Clone Sequence Records
BS07383.3prime Sequence
913 bp (834 high quality bases) assembled on 2006-01-09
> BS07383.3prime
ATGGTCTAGAAAGCTTTCATGCACCCACTCCTGCCGCCGTTGACAGATGA
ACTGCCTGCAGCATGACCGACTTGAGGTCCCGGGCTAGGTTGTTGATGTG
GACCACCGAATCGACCATTTCCTGGACTGCACTACCGCTGGGGAAGTGGG
CTGCCGCCTTCTTTGACTTCAAGACGCACGTTTTTAGGGCATCGGAGAGG
GCGTTGGTGCAGCGCAGGATTTTCTCCCGCAGTGCCTCCTTCGAAATATT
TCGGTAAACGTTGTCGCCTATGGTCACCAAGTTGTGGGCGCTCACGACCA
CAAACTTTCCGTATGCAATGAAGAACTTGGGCGGCTGGTTCTTTTCTACT
GTCTCCAGGAAGGAATCAATGGCCTGCATCAAGTTTCCCATATGAGTAGA
GATCTGTTGGGCATAGTAGCGCACCAGCTTCTTGTCTTTGTCGGTCATCT
CTGGCGACTTGCAGGGCGTAGTAGGTGTCGTGCGTGCCGTGGGCGTGGTT
GGAATTGATCCAGACCCAGCGCCCATGGCTGAACTCTCAGCAGTCCGGAT
AACCGTATCGAACTGCGTTTTCAGGTCGGCGGGAATAGCCTCACGTAGCG
CCTCGTTTTTCCTGGCAGCTGCATCCTTGGACTCAAAGGCCACATAGTCG
TAGTCCTCCAACCATTCAGCGCTGCCCCGACTGCCCTCTAACACTCCCGT
TCCTGATCCTCCGTTGTGACCCACCGTCAGCTGCCGCTTAAAAAGTAGCG
AGGCGTTGCCCTGTATGAAACTGGTGGTTGAGCGCACGTCCTCAGTGAGC
GTCTGGGCACAAACCATCAGTTGGTCCAGTGCGTCCGGGGGTCGGCAGCC
GTGCTTCTCGTCGCTTCTGGCCAGCTGATCTATAGACCAGGCTCCCTGGG
CATCGAGGGATTC
BS07383.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1212-PA | 2382 | p130CAS-RA | 1486..2382 | 913..17 | 4485 | 100 | Minus |
| CG1212-PB | 1707 | p130CAS-RB | 811..1707 | 913..17 | 4485 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| p130CAS-RF | 2629 | CG1212-RF | 1124..2021 | 913..16 | 4490 | 100 | Minus |
| p130CAS-RE | 2585 | CG1212-RE | 1080..1977 | 913..16 | 4490 | 100 | Minus |
| p130CAS-RD | 3292 | CG1212-RD | 1787..2684 | 913..16 | 4490 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 173012..173909 | 913..16 | 4490 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:24:30 has no hits.
BS07383.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:16 Download gff for
BS07383.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1212-PA | 1486..2382 | 17..913 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:00:53 Download gff for
BS07383.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1212-PB | 811..1707 | 17..913 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:24:59 Download gff for
BS07383.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p130CAS-RD | 1787..2696 | 4..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:47:08 Download gff for
BS07383.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p130CAS-RD | 1787..2696 | 4..913 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:47:08 Download gff for
BS07383.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 173012..173921 | 4..913 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:24:59 Download gff for
BS07383.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 173012..173921 | 4..913 | 99 | | Minus |
BS07383.5prime Sequence
959 bp (871 high quality bases) assembled on 2006-01-06
> BS07383.5prime
GAAGTTATCAGTCGACATGATGTCCAGTCCTCGCCAAAACGCAAGTGGCA
GCGAGTTTGAGACCTATGACATACCCAAGCCGGCCACGCCCGTTCCGCTG
AACTACGACAGTCCCAGAAGCGGTCTTCCGAAGGCTTCTAACTCTACAAC
GACCTCCAGCTCCAGCCTAGGCACCCGGTTTGAGACACTCAAGAGCGTGG
CCGCATCCATTGCGGAGGAGTCTTACGATGTGCCACGACCCCTGATCTTA
GGCAGCAACCAGCTCCAGCAGCAAATGTCACAGATGACGCCAAGCAGTTC
CGCCTCCTCACTGCTGACCAGCGACAGCCTCTCCCTGAGCTTTTCCAGCT
CGAACCGTTCATCGCTGGCCAACATGCCGGATTACGACATCCCTCGACGA
AATCCGCTTCCTGTGCGCCGTCAACAAAGTGGGCTGACCTACGACTTTCC
GCTGCCTCCGTTGCAGGAGCAGGTTCCGCGGGTGCTGTGCACACCCTCTA
CCGTCACCACTACCAAAGAACTGCCTCTAGAGCTCTCCTCCGCACTAGAA
ACACTCGCAAAGCTGCAACTGCAGACTACTGCGGCCATTAATCGATTGCT
AAGTTTCGTAGTACCCAATTGGCGCACCCGCGCTCAACTCGAGCCGGCCA
TCATGGATCTGAAGCTGGCCGCCCTGCGTCTGCGCACAACACTCCACGAC
CTGGCAGAGTTCGGGGAGGGAGCCCTGGGAAACGCCACGCGTTCGGAGGA
CCGAAACCTGGCCCTCAAGCTGCGGCCCTTGGTGCGGGCTTTGCGAGATG
CCAACAAGCTGATTCACGACTCTTCCGAATCCCTCGATGCCCAGGGAGCC
TGGTCTATAGATCAGCTGGCCAGAAGCGACGAGAAGCACGGCTGCCGACC
CCCGGACGCACTGGACCAACTGATGGTTTGTGCCCAGACGCTCACTGAGG
ACGTGCGCT
BS07383.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1212-PA | 2382 | p130CAS-RA | 676..1618 | 17..959 | 4715 | 100 | Plus |
| CG1212-PB | 1707 | p130CAS-RB | 1..943 | 17..959 | 4715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| p130CAS-RF | 2629 | CG1212-RF | 314..1256 | 17..959 | 4715 | 100 | Plus |
| p130CAS-RE | 2585 | CG1212-RE | 270..1212 | 17..959 | 4715 | 100 | Plus |
| p130CAS-RD | 3292 | CG1212-RD | 977..1919 | 17..959 | 4715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 172202..173144 | 17..959 | 4715 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 07:09:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1c | 5443 | Rt1c RT1C 5443bp | 1702..1763 | 337..276 | 112 | 64.5 | Minus |
BS07383.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:18 Download gff for
BS07383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1212-PA | 676..1618 | 17..959 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:00:54 Download gff for
BS07383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1212-PB | 1..943 | 17..959 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:22:42 Download gff for
BS07383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p130CAS-RD | 977..1919 | 17..959 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:26:58 Download gff for
BS07383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p130CAS-RD | 977..1919 | 17..959 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:26:58 Download gff for
BS07383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 172202..173144 | 17..959 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:22:42 Download gff for
BS07383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 172202..173144 | 17..959 | 100 | | Plus |
BS07383.complete Sequence
1739 bp (1739 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635836
> BS07383.complete
GAAGTTATCAGTCGACATGATGTCCAGTCCTCGCCAAAACGCAAGTGGCA
GCGAGTTTGAGACCTATGACATACCCAAGCCGGCCACGCCCGTTCCGCTG
AACTACGACAGTCCCAGAAGCGGTCTTCCGAAGGCTTCTAACTCTACAAC
GACCTCCAGCTCCAGCCTAGGCACCCGGTTTGAGACACTCAAGAGCGTGG
CCGCATCCATTGCGGAGGAGTCTTACGATGTGCCACGACCCCTGATCTTA
GGCAGCAACCAGCTCCAGCAGCAAATGTCACAGATGACGCCAAGCAGTTC
CGCCTCCTCACTGCTGACCAGCGACAGCCTCTCCCTGAGCTTTTCCAGCT
CGAACCGTTCATCGCTGGCCAACATGCCGGATTACGACATCCCTCGACGA
AATCCGCTTCCTGTGCGCCGTCAACAAAGTGGGCTGACCTACGACTTTCC
GCTGCCTCCGTTGCAGGAGCAGGTTCCGCGGGTGCTGTGCACACCCTCTA
CCGTCACCACTACCAAAGAACTGCCTCTAGAGCTCTCCTCCGCACTAGAA
ACACTCGCAAAGCTGCAACTGCAGACTACTGCGGCCATTAATCGATTGCT
AAGTTTCGTAGTACCCAATTGGCGCACCCGCGCTCAACTCGAGCCGGCCA
TCATGGATCTGAAGCTGGCCGCCCTGCGTCTGCGCACAACACTCCACGAC
CTGGCAGAGTTCGGGGAGGGAGCCCTGGGAAACGCCACGCGTTCGGAGGA
CCGAAACCTGGCCCTCAAGCTGCGGCCCTTGGTGCGGGCTTTGCGAGATG
CCAACAAGCTGATTCACGACTCTTCCGAATCCCTCGATGCCCAGGGAGCC
TGGTCTATAGATCAGCTGGCCAGAAGCGACGAGAAGCACGGCTGCCGACC
CCCGGACGCACTGGACCAACTGATGGTTTGTGCCCAGACGCTCACTGAGG
ACGTGCGCTCAACCACCAGTTTCATACAGGGCAACGCCTCGCTACTTTTT
AAGCGGCAGCTGACGGTGGGTCACAACGGAGGATCAGGAACGGGAGTGTT
AGAGGGCAGTCGGGGCAGCGCTGAATGGTTGGAGGACTACGACTATGTGG
CCTTTGAGTCCAAGGATGCAGCTGCCAGGAAAAACGAGGCGCTACGTGAG
GCTATTCCCGCCGACCTGAAAACGCAGTTCGATACGGTTATCCGGACTGC
TGAGAGTTCAGCCATGGGCGCTGGGTCTGGATCAATTCCAACCACGCCCA
CGGCACGCACGACACCTACTACGCCCTGCAAGTCGCCAGAGATGACCGAC
AAAGACAAGAAGCTGGTGCGCTACTATGCCCAACAGATCTCTACTCATAT
GGGAAACTTGATGCAGGCCATTGATTCCTTCCTGGAGACAGTAGAAAAGA
ACCAGCCGCCCAAGTTCTTCATTGCATACGGAAAGTTTGTGGTCGTGAGC
GCCCACAACTTGGTGACCATAGGCGACAACGTTTACCGAAATATTTCGAA
GGAGGCACTGCGGGAGAAAATCCTGCGCTGCACCAACGCCCTCTCCGATG
CCCTAAAAACGTGCGTCTTGAAGTCAAAGAAGGCGGCAGCCCACTTCCCC
AGCGGTAGTGCAGTCCAGGAAATGGTCGATTCGGTGGTCCACATCAACAA
CCTAGCCCGGGACCTCAAGTCGGTCATGCTGCAGGCAGTTCATCTGTCAA
CGGCGGCAGGAGTGGGTGCATGAAAGCTTTCTAGACCAT
BS07383.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:07:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| p130CAS-RF | 1707 | CG1212-PF | 1..1707 | 17..1723 | 8535 | 100 | Plus |
| p130CAS-RD | 2496 | CG1212-PD | 790..2496 | 17..1723 | 8535 | 100 | Plus |
| p130CAS-RG | 2382 | CG1212-PG | 676..2382 | 17..1723 | 8535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:07:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| p130CAS-RF | 2629 | CG1212-RF | 314..2021 | 17..1724 | 8540 | 100 | Plus |
| p130CAS-RE | 2585 | CG1212-RE | 270..1977 | 17..1724 | 8540 | 100 | Plus |
| p130CAS-RD | 3292 | CG1212-RD | 977..2684 | 17..1724 | 8540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:07:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 172202..173909 | 17..1724 | 8540 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:07:14 has no hits.
BS07383.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:08 Download gff for
BS07383.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p130CAS-RD | 790..2496 | 17..1723 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:16 Download gff for
BS07383.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p130CAS-RD | 977..2696 | 17..1736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:54 Download gff for
BS07383.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p130CAS-RD | 977..2682 | 17..1722 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:08 Download gff for
BS07383.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p130CAS-RD | 977..2696 | 17..1736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:13 Download gff for
BS07383.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p130CAS-RD | 977..2682 | 17..1722 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:13 Download gff for
BS07383.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 172202..173907 | 17..1722 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:54 Download gff for
BS07383.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 172202..173907 | 17..1722 | 100 | | Plus |
BS07383.pep Sequence
Translation from 16 to 1722
> BS07383.pep
MMSSPRQNASGSEFETYDIPKPATPVPLNYDSPRSGLPKASNSTTTSSSS
LGTRFETLKSVAASIAEESYDVPRPLILGSNQLQQQMSQMTPSSSASSLL
TSDSLSLSFSSSNRSSLANMPDYDIPRRNPLPVRRQQSGLTYDFPLPPLQ
EQVPRVLCTPSTVTTTKELPLELSSALETLAKLQLQTTAAINRLLSFVVP
NWRTRAQLEPAIMDLKLAALRLRTTLHDLAEFGEGALGNATRSEDRNLAL
KLRPLVRALRDANKLIHDSSESLDAQGAWSIDQLARSDEKHGCRPPDALD
QLMVCAQTLTEDVRSTTSFIQGNASLLFKRQLTVGHNGGSGTGVLEGSRG
SAEWLEDYDYVAFESKDAAARKNEALREAIPADLKTQFDTVIRTAESSAM
GAGSGSIPTTPTARTTPTTPCKSPEMTDKDKKLVRYYAQQISTHMGNLMQ
AIDSFLETVEKNQPPKFFIAYGKFVVVSAHNLVTIGDNVYRNISKEALRE
KILRCTNALSDALKTCVLKSKKAAAHFPSGSAVQEMVDSVVHINNLARDL
KSVMLQAVHLSTAAGVGA*
BS07383.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| p130CAS-PF | 568 | CG1212-PF | 1..568 | 1..568 | 2858 | 100 | Plus |
| p130CAS-PD | 831 | CG1212-PD | 264..831 | 1..568 | 2858 | 100 | Plus |
| p130CAS-PG | 793 | CG1212-PG | 226..793 | 1..568 | 2858 | 100 | Plus |
| p130CAS-PB | 568 | CG1212-PB | 1..568 | 1..568 | 2858 | 100 | Plus |
| p130CAS-PE | 567 | CG1212-PE | 1..567 | 2..568 | 2853 | 100 | Plus |
