Clone BS07387 Report

Search the DGRC for BS07387

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:73
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG11796-RB
Protein status:BS07387.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07387.3prime Sequence

848 bp (811 high quality bases) assembled on 2006-01-09

> BS07387.3prime
ATGGTCTAGAAAGCTTTCACAAGTTTCCTCGCTTGGCTTGTTCAATTTCA
ATGGCCGTGAACAAGGACTTAAAGTTGCCAGCGCCAAATCCATTGTGATT
GTAGCGTTGGATAACTTCCAGGAAGAGGGTCGGTCTATCCTGGCAGTTCT
TTGTGAAGATCTGCAGCAGATATCCGTTCTCGTCGAAGTCAATCAAAATG
TTCAACTTCTTCAAGACCTCCATGTCCTCCTTGATCTTGGTGCGGCTGTG
CGAGAGCTGCTCCTGAAGGATCTCGTAGTACGAGGATGGGATGGTCAGGA
ACTCGGTTCCTCGAGCCTTTAGGTTGCTCACCGCCTCGATAATGTCATCC
GTATTAAGAGCAATGTGCTGGACACCACCGCCGCCGTAGTACTCCACGTA
CTCCTGGATCTGTGACTTCTTTTTCCCATTGGCTGGCTCATTGATCGGCA
TCTTCACCGTCTCCTCGTAGTTTGCCATCACGATGGACCGCAGGGCGGAG
TATTCCGTGTGAATCTGCGAGTCATCCACGGACCAGAAGCGGTGGAACTG
CAGGATTCTCTCGTACCAGGAGGCCACGCTCTCCATCTGCAGATCCGGCT
GGTTGCCCACCACGTGATCAATGAAGTTCAGCTTGGTGGAGGGCAATCCG
TTTAGAAGGACATCTTTGGGCGACCGCTGGAATCCAGGCAGGAAATCTCC
AGCGTACCCATTGCGCTCCACGAAAGTGTGGGTAGTGTCGCCGTACGTCT
TGATGGTAGCGAATCTCACGAATCCCTGATCATCGCTCTCCTCCCAGATG
TCGCGGACCACTTCGGCCCCACGGGACACGGCCAGTGTGAAAATGGCA

BS07387.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG11796-PA 1143 CG11796-RA 312..1143 848..17 4160 100 Minus
CG11796-PB 885 CG11796-RB 54..885 848..17 4160 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG11796-RB 1518 CG11796-RB 627..1459 848..16 4165 100 Minus
CG11796-RA 1301 CG11796-RA 410..1242 848..16 4165 100 Minus
CG5872-RB 1866 CG5872-RB 1721..1796 16..91 380 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20438364..20439019 91..746 3280 100 Plus
3L 28110227 3L 20439077..20439179 746..848 515 100 Plus
3L 28110227 3L 20438225..20438300 16..91 380 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:57:08 has no hits.

BS07387.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:25 Download gff for BS07387.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11796-PA 313..1143 17..847 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:04 Download gff for BS07387.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11796-PB 55..885 17..847 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:32:23 Download gff for BS07387.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 411..1242 16..847 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:29:06 Download gff for BS07387.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 411..1242 16..847 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:29:06 Download gff for BS07387.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20438225..20438300 16..91 100 <- Plus
3L 20438365..20439018 92..745 100 <- Plus
3L 20439077..20439178 746..847 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:32:23 Download gff for BS07387.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20431325..20431400 16..91 100 <- Plus
arm_3L 20431465..20432118 92..745 100 <- Plus
arm_3L 20432177..20432278 746..847 100   Plus

BS07387.5prime Sequence

911 bp (798 high quality bases) assembled on 2006-01-06

> BS07387.5prime
GAAGTTATCAGTCGACATGCGCCACGGCGACGGTGTCAAGGATGTAGCCT
TCGAAGTGGAGGATTTGAATGCCATTTTCACACTGGCCGTGTCCCGTGGG
GCCGAAGTGGTCCGCGACATCTGGGAGGAGAGCGATGATCAGGGATTCGT
GAGATTCGCTACCATCAAGACGTACGGCGACACTACCCACACTTTCGTGG
AGCGCAATGGGTACGCTGGAGATTTCCTGCCTGGATTCCAGCGGTCGCCC
AAAGATGTCCTTCTAAACGGATTGCCCTCCACCAAGCTGAACTTCATTGA
TCACGTGGTGGGCAACCAGCCGGATCTGCAGATGGAGAGCGTGGCCTCCT
GGTACGAGAGAATCCTGCAGTTCCACCGCTTCTGGTCCGTGGATGACTCG
CAGATTCACACGGAATACTCCGCCCTGCGGTCCATCGTGATGGCAAACTA
CGAGGAGACGGTGAAGATGCCGATCAATGAGCCAGCCAATGGGAAAAAGA
AGTCACAGATCCAGGAGTACGTGGAGTACTACGGCGGCGGTGGTGTCCAG
CACATTGCTCTTAATACGGATGACATTATCGAGGCGGTGAGCAACCTAAA
GGCTCGAGGAACCGAGTTCCTGACCATCCCATCCTCGTACTACGAGATCC
TTCAGGAGCAGCTCTCGCACAGCCGCACCAAGATCAAGGAGGACATGGAG
GTCTTGAAGAAGTTGAACATTTTGATTGACTTCGACGAGAACGGATATCT
GCTGCAGATCTTCACAAAGAACTGCCAGGATAGACCGACCCTCTTCCTGG
AAGTATCCAACGCTACAATCACAATGGATTTGGCGCTGGCAACTTTAAGT
CCTTTGTCACGGCCATTGAAATTGACAGCCNAGCGAGGAAACTTGTGAAA
GCTTCTAGACC

BS07387.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG11796-PA 1143 CG11796-RA 259..1046 17..804 3940 100 Plus
CG11796-PB 885 CG11796-RB 1..788 17..804 3940 100 Plus
CG11796-PA 1143 CG11796-RA 1047..1118 804..875 310 97.2 Plus
CG11796-PB 885 CG11796-RB 789..860 804..875 310 97.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:23:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG11796-RB 1518 CG11796-RB 574..1459 17..899 4314 99.3 Plus
CG11796-RA 1301 CG11796-RA 357..1242 17..899 4314 99.3 Plus
CG5872-RB 1866 CG5872-RB 1721..1796 899..826 289 93.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:23:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20438364..20439019 826..172 3230 99.8 Minus
3L 28110227 3L 20439077..20439232 172..17 780 100 Minus
3L 28110227 3L 20438225..20438300 899..826 259 92.1 Minus
Blast to na_te.dros performed on 2015-02-12 12:23:46 has no hits.

BS07387.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:26 Download gff for BS07387.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11796-PA 259..1143 17..898 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:05 Download gff for BS07387.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11796-PB 1..885 17..898 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:59:52 Download gff for BS07387.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 357..1242 17..899 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:16:26 Download gff for BS07387.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 357..1242 17..899 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:16:26 Download gff for BS07387.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20438225..20438300 826..899 93 <- Minus
3L 20438365..20439018 173..825 99 <- Minus
3L 20439077..20439232 17..172 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:59:52 Download gff for BS07387.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20431325..20431400 826..899 93 <- Minus
arm_3L 20431465..20432118 173..825 99 <- Minus
arm_3L 20432177..20432332 17..172 100   Minus

BS07387.complete Sequence

917 bp (917 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635837

> BS07387.complete
GAAGTTATCAGTCGACATGCGCCACGGCGACGGTGTCAAGGATGTAGCCT
TCGAAGTGGAGGATTTGAATGCCATTTTCACACTGGCCGTGTCCCGTGGG
GCCGAAGTGGTCCGCGACATCTGGGAGGAGAGCGATGATCAGGGATTCGT
GAGATTCGCTACCATCAAGACGTACGGCGACACTACCCACACTTTCGTGG
AGCGCAATGGGTACGCTGGAGATTTCCTGCCTGGATTCCAGCGGTCGCCC
AAAGATGTCCTTCTAAACGGATTGCCCTCCACCAAGCTGAACTTCATTGA
TCACGTGGTGGGCAACCAGCCGGATCTGCAGATGGAGAGCGTGGCCTCCT
GGTACGAGAGAATCCTGCAGTTCCACCGCTTCTGGTCCGTGGATGACTCG
CAGATTCACACGGAATACTCCGCCCTGCGGTCCATCGTGATGGCAAACTA
CGAGGAGACGGTGAAGATGCCGATCAATGAGCCAGCCAATGGGAAAAAGA
AGTCACAGATCCAGGAGTACGTGGAGTACTACGGCGGCGGTGGTGTCCAG
CACATTGCTCTTAATACGGATGACATTATCGAGGCGGTGAGCAACCTAAA
GGCTCGAGGAACCGAGTTCCTGACCATCCCATCCTCGTACTACGAGATCC
TTCAGGAGCAGCTCTCGCACAGCCGCACCAAGATCAAGGAGGACATGGAG
GTCTTGAAGAAGTTGAACATTTTGATTGACTTCGACGAGAACGGATATCT
GCTGCAGATCTTCACAAAGAACTGCCAGGATAGACCGACCCTCTTCCTGG
AAGTTATCCAACGCTACAATCACAATGGATTTGGCGCTGGCAACTTTAAG
TCCTTGTTCACGGCCATTGAAATTGAACAAGCCAAGCGAGGAAACTTGTG
AAAGCTTTCTAGACCAT

BS07387.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG11796-RB 885 CG11796-PB 1..885 17..901 4425 100 Plus
CG11796-RA 1143 CG11796-PA 259..1143 17..901 4425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG11796-RB 1518 CG11796-RB 574..1459 17..902 4430 100 Plus
CG11796-RA 1301 CG11796-RA 357..1242 17..902 4430 100 Plus
CG5872-RB 1866 CG5872-RB 1721..1796 902..827 380 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20438364..20439019 827..172 3280 100 Minus
3L 28110227 3L 20439077..20439232 172..17 780 100 Minus
3L 28110227 3L 20438225..20438300 902..827 380 100 Minus
Blast to na_te.dros performed on 2014-11-27 12:47:01 has no hits.

BS07387.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:58 Download gff for BS07387.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RB 1..885 17..901 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:13 Download gff for BS07387.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RB 568..1453 17..902 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:36:09 Download gff for BS07387.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 357..1240 17..900 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:30 Download gff for BS07387.complete
Subject Subject Range Query Range Percent Splice Strand
CG11796-RA 357..1240 17..900 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:30 Download gff for BS07387.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20438227..20438300 827..900 100 <- Minus
3L 20438365..20439018 173..826 100 <- Minus
3L 20439077..20439232 17..172 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:36:09 Download gff for BS07387.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20431327..20431400 827..900 100 <- Minus
arm_3L 20431465..20432118 173..826 100 <- Minus
arm_3L 20432177..20432332 17..172 100   Minus

BS07387.pep Sequence

Translation from 16 to 900

> BS07387.pep
MRHGDGVKDVAFEVEDLNAIFTLAVSRGAEVVRDIWEESDDQGFVRFATI
KTYGDTTHTFVERNGYAGDFLPGFQRSPKDVLLNGLPSTKLNFIDHVVGN
QPDLQMESVASWYERILQFHRFWSVDDSQIHTEYSALRSIVMANYEETVK
MPINEPANGKKKSQIQEYVEYYGGGGVQHIALNTDDIIEAVSNLKARGTE
FLTIPSSYYEILQEQLSHSRTKIKEDMEVLKKLNILIDFDENGYLLQIFT
KNCQDRPTLFLEVIQRYNHNGFGAGNFKSLFTAIEIEQAKRGNL*

BS07387.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11796-PB 294 CG11796-PB 1..294 1..294 1532 100 Plus
CG11796-PA 380 CG11796-PA 87..380 1..294 1532 100 Plus