Clone Sequence Records
BS07387.3prime Sequence
848 bp (811 high quality bases) assembled on 2006-01-09
> BS07387.3prime
ATGGTCTAGAAAGCTTTCACAAGTTTCCTCGCTTGGCTTGTTCAATTTCA
ATGGCCGTGAACAAGGACTTAAAGTTGCCAGCGCCAAATCCATTGTGATT
GTAGCGTTGGATAACTTCCAGGAAGAGGGTCGGTCTATCCTGGCAGTTCT
TTGTGAAGATCTGCAGCAGATATCCGTTCTCGTCGAAGTCAATCAAAATG
TTCAACTTCTTCAAGACCTCCATGTCCTCCTTGATCTTGGTGCGGCTGTG
CGAGAGCTGCTCCTGAAGGATCTCGTAGTACGAGGATGGGATGGTCAGGA
ACTCGGTTCCTCGAGCCTTTAGGTTGCTCACCGCCTCGATAATGTCATCC
GTATTAAGAGCAATGTGCTGGACACCACCGCCGCCGTAGTACTCCACGTA
CTCCTGGATCTGTGACTTCTTTTTCCCATTGGCTGGCTCATTGATCGGCA
TCTTCACCGTCTCCTCGTAGTTTGCCATCACGATGGACCGCAGGGCGGAG
TATTCCGTGTGAATCTGCGAGTCATCCACGGACCAGAAGCGGTGGAACTG
CAGGATTCTCTCGTACCAGGAGGCCACGCTCTCCATCTGCAGATCCGGCT
GGTTGCCCACCACGTGATCAATGAAGTTCAGCTTGGTGGAGGGCAATCCG
TTTAGAAGGACATCTTTGGGCGACCGCTGGAATCCAGGCAGGAAATCTCC
AGCGTACCCATTGCGCTCCACGAAAGTGTGGGTAGTGTCGCCGTACGTCT
TGATGGTAGCGAATCTCACGAATCCCTGATCATCGCTCTCCTCCCAGATG
TCGCGGACCACTTCGGCCCCACGGGACACGGCCAGTGTGAAAATGGCA
BS07387.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11796-PA | 1143 | CG11796-RA | 312..1143 | 848..17 | 4160 | 100 | Minus |
CG11796-PB | 885 | CG11796-RB | 54..885 | 848..17 | 4160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:57:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11796-RB | 1518 | CG11796-RB | 627..1459 | 848..16 | 4165 | 100 | Minus |
CG11796-RA | 1301 | CG11796-RA | 410..1242 | 848..16 | 4165 | 100 | Minus |
CG5872-RB | 1866 | CG5872-RB | 1721..1796 | 16..91 | 380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:57:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20438364..20439019 | 91..746 | 3280 | 100 | Plus |
3L | 28110227 | 3L | 20439077..20439179 | 746..848 | 515 | 100 | Plus |
3L | 28110227 | 3L | 20438225..20438300 | 16..91 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:57:08 has no hits.
BS07387.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:25 Download gff for
BS07387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-PA | 313..1143 | 17..847 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:04 Download gff for
BS07387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-PB | 55..885 | 17..847 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:32:23 Download gff for
BS07387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RA | 411..1242 | 16..847 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:29:06 Download gff for
BS07387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RA | 411..1242 | 16..847 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:29:06 Download gff for
BS07387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20438225..20438300 | 16..91 | 100 | <- | Plus |
3L | 20438365..20439018 | 92..745 | 100 | <- | Plus |
3L | 20439077..20439178 | 746..847 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:32:23 Download gff for
BS07387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20431325..20431400 | 16..91 | 100 | <- | Plus |
arm_3L | 20431465..20432118 | 92..745 | 100 | <- | Plus |
arm_3L | 20432177..20432278 | 746..847 | 100 | | Plus |
BS07387.5prime Sequence
911 bp (798 high quality bases) assembled on 2006-01-06
> BS07387.5prime
GAAGTTATCAGTCGACATGCGCCACGGCGACGGTGTCAAGGATGTAGCCT
TCGAAGTGGAGGATTTGAATGCCATTTTCACACTGGCCGTGTCCCGTGGG
GCCGAAGTGGTCCGCGACATCTGGGAGGAGAGCGATGATCAGGGATTCGT
GAGATTCGCTACCATCAAGACGTACGGCGACACTACCCACACTTTCGTGG
AGCGCAATGGGTACGCTGGAGATTTCCTGCCTGGATTCCAGCGGTCGCCC
AAAGATGTCCTTCTAAACGGATTGCCCTCCACCAAGCTGAACTTCATTGA
TCACGTGGTGGGCAACCAGCCGGATCTGCAGATGGAGAGCGTGGCCTCCT
GGTACGAGAGAATCCTGCAGTTCCACCGCTTCTGGTCCGTGGATGACTCG
CAGATTCACACGGAATACTCCGCCCTGCGGTCCATCGTGATGGCAAACTA
CGAGGAGACGGTGAAGATGCCGATCAATGAGCCAGCCAATGGGAAAAAGA
AGTCACAGATCCAGGAGTACGTGGAGTACTACGGCGGCGGTGGTGTCCAG
CACATTGCTCTTAATACGGATGACATTATCGAGGCGGTGAGCAACCTAAA
GGCTCGAGGAACCGAGTTCCTGACCATCCCATCCTCGTACTACGAGATCC
TTCAGGAGCAGCTCTCGCACAGCCGCACCAAGATCAAGGAGGACATGGAG
GTCTTGAAGAAGTTGAACATTTTGATTGACTTCGACGAGAACGGATATCT
GCTGCAGATCTTCACAAAGAACTGCCAGGATAGACCGACCCTCTTCCTGG
AAGTATCCAACGCTACAATCACAATGGATTTGGCGCTGGCAACTTTAAGT
CCTTTGTCACGGCCATTGAAATTGACAGCCNAGCGAGGAAACTTGTGAAA
GCTTCTAGACC
BS07387.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11796-PA | 1143 | CG11796-RA | 259..1046 | 17..804 | 3940 | 100 | Plus |
CG11796-PB | 885 | CG11796-RB | 1..788 | 17..804 | 3940 | 100 | Plus |
CG11796-PA | 1143 | CG11796-RA | 1047..1118 | 804..875 | 310 | 97.2 | Plus |
CG11796-PB | 885 | CG11796-RB | 789..860 | 804..875 | 310 | 97.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:23:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11796-RB | 1518 | CG11796-RB | 574..1459 | 17..899 | 4314 | 99.3 | Plus |
CG11796-RA | 1301 | CG11796-RA | 357..1242 | 17..899 | 4314 | 99.3 | Plus |
CG5872-RB | 1866 | CG5872-RB | 1721..1796 | 899..826 | 289 | 93.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:23:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20438364..20439019 | 826..172 | 3230 | 99.8 | Minus |
3L | 28110227 | 3L | 20439077..20439232 | 172..17 | 780 | 100 | Minus |
3L | 28110227 | 3L | 20438225..20438300 | 899..826 | 259 | 92.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:23:46 has no hits.
BS07387.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:26 Download gff for
BS07387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-PA | 259..1143 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:05 Download gff for
BS07387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-PB | 1..885 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:59:52 Download gff for
BS07387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RA | 357..1242 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:16:26 Download gff for
BS07387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RA | 357..1242 | 17..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:16:26 Download gff for
BS07387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20438225..20438300 | 826..899 | 93 | <- | Minus |
3L | 20438365..20439018 | 173..825 | 99 | <- | Minus |
3L | 20439077..20439232 | 17..172 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:59:52 Download gff for
BS07387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20431325..20431400 | 826..899 | 93 | <- | Minus |
arm_3L | 20431465..20432118 | 173..825 | 99 | <- | Minus |
arm_3L | 20432177..20432332 | 17..172 | 100 | | Minus |
BS07387.complete Sequence
917 bp (917 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635837
> BS07387.complete
GAAGTTATCAGTCGACATGCGCCACGGCGACGGTGTCAAGGATGTAGCCT
TCGAAGTGGAGGATTTGAATGCCATTTTCACACTGGCCGTGTCCCGTGGG
GCCGAAGTGGTCCGCGACATCTGGGAGGAGAGCGATGATCAGGGATTCGT
GAGATTCGCTACCATCAAGACGTACGGCGACACTACCCACACTTTCGTGG
AGCGCAATGGGTACGCTGGAGATTTCCTGCCTGGATTCCAGCGGTCGCCC
AAAGATGTCCTTCTAAACGGATTGCCCTCCACCAAGCTGAACTTCATTGA
TCACGTGGTGGGCAACCAGCCGGATCTGCAGATGGAGAGCGTGGCCTCCT
GGTACGAGAGAATCCTGCAGTTCCACCGCTTCTGGTCCGTGGATGACTCG
CAGATTCACACGGAATACTCCGCCCTGCGGTCCATCGTGATGGCAAACTA
CGAGGAGACGGTGAAGATGCCGATCAATGAGCCAGCCAATGGGAAAAAGA
AGTCACAGATCCAGGAGTACGTGGAGTACTACGGCGGCGGTGGTGTCCAG
CACATTGCTCTTAATACGGATGACATTATCGAGGCGGTGAGCAACCTAAA
GGCTCGAGGAACCGAGTTCCTGACCATCCCATCCTCGTACTACGAGATCC
TTCAGGAGCAGCTCTCGCACAGCCGCACCAAGATCAAGGAGGACATGGAG
GTCTTGAAGAAGTTGAACATTTTGATTGACTTCGACGAGAACGGATATCT
GCTGCAGATCTTCACAAAGAACTGCCAGGATAGACCGACCCTCTTCCTGG
AAGTTATCCAACGCTACAATCACAATGGATTTGGCGCTGGCAACTTTAAG
TCCTTGTTCACGGCCATTGAAATTGAACAAGCCAAGCGAGGAAACTTGTG
AAAGCTTTCTAGACCAT
BS07387.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:47:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11796-RB | 885 | CG11796-PB | 1..885 | 17..901 | 4425 | 100 | Plus |
CG11796-RA | 1143 | CG11796-PA | 259..1143 | 17..901 | 4425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:47:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11796-RB | 1518 | CG11796-RB | 574..1459 | 17..902 | 4430 | 100 | Plus |
CG11796-RA | 1301 | CG11796-RA | 357..1242 | 17..902 | 4430 | 100 | Plus |
CG5872-RB | 1866 | CG5872-RB | 1721..1796 | 902..827 | 380 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:47:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20438364..20439019 | 827..172 | 3280 | 100 | Minus |
3L | 28110227 | 3L | 20439077..20439232 | 172..17 | 780 | 100 | Minus |
3L | 28110227 | 3L | 20438225..20438300 | 902..827 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:47:01 has no hits.
BS07387.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:58 Download gff for
BS07387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RB | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:13 Download gff for
BS07387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RB | 568..1453 | 17..902 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:36:09 Download gff for
BS07387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RA | 357..1240 | 17..900 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:30 Download gff for
BS07387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11796-RA | 357..1240 | 17..900 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:30 Download gff for
BS07387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20438227..20438300 | 827..900 | 100 | <- | Minus |
3L | 20438365..20439018 | 173..826 | 100 | <- | Minus |
3L | 20439077..20439232 | 17..172 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:36:09 Download gff for
BS07387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20431327..20431400 | 827..900 | 100 | <- | Minus |
arm_3L | 20431465..20432118 | 173..826 | 100 | <- | Minus |
arm_3L | 20432177..20432332 | 17..172 | 100 | | Minus |
BS07387.pep Sequence
Translation from 16 to 900
> BS07387.pep
MRHGDGVKDVAFEVEDLNAIFTLAVSRGAEVVRDIWEESDDQGFVRFATI
KTYGDTTHTFVERNGYAGDFLPGFQRSPKDVLLNGLPSTKLNFIDHVVGN
QPDLQMESVASWYERILQFHRFWSVDDSQIHTEYSALRSIVMANYEETVK
MPINEPANGKKKSQIQEYVEYYGGGGVQHIALNTDDIIEAVSNLKARGTE
FLTIPSSYYEILQEQLSHSRTKIKEDMEVLKKLNILIDFDENGYLLQIFT
KNCQDRPTLFLEVIQRYNHNGFGAGNFKSLFTAIEIEQAKRGNL*
BS07387.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:51:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11796-PB | 294 | CG11796-PB | 1..294 | 1..294 | 1532 | 100 | Plus |
CG11796-PA | 380 | CG11796-PA | 87..380 | 1..294 | 1532 | 100 | Plus |