTACAACTTCCTGGTCGG
CTGCGATGGCAACATCTACGAGGGACGCGGATGGAAAACGGTGGGCGCCC
ACACTCTGGGTTACAACAGGATCTCGCTGGGGATCAGTTTCATTGGATGC
TTCATGAAAGAACTCCCGACGGCAGACGCCTTGAATATGTGCCGCAATCT
GTTGGCCCGCGGCGTTGAGGATGGTCACATATCCACCGACTATAGATTAA
TTTGTCACTGCCAGTGCAATTCGACGGAGAGTCCTGGTCGGCGATTGTAC
GAGGAGATACAGACATGGCCCCACTTTTACAATATCGAGGAGGAGGAACA
ATGAAAGCTTTCTAGACCAT
BS07373.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:55:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LE-RB | 1038 | CG8995-PB | 1..1038 | 17..1054 | 5190 | 100 | Plus |
PGRP-LE-RA | 1038 | CG8995-PA | 1..1038 | 17..1054 | 5190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:55:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LE-RB | 2073 | CG8995-RB | 935..1975 | 14..1054 | 5205 | 100 | Plus |
PGRP-LE-RA | 1398 | CG8995-RA | 260..1300 | 14..1054 | 5205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:55:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15801251..15801613 | 1054..692 | 1815 | 100 | Minus |
X | 23542271 | X | 15802140..15802440 | 515..215 | 1505 | 100 | Minus |
X | 23542271 | X | 15802509..15802710 | 215..14 | 1010 | 100 | Minus |
X | 23542271 | X | 15801963..15802076 | 629..516 | 570 | 100 | Minus |
X | 23542271 | X | 15801683..15801747 | 694..630 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:55:11 has no hits.
BS07373.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:17 Download gff for
BS07373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LE-RA | 1..1038 | 17..1054 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:29 Download gff for
BS07373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LE-RA | 212..1256 | 6..1054 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:55 Download gff for
BS07373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LE-RA | 263..1299 | 17..1053 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:17 Download gff for
BS07373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LE-RA | 212..1256 | 6..1054 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:00 Download gff for
BS07373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LE-RA | 263..1299 | 17..1053 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:00 Download gff for
BS07373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15802140..15802439 | 216..515 | 100 | <- | Minus |
X | 15802509..15802707 | 17..215 | 100 | | Minus |
X | 15801252..15801610 | 695..1053 | 100 | <- | Minus |
X | 15801683..15801747 | 630..694 | 100 | <- | Minus |
X | 15801963..15802076 | 516..629 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:55 Download gff for
BS07373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15695285..15695643 | 695..1053 | 100 | <- | Minus |
arm_X | 15695716..15695780 | 630..694 | 100 | <- | Minus |
arm_X | 15695996..15696109 | 516..629 | 100 | <- | Minus |
arm_X | 15696173..15696472 | 216..515 | 100 | <- | Minus |
arm_X | 15696542..15696740 | 17..215 | 100 | | Minus |
BS07373.pep Sequence
Translation from 16 to 1053
> BS07373.pep
MSESGIKKLSQERTREWLASQEDEELESIAESSVVDSLDYDYTEEEEDAD
QNTSEEISTMTLGTQIATKKHSIISDTIRDLMNSINSIQTLGNVNISNST
NVHIGNVTNINGNIQIIADGLTQNRRDRRHVSPPRDNAPKTPTHFEDDYQ
DESEERVRSDVFIRRQKFKIPKELSAIIPRSSWLAQKPMDEPLPLQLPVK
YVVILHTATESSEKRAINVRLIRDMQCFHIESRGWNDIAYNFLVGCDGNI
YEGRGWKTVGAHTLGYNRISLGISFIGCFMKELPTADALNMCRNLLARGV
EDGHISTDYRLICHCQCNSTESPGRRLYEEIQTWPHFYNIEEEEQ*
BS07373.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LE-PB | 345 | CG8995-PB | 1..345 | 1..345 | 1813 | 100 | Plus |
PGRP-LE-PA | 345 | CG8995-PA | 1..345 | 1..345 | 1813 | 100 | Plus |
PGRP-LC-PE | 329 | CG4432-PE | 184..325 | 196..337 | 382 | 52.1 | Plus |
PGRP-LC-PD | 500 | CG4432-PD | 355..496 | 196..337 | 382 | 52.1 | Plus |
PGRP-LC-PA | 500 | CG4432-PA | 355..496 | 196..337 | 382 | 52.1 | Plus |