Clone BS07380 Report

Search the DGRC for BS07380

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:73
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptS-Lap3-RB
Protein status:BS07380.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07380.3prime Sequence

937 bp (847 high quality bases) assembled on 2006-01-06

> BS07380.3prime
ATGGTCTAGAAAGCTTTTATTTAGGCTGTTCGGGGCAGGCGATTTGGTAG
AGGAACTGCACCAATGTCCTGGTCGGTCTGCCAGTCATCCTGCCAGCTGT
CAAGTAGGGTATCAATCCATATGTGCTCAATAGTCCAGTACCATAGGTAT
CCAAATGGGCCCAATCGCTGCAGGGCACGAGTTCGTGGAGAACAGCAGCT
GCCAGGCAAGACGAGGCATATCCCTCGCCATCGTTCAGTAGGTCGAAGCT
CAGGTGCTCTGCCACACGATCCTTGTAGTAGCGCCATAAGGGGAATCGCC
ACAAGCGATCACCGGTCAAGGAACCGGCACGCTGGAATTGTTTCCATATA
TAGTGAGAATTCGACCAAATACCAGTGGCTCCACCGCCAACTGCCTTCTT
TACGCCCTTGCACATGGAGCCCACATCCACGACGAGTCTGGGCTTGTATG
TTATCTGACCATAAAGCATGGGATCCGAGATGACCACCACTCCTGTTCGA
CTTATATTACGCACCGCCAGAGATTTGGAATTGAGTAAGGTCACCACATC
GCCAGGCTTGCAGGACATTCCAGACGGCAGATTCTCGCACAGTGGTATCA
CAGCAGTTATATTGATGGGCAAAGATAGAGCAGCTGCTGCGCGCATGGCG
GCCAAAATGCATGCCGCTCCAGTGAGATCTCCGCGGAATTCATCCATGCC
CTTGCAAGGACGCAGATTGATGCCACCTGAATTGAAGGTTATGCCTTGAC
CCACCAGCAGAATGGGCTTATCTTCCGGTGCGGTGCCGCAATAGGCCACC
TCAAGGAGAACGGGTGGTTCGCAACTGCCTTTGGCAATCATCAGGAAGGA
GTTCAGATGTTGCTGTTCAATCCATTCCATGGTGCGAACCTCTACGGTGA
TGCCGCATGGGCATAGTGAATCCACTGCAGCCTGTGC

BS07380.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG32063-PB 1608 CG32063-RB 688..1608 937..17 4605 100 Minus
CG32063-PA 1608 CG32063-RA 688..1608 937..17 4605 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:54:11
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap3-RD 2640 CG32063-RD 865..1785 937..17 4605 100 Minus
S-Lap3-RC 2146 CG32063-RC 865..1785 937..17 4605 100 Minus
S-Lap3-RB 2520 CG32063-RB 1239..2159 937..17 4605 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10467199..10468119 937..17 4605 100 Minus
2R 25286936 2R 13778636..13779273 297..934 445 71.3 Plus
3L 28110227 3L 10491852..10492433 913..332 345 71.4 Minus
2R 25286936 2R 13597566..13597741 925..750 280 77.3 Minus
2R 25286936 2R 16492149..16492486 880..543 235 71.3 Minus
Blast to na_te.dros performed on 2015-02-12 03:54:10 has no hits.

BS07380.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:11 Download gff for BS07380.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32063-PA 688..1608 17..937 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:00:47 Download gff for BS07380.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32063-PA 688..1608 17..937 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:55:58 Download gff for BS07380.3prime
Subject Subject Range Query Range Percent Splice Strand
S-Lap3-RB 1239..2169 8..937 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:23 Download gff for BS07380.3prime
Subject Subject Range Query Range Percent Splice Strand
S-Lap3-RB 1239..2169 8..937 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:23 Download gff for BS07380.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10467199..10468129 8..937 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:55:58 Download gff for BS07380.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10460299..10461229 8..937 99   Minus

BS07380.5prime Sequence

859 bp (837 high quality bases) assembled on 2006-01-06

> BS07380.5prime
GAAGTTATCAGTCGACATGCGTGGACAACTGTTGCTGAAGGGACCCGCAT
TGGCGAGGAGCTTGAGCCGGTGCCGCGTAAGTGCCGTGCCCCAAATTGGA
TCTGTTCGTCATGTGACCGCCGGCTGTGCAGCTGGTGATACCGTCAAGGG
CGGCAAAGGAATCGTCTTGGGCCTCTACGAAAAGGAGTCGGGCAAGGGAC
CTCGATTAACGCCTGCTGGCGAAAAGTTTGACGATCGTGTGCAGGGCAAG
CTATCGGAATTGGTTTGCGAAACCAAATTAACTGGACGATTGGGTCGCGG
CAAGGTCTTCAACAATGTGGACAGCGAGTTCAGATCCATTTGCGTGGTGG
GCGTTGGTCTCGAAGGCATAGCCTTTAATGAACTGGAAATGCTGGACGAG
GGTATGGAGAATGTGCGCATAGCTGCTGGAATCGGTGCCCGATCATTACA
AAGTATTGGCTGCTCGGAAGTGCATGTGGATAATATGGACTATGCCGAAC
AGGCAGCCGAAGGTGCTGCACTGGCCATTTGGCGATATGAGGAGAATCTG
GCGAAGAAGTATCGTAGCACTATACCGAAACTGGAGCTGCATGGTTCACC
GGATGTCGAGTCCTGGACAAGGGGCCTCTTCAAGGCAGAGGCACAGAATT
TGGCCAGAAGACTGTGTGATGCCCCAGCCAATTGTATGACACCGACAATT
GTGGCACAGGCTGCAGTGGATTCACTATGCCCATGCGGCATCACCGTAGA
GGTTCGCACCATGGAATGGATTGAACAGCAACATCTGAACTCCTTCCTGA
TGATTGCCAAAGGCAGTTGCGAACCACCCGTTCTCCTTGAGGTGGCCTAT
TGCGGCACC

BS07380.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG32063-PB 1608 CG32063-RB 1..843 17..859 4215 100 Plus
CG32063-PA 1608 CG32063-RA 1..843 17..859 4215 100 Plus
CG13340-PA 1584 CG13340-RA 340..372 377..409 165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:26:18
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap3-RD 2640 CG32063-RD 178..1020 17..859 4215 100 Plus
S-Lap3-RC 2146 CG32063-RC 178..1020 17..859 4215 100 Plus
S-Lap3-RB 2520 CG32063-RB 552..1394 17..859 4215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:26:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10466512..10467354 17..859 4215 100 Plus
3L 28110227 3L 10491331..10491983 207..859 565 72.4 Plus
2R 25286936 2R 13779121..13779696 859..284 420 71.5 Minus
2R 25286936 2R 13597423..13597708 573..858 335 74.5 Plus
Blast to na_te.dros performed on 2015-02-13 00:26:15 has no hits.

BS07380.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:13 Download gff for BS07380.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32063-PA 1..843 17..859 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:00:48 Download gff for BS07380.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32063-PA 1..843 17..859 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:24:22 Download gff for BS07380.5prime
Subject Subject Range Query Range Percent Splice Strand
S-Lap3-RB 552..1394 17..859 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:56:56 Download gff for BS07380.5prime
Subject Subject Range Query Range Percent Splice Strand
S-Lap3-RB 552..1394 17..859 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:56:56 Download gff for BS07380.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10466512..10467354 17..859 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:24:22 Download gff for BS07380.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10459612..10460454 17..859 100   Plus

BS07380.complete Sequence

1640 bp (1640 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635834

> BS07380.complete
GAAGTTATCAGTCGACATGCGTGGACAACTGTTGCTGAAGGGACCCGCAT
TGGCGAGGAGCTTGAGCCGGTGCCGCGTAAGTGCCGTGCCCCAAATTGGA
TCTGTTCGTCATGTGACCGCCGGCTGTGCAGCTGGTGATACCGTCAAGGG
CGGCAAAGGAATCGTCTTGGGCCTCTACGAAAAGGAGTCGGGCAAGGGAC
CTCGATTAACGCCTGCTGGCGAAAAGTTTGACGATCGTGTGCAGGGCAAG
CTATCGGAATTGGTTTGCGAAACCAAATTAACTGGACGATTGGGTCGCGG
CAAGGTCTTCAACAATGTGGACAGCGAGTTCAGATCCATTTGCGTGGTGG
GCGTTGGTCTCGAAGGCATAGCCTTTAATGAACTGGAAATGCTGGACGAG
GGTATGGAGAATGTGCGCATAGCTGCTGGAATCGGTGCCCGATCATTACA
AAGTATTGGCTGCTCGGAAGTGCATGTGGATAATATGGACTATGCCGAAC
AGGCAGCCGAAGGTGCTGCACTGGCCATTTGGCGATATGAGGAGAATCTG
GCGAAGAAGTATCGTAGCACTATACCGAAACTGGAGCTGCATGGTTCACC
GGATGTCGAGTCCTGGACAAGGGGCCTCTTCAAGGCAGAGGCACAGAATT
TGGCCAGAAGACTGTGTGATGCCCCAGCCAATTGTATGACACCGACAATT
GTGGCACAGGCTGCAGTGGATTCACTATGCCCATGCGGCATCACCGTAGA
GGTTCGCACCATGGAATGGATTGAACAGCAACATCTGAACTCCTTCCTGA
TGATTGCCAAAGGCAGTTGCGAACCACCCGTTCTCCTTGAGGTGGCCTAT
TGCGGCACCGCACCGGAAGATAAGCCCATTCTGCTGGTGGGTCAAGGCAT
AACCTTCAATTCAGGTGGCATCAATCTGCGTCCTTGCAAGGGCATGGATG
AATTCCGCGGAGATCTCACTGGAGCGGCATGCATTTTGGCCGCCATGCGC
GCAGCAGCTGCTCTATCTTTGCCCATCAATATAACTGCTGTGATACCACT
GTGCGAGAATCTGCCGTCTGGAATGTCCTGCAAGCCTGGCGATGTGGTGA
CCTTACTCAATTCCAAATCTCTGGCGGTGCGTAATATAAGTCGAACAGGA
GTGGTGGTCATCTCGGATCCCATGCTTTATGGTCAGATAACATACAAGCC
CAGACTCGTCGTGGATGTGGGCTCCATGTGCAAGGGCGTAAAGAAGGCAG
TTGGCGGTGGAGCCACTGGTATTTGGTCGAATTCTCACTATATATGGAAA
CAATTCCAGCGTGCCGGTTCCTTGACCGGTGATCGCTTGTGGCGATTCCC
CTTATGGCGCTACTACAAGGATCGTGTGGCAGAGCACCTGAGCTTCGACC
TACTGAACGATGGCGAGGGATATGCCTCGTCTTGCCTGGCAGCTGCTGTT
CTCCACGAACTCGTGCCCTGCAGCGATTGGGCCCATTTGGATACCTATGG
TACTGGACTATTGAGCACATATGGATTGATACCCTACTTGACAGCTGGCA
GGATGACTGGCAGACCGACCAGGACATTGGTGCAGTTCCTCTACCAAATC
GCCTGCCCCGAACAGCCTAAATAAAAGCTTTCTAGACCAT

BS07380.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:58:23
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap3-RD 1608 CG32063-PD 1..1608 17..1624 8040 100 Plus
S-Lap3-RC 1608 CG32063-PC 1..1608 17..1624 8040 100 Plus
S-Lap3-RB 1608 CG32063-PB 1..1608 17..1624 8040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap3-RD 2640 CG32063-RD 178..1785 17..1624 8040 100 Plus
S-Lap3-RC 2146 CG32063-RC 178..1785 17..1624 8040 100 Plus
S-Lap3-RB 2520 CG32063-RB 552..2159 17..1624 8040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10466512..10468119 17..1624 8040 100 Plus
3L 28110227 3L 10491331..10492433 207..1309 640 71 Plus
2R 25286936 2R 13778636..13779696 1344..284 640 70.7 Minus
2R 25286936 2R 13597423..13597741 573..891 410 75.2 Plus
2R 25286936 2R 16491861..16492486 473..1098 295 69.8 Plus
Blast to na_te.dros performed on 2014-11-27 10:58:22 has no hits.

BS07380.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:20 Download gff for BS07380.complete
Subject Subject Range Query Range Percent Splice Strand
CG32063-RA 1..1608 17..1624 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:33 Download gff for BS07380.complete
Subject Subject Range Query Range Percent Splice Strand
CG32063-RA 368..1985 17..1633 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:29 Download gff for BS07380.complete
Subject Subject Range Query Range Percent Splice Strand
S-Lap3-RB 552..2157 17..1622 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:20 Download gff for BS07380.complete
Subject Subject Range Query Range Percent Splice Strand
CG32063-RA 368..1985 17..1633 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:33 Download gff for BS07380.complete
Subject Subject Range Query Range Percent Splice Strand
S-Lap3-RB 552..2157 17..1622 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:33 Download gff for BS07380.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10466512..10468117 17..1622 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:29 Download gff for BS07380.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10459612..10461217 17..1622 100   Plus

BS07380.pep Sequence

Translation from 16 to 1623

> BS07380.pep
MRGQLLLKGPALARSLSRCRVSAVPQIGSVRHVTAGCAAGDTVKGGKGIV
LGLYEKESGKGPRLTPAGEKFDDRVQGKLSELVCETKLTGRLGRGKVFNN
VDSEFRSICVVGVGLEGIAFNELEMLDEGMENVRIAAGIGARSLQSIGCS
EVHVDNMDYAEQAAEGAALAIWRYEENLAKKYRSTIPKLELHGSPDVESW
TRGLFKAEAQNLARRLCDAPANCMTPTIVAQAAVDSLCPCGITVEVRTME
WIEQQHLNSFLMIAKGSCEPPVLLEVAYCGTAPEDKPILLVGQGITFNSG
GINLRPCKGMDEFRGDLTGAACILAAMRAAAALSLPINITAVIPLCENLP
SGMSCKPGDVVTLLNSKSLAVRNISRTGVVVISDPMLYGQITYKPRLVVD
VGSMCKGVKKAVGGGATGIWSNSHYIWKQFQRAGSLTGDRLWRFPLWRYY
KDRVAEHLSFDLLNDGEGYASSCLAAAVLHELVPCSDWAHLDTYGTGLLS
TYGLIPYLTAGRMTGRPTRTLVQFLYQIACPEQPK*

BS07380.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:21
Subject Length Description Subject Range Query Range Score Percent Strand
S-Lap3-PD 535 CG32063-PD 1..535 1..535 2802 100 Plus
S-Lap3-PC 535 CG32063-PC 1..535 1..535 2802 100 Plus
S-Lap3-PB 535 CG32063-PB 1..535 1..535 2802 100 Plus
S-Lap7-PB 527 CG13340-PB 10..525 15..532 1989 70.8 Plus
S-Lap7-PA 527 CG13340-PA 10..525 15..532 1989 70.8 Plus