Clone BS07373 Report

Search the DGRC for BS07373

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:73
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptPGRP-LE-RA
Protein status:BS07373.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07373.3prime Sequence

863 bp (862 high quality bases) assembled on 2006-01-06

> BS07373.3prime
ATGGTCTAGAAAGCTTTCATTGTTCCTCCTCCTCGATATTGTAAAAGTGG
GGCCATGTCTGTATCTCCTCGTACAATCGCCGACCAGGACTCTCCGTCGA
ATTGCACTGGCAGTGACAAATTAATCTATAGTCGGTGGATATGTGACCAT
CCTCAACGCCGCGGGCCAACAGATTGCGGCACATATTCAAGGCGTCTGCC
GTCGGGAGTTCTTTCATGAAGCATCCAATGAAACTGATCCCCAGCGAGAT
CCTGTTGTAACCCAGAGTGTGGGCGCCCACCGTTTTCCATCCGCGTCCCT
CGTAGATGTTGCCATCGCAGCCGACCAGGAAGTTGTACGCAATGTCATTC
CATCCCCGCGACTCAATGTGGAAGCACTGCATGTCACGGATAAGTCTTAC
GTTGATCGCCCGCTTTTCTGAACTCTCTGTAGCTGTGTGTAAGATAACCA
CATATTTAACAGGCAGTTGCAAGGGCAGTGGCTCGTCCATGGGCTTCTGT
GCTAGCCACGAAGAGCGCGGAATGATGGCGGACAGCTCCTTGGGTATTTT
GAATTTCTGGCGCCTGATGAACACATCCGAGCGCACCCTCTCCTCCGACT
CGTCCTGATAGTCGTCTTCGAAATGTGTCGGAGTTTTGGGAGCGTTATCT
CTCGGTGGTGAAACATGCCGCCGATCTCTTCGGTTTTGAGTAAGGCCATC
GGCTATGATTTGTATATTTCCATTAATATTGGTAACATTGCCGATATGGA
CGTTCGTGGAGTTGCTTATATTAACGTTGCCCAAAGTCTGAATGCTGTTG
ATCGAGTTCATAAGGTCCCTTATGGTGTCGCTGATGATCGAATGCTTTTT
GGTAGCGATTTGA

BS07373.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG8995-PA 1038 PGRP-LE-RA 192..1038 863..17 4235 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LE-RB 2073 CG8995-RB 1129..1975 863..17 4235 100 Minus
PGRP-LE-RA 1398 CG8995-RA 454..1300 863..17 4235 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:32:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15801251..15801613 17..379 1815 100 Plus
X 23542271 X 15802140..15802440 556..856 1505 100 Plus
X 23542271 X 15801963..15802076 442..555 570 100 Plus
X 23542271 X 15801683..15801747 377..441 325 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:32:53 has no hits.

BS07373.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:00 Download gff for BS07373.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8995-PA 193..1038 17..862 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:00:31 Download gff for BS07373.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8995-PA 193..1038 17..862 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:45:03 Download gff for BS07373.3prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LE-RA 455..1300 17..862 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:08:49 Download gff for BS07373.3prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LE-RA 455..1300 17..862 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:08:49 Download gff for BS07373.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15801251..15801610 17..376 100 <- Plus
X 15801683..15801747 377..441 100 <- Plus
X 15801963..15802076 442..555 100 <- Plus
X 15802140..15802443 556..862 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:45:03 Download gff for BS07373.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15695284..15695643 17..376 100 <- Plus
arm_X 15695716..15695780 377..441 100 <- Plus
arm_X 15695996..15696109 442..555 100 <- Plus
arm_X 15696173..15696476 556..862 99   Plus

BS07373.5prime Sequence

855 bp (838 high quality bases) assembled on 2006-01-06

> BS07373.5prime
GAAGTTATCAGTCGACATGTCCGAATCGGGAATCAAAAAGTTGAGCCAGG
AGCGGACTCGCGAATGGTTGGCTAGTCAGGAGGACGAGGAACTGGAGTCC
ATTGCAGAGTCCTCGGTTGTGGACAGCTTGGACTACGATTATACCGAGGA
AGAGGAGGATGCCGACCAAAATACCAGTGAAGAAATCAGCACTATGACAC
TAGGCACTCAAATCGCTACCAAAAAGCATTCGATCATCAGCGACACCATA
AGGGACCTTATGAACTCGATCAACAGCATTCAGACTTTGGGCAACGTTAA
TATAAGCAACTCCACGAACGTCCATATCGGCAATGTTACCAATATTAATG
GAAATATACAAATCATAGCCGATGGCCTTACTCAAAACCGAAGAGATCGG
CGGCATGTTTCACCACCGAGAGATAACGCTCCCAAAACTCCGACACATTT
CGAAGACGACTATCAGGACGAGTCGGAGGAGAGGGTGCGCTCGGATGTGT
TCATCAGGCGCCAGAAATTCAAAATACCCAAGGAGCTGTCCGCCATCATT
CCGCGCTCTTCGTGGCTAGCACAGAAGCCCATGGACGAGCCACTGCCCTT
GCAACTGCCTGTTAAATATGTGGTTATCTTACACACAGCTACAGAGAGTT
CAGAAAAGCGGGCGATCAACGTAAGACTTATCCGTGACATGCAGTGCTTC
CACATTGAGTCGCGGGGATGGAATGACATTGCGTACAACTTCCTGGTCGG
CTGCGATGGCAACATCTACGAGGGACGCGGATGGAAAACGGTGGGCGCCC
ACACTCTGGGTTACAACAGGATCTCGCTGGGGATCAGTTTCATTGGATGC
TTCAT

BS07373.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG8995-PA 1038 PGRP-LE-RA 1..839 17..855 4195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:39:43
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LE-RB 2073 CG8995-RB 935..1776 14..855 4210 100 Plus
PGRP-LE-RA 1398 CG8995-RA 260..1101 14..855 4210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:39:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15802140..15802440 515..215 1505 100 Minus
X 23542271 X 15802509..15802710 215..14 1010 100 Minus
X 23542271 X 15801450..15801613 855..692 820 100 Minus
X 23542271 X 15801963..15802076 629..516 570 100 Minus
X 23542271 X 15801683..15801747 694..630 325 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:39:41 has no hits.

BS07373.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:01 Download gff for BS07373.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8995-PA 1..839 17..855 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:00:33 Download gff for BS07373.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8995-PA 1..839 17..855 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 07:47:49 Download gff for BS07373.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LE-RA 256..1101 6..855 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:19:48 Download gff for BS07373.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LE-RA 256..1101 6..855 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:19:48 Download gff for BS07373.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15801450..15801610 695..855 100 <- Minus
X 15801683..15801747 630..694 100 <- Minus
X 15801963..15802076 516..629 100 <- Minus
X 15802140..15802439 216..515 100 <- Minus
X 15802509..15802714 6..215 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 07:47:49 Download gff for BS07373.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15695483..15695643 695..855 100 <- Minus
arm_X 15695716..15695780 630..694 100 <- Minus
arm_X 15695996..15696109 516..629 100 <- Minus
arm_X 15696173..15696472 216..515 100 <- Minus
arm_X 15696542..15696747 6..215 98   Minus

BS07373.complete Sequence

1070 bp (1070 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ638801

> BS07373.complete
GAAGTTATCAGTCGACATGTCCGAATCGGGAATCAAAAAGTTGAGCCAGG
AGCGGACTCGCGAATGGTTGGCTAGTCAGGAGGACGAGGAACTGGAGTCC
ATTGCAGAGTCCTCGGTTGTGGACAGCTTGGACTACGATTATACCGAGGA
AGAGGAGGATGCCGACCAAAATACCAGTGAAGAAATCAGCACTATGACAC
TAGGCACTCAAATCGCTACCAAAAAGCATTCGATCATCAGCGACACCATA
AGGGACCTTATGAACTCGATCAACAGCATTCAGACTTTGGGCAACGTTAA
TATAAGCAACTCCACGAACGTCCATATCGGCAATGTTACCAATATTAATG
GAAATATACAAATCATAGCCGATGGCCTTACTCAAAACCGAAGAGATCGG
CGGCATGTTTCACCACCGAGAGATAACGCTCCCAAAACTCCGACACATTT
CGAAGACGACTATCAGGACGAGTCGGAGGAGAGGGTGCGCTCGGATGTGT
TCATCAGGCGCCAGAAATTCAAAATACCCAAGGAGCTGTCCGCCATCATT
CCGCGCTCTTCGTGGCTAGCACAGAAGCCCATGGACGAGCCACTGCCCTT
GCAACTGCCTGTTAAATATGTGGTTATCTTACACACAGCTACAGAGAGTT
CAGAAAAGCGGGCGATCAACGTAAGACTTATCCGTGACATGCAGTGCTTC
CACATTGAGTCGCGGGGATGGAATGACATTGCGTACAACTTCCTGGTCGG
CTGCGATGGCAACATCTACGAGGGACGCGGATGGAAAACGGTGGGCGCCC
ACACTCTGGGTTACAACAGGATCTCGCTGGGGATCAGTTTCATTGGATGC
TTCATGAAAGAACTCCCGACGGCAGACGCCTTGAATATGTGCCGCAATCT
GTTGGCCCGCGGCGTTGAGGATGGTCACATATCCACCGACTATAGATTAA
TTTGTCACTGCCAGTGCAATTCGACGGAGAGTCCTGGTCGGCGATTGTAC
GAGGAGATACAGACATGGCCCCACTTTTACAATATCGAGGAGGAGGAACA
ATGAAAGCTTTCTAGACCAT

BS07373.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LE-RB 1038 CG8995-PB 1..1038 17..1054 5190 100 Plus
PGRP-LE-RA 1038 CG8995-PA 1..1038 17..1054 5190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LE-RB 2073 CG8995-RB 935..1975 14..1054 5205 100 Plus
PGRP-LE-RA 1398 CG8995-RA 260..1300 14..1054 5205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15801251..15801613 1054..692 1815 100 Minus
X 23542271 X 15802140..15802440 515..215 1505 100 Minus
X 23542271 X 15802509..15802710 215..14 1010 100 Minus
X 23542271 X 15801963..15802076 629..516 570 100 Minus
X 23542271 X 15801683..15801747 694..630 325 100 Minus
Blast to na_te.dros performed on 2014-11-27 06:55:11 has no hits.

BS07373.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:17 Download gff for BS07373.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LE-RA 1..1038 17..1054 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:29 Download gff for BS07373.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LE-RA 212..1256 6..1054 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:55 Download gff for BS07373.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LE-RA 263..1299 17..1053 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:17 Download gff for BS07373.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LE-RA 212..1256 6..1054 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:00 Download gff for BS07373.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LE-RA 263..1299 17..1053 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:00 Download gff for BS07373.complete
Subject Subject Range Query Range Percent Splice Strand
X 15802140..15802439 216..515 100 <- Minus
X 15802509..15802707 17..215 100   Minus
X 15801252..15801610 695..1053 100 <- Minus
X 15801683..15801747 630..694 100 <- Minus
X 15801963..15802076 516..629 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:55 Download gff for BS07373.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15695285..15695643 695..1053 100 <- Minus
arm_X 15695716..15695780 630..694 100 <- Minus
arm_X 15695996..15696109 516..629 100 <- Minus
arm_X 15696173..15696472 216..515 100 <- Minus
arm_X 15696542..15696740 17..215 100   Minus

BS07373.pep Sequence

Translation from 16 to 1053

> BS07373.pep
MSESGIKKLSQERTREWLASQEDEELESIAESSVVDSLDYDYTEEEEDAD
QNTSEEISTMTLGTQIATKKHSIISDTIRDLMNSINSIQTLGNVNISNST
NVHIGNVTNINGNIQIIADGLTQNRRDRRHVSPPRDNAPKTPTHFEDDYQ
DESEERVRSDVFIRRQKFKIPKELSAIIPRSSWLAQKPMDEPLPLQLPVK
YVVILHTATESSEKRAINVRLIRDMQCFHIESRGWNDIAYNFLVGCDGNI
YEGRGWKTVGAHTLGYNRISLGISFIGCFMKELPTADALNMCRNLLARGV
EDGHISTDYRLICHCQCNSTESPGRRLYEEIQTWPHFYNIEEEEQ*

BS07373.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LE-PB 345 CG8995-PB 1..345 1..345 1813 100 Plus
PGRP-LE-PA 345 CG8995-PA 1..345 1..345 1813 100 Plus
PGRP-LC-PE 329 CG4432-PE 184..325 196..337 382 52.1 Plus
PGRP-LC-PD 500 CG4432-PD 355..496 196..337 382 52.1 Plus
PGRP-LC-PA 500 CG4432-PA 355..496 196..337 382 52.1 Plus