Clone BS07389 Report

Search the DGRC for BS07389

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:73
Well:89
Vector:pDNR-Dual
Associated Gene/Transcriptund-RA
Protein status:BS07389.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07389.3prime Sequence

958 bp (759 high quality bases) assembled on 2006-01-06

> BS07389.3prime
ATGGTCTAGAAAGCTTCTAGTAGTCGTCGCCACGGGAAACGACTTCTTTG
CAGGTGGGTCGCAGCATAATTGTGTGTTCGTACTGAGCCGTGTAGCAGCC
CTTAATGTCGCACAACGGCGGATAAGCCTCCACAATGCCCTTGTCGCACA
GATCCTTGAGAGCCATCTGGTACTTCGTGGCACCGGCGCGGTCCAGCCAA
CGCTTGCAGAAGGCCAGGGTGCCGAAGTTTTTGTTGATGGTGCCAAGCAG
CTGCTTGGATGACTGCAGGCGCAGCGGCACAAACGGCAGATCAAAGTTCT
TCATGTAATGCGAGCAGTCCATATCGTCATGGACCAGACCGCGACCCGTC
GAGCCGAACGTCTCAATGGCGTAGAATTCATCCTCCTCCATGCGAGTGGA
CTCTCCGCCTTTCACAATGGGCACCGTTTTTCCAGCATGAATGCGGTACG
GGCTGATGGAGTGTCCATTTAAGTTGCGAATCGCCTTGATGGGATATGTT
TTGCCGTCCAACTCGATCTCGTACGACTCCATGACCTCCTGGATAGCGGC
GCCGATGTCGCATAGGCGCACATCGATGCCCGCCTCTCTGATGCCCGTGT
TGGTGGCCTCCTTGACGGCCTGCAGCAACTTGTCGTACTTGTTGTTGAAG
GTCAGGGTGAAGGCGCAATCAATGATCCGCCCCTTGATATGGGTACCAAA
ATCAATCTTGCACACATCGTCGTACTGCAGTACAGTGGGGTCTCCGGCAT
TGGGCGTGTAGTGGGCGGCGCAATGGTTAAGAGAGCAACCAGTCGGGAAG
GCCAAACCAGCCTCCAGACCATTTTCGCCGATCAGGCGCCGAGCAGTGTT
CTCCAGCTCCTCGCAGATTTGGATCATGGTCATGCCCGGGCTTAATGTAG
CGCTGCATATACTGACGCGTCTGACGATGGGCCTCAGCCGCCTGGCGCAA
TTTCTGGT

BS07389.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG4008-PA 1347 und-RA 475..1347 889..17 4365 100 Minus
CG4008-PA 1347 und-RA 407..476 958..889 325 98.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
und-RC 1628 CG4008-RC 547..1487 958..17 4670 99.8 Minus
und-RB 1582 CG4008-RB 501..1441 958..17 4670 99.8 Minus
und-RA 1748 CG4008-RA 667..1607 958..17 4670 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:09:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9764136..9764649 958..444 2510 99.6 Minus
2L 23513712 2L 9764770..9765197 444..17 2140 100 Minus
Blast to na_te.dros performed on 2015-02-02 19:09:30 has no hits.

BS07389.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:27 Download gff for BS07389.3prime
Subject Subject Range Query Range Percent Splice Strand
und-PA 407..1347 17..958 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:07 Download gff for BS07389.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4008-PA 407..1347 17..958 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:00:48 Download gff for BS07389.3prime
Subject Subject Range Query Range Percent Splice Strand
und-RA 691..1631 17..958 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:06:42 Download gff for BS07389.3prime
Subject Subject Range Query Range Percent Splice Strand
und-RA 667..1607 17..958 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:06:42 Download gff for BS07389.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9764136..9764648 445..958 99 -> Minus
2L 9764770..9765197 17..444 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:00:48 Download gff for BS07389.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9764136..9764648 445..958 99 -> Minus
arm_2L 9764770..9765197 17..444 100   Minus

BS07389.5prime Sequence

906 bp (833 high quality bases) assembled on 2006-01-06

> BS07389.5prime
GAAGTTATCAGTCGACATGTCTGCAACCGAGACTCTGAATGTGGAGGCGG
CAACGCCCGAGATCGGCGAGGAGGTCAAGAAACAAAAGAAGCCCAAGCCG
AACAACAAGAAGCTCCGCCAAGAAGCGGCAGCCAAAATAGCCTCCGGAGA
AGGCGGCGACGAGGAGCTGACCACAAACGGAGATGCCAAACCGGCAACAC
CGGCCGCTCAGCCGGCAAAGAAGAAGGGGAACAAGGGCAAGAAAAGCGGT
CAGACTGATCCGCCCACCATACCCATTGCTAAGCTTTATCCGGACGGCAA
CTTCCCCGAGGGCGAGATCGTGGAGCACCCCACGCCCAAGGATATGCCCG
ACGATCGTACGGCCAAGGACCGATTCACATCGGAGGAGAAGCGTGCTCTG
GACCGTATCAACACGGACATCTACCAGGAATTGCGCCAGGCGGCTGAGGC
CCATCGTCAGACGCGTCAGTATATGCAGCGCTACATTAAGCCGGGCATGA
CCATGATCCAAATCTGCGAGGAGCTGGAGAACACTGCTCGGCGCCTGATC
GGCGAAAATGGTCTGGAGGCTGGTTTGGCCTTCCCGACTGGTTGCTCTCT
TAACCATTGCGCCGCCCACTACACGCCCAATGCCGGAGACCCCACTGTAC
TGCAGTACGACGATGTGTGCAAGATTGATTTTGGTACCCATATCAAGGGG
CGGATCATTGATTGCGCCTTCACCCTGACCTTCAACAACAAGTACGACAA
GTTGCTGCAGGCCGTCAAGGAGGCCACCAACACGGGCATCAGAGAGGCGG
GCATCGATGTGCGCCTATGCGACATCGGCGCCGCTATCCAGGAGGTCATG
GAGTCGTACGAGATCGAGTTGGACGGCAAAACATATCCCATCAAGGCGAT
TCGCAA

BS07389.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4008-PA 1347 und-RA 1..890 17..906 4450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
und-RC 1628 CG4008-RC 137..1030 13..906 4455 99.9 Plus
und-RB 1582 CG4008-RB 91..984 13..906 4455 99.9 Plus
und-RA 1748 CG4008-RA 257..1150 13..906 4455 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9763834..9764619 121..906 3930 100 Plus
2L 23513712 2L 9763625..9763734 13..122 535 99.1 Plus
Blast to na_te.dros performed on 2015-02-12 06:59:04 has no hits.

BS07389.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:28 Download gff for BS07389.5prime
Subject Subject Range Query Range Percent Splice Strand
und-PA 1..888 17..904 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:09 Download gff for BS07389.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4008-PA 1..888 17..904 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:21:36 Download gff for BS07389.5prime
Subject Subject Range Query Range Percent Splice Strand
und-RA 281..1172 13..904 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:32:06 Download gff for BS07389.5prime
Subject Subject Range Query Range Percent Splice Strand
und-RA 257..1148 13..904 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:32:06 Download gff for BS07389.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9763625..9763734 14..122 98 -> Plus
2L 9763836..9764617 123..904 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:21:36 Download gff for BS07389.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9763625..9763734 14..122 98 -> Plus
arm_2L 9763836..9764617 123..904 100   Plus

BS07389.complete Sequence

1379 bp (1379 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635838

> BS07389.complete
GAAGTTATCAGTCGACATGTCTGCAACCGAGACTCTGAATGTGGAGGCGG
CAACGCCCGAGATCGGCGAGGAGGTCAAGAAACAAAAGAAGCCCAAGCCG
AACAACAAGAAGCTCCGCCAAGAAGCGGCAGCCAAAATAGCCTCCGGAGA
AGGCGGCGACGAGGAGCTGACCACAAACGGAGATGCCAAACCGGCAACAC
CGGCCGCTCAGCCGGCAAAGAAGAAGGGGAACAAGGGCAAGAAAAGCGGT
CAGACTGATCCGCCCACCATACCCATTGCTAAGCTTTATCCGGACGGCAA
CTTCCCCGAGGGCGAGATCGTGGAGCACCCCACGCCCAAGGATATGCCCG
ACGATCGTACGGCCAAGGACCGATTCACATCGGAGGAGAAGCGTGCTCTG
GACCGTATCAACACGGACATCTACCAGGAATTGCGCCAGGCGGCTGAGGC
CCATCGTCAGACGCGTCAGTATATGCAGCGCTACATTAAGCCGGGCATGA
CCATGATCCAAATCTGCGAGGAGCTGGAGAACACTGCTCGGCGCCTGATC
GGCGAAAATGGTCTGGAGGCTGGTTTGGCCTTCCCGACTGGTTGCTCTCT
TAACCATTGCGCCGCCCACTACACGCCCAATGCCGGAGACCCCACTGTAC
TGCAGTACGACGATGTGTGCAAGATTGATTTTGGTACCCATATCAAGGGG
CGGATCATTGATTGCGCCTTCACCCTGACCTTCAACAACAAGTACGACAA
GTTGCTGCAGGCCGTCAAGGAGGCCACCAACACGGGCATCAGAGAGGCGG
GCATCGATGTGCGCCTATGCGACATCGGCGCCGCTATCCAGGAGGTCATG
GAGTCGTACGAGATCGAGTTGGACGGCAAAACATATCCCATCAAGGCGAT
TCGCAACTTAAATGGACACTCCATCAGCCCGTACCGCATTCATGCTGGAA
AAACGGTGCCCATTGTGAAAGGCGGAGAGTCCACTCGCATGGAGGAGGAT
GAATTCTACGCCATTGAGACGTTCGGCTCGACGGGTCGCGGTCTGGTCCA
TGACGATATGGACTGCTCGCATTACATGAAGAACTTTGATCTGCCGTTTG
TGCCGCTGCGCCTGCAGTCATCCAAGCAGCTGCTTGGCACCATCAACAAA
AACTTCGGCACCCTGGCCTTCTGCAAGCGTTGGCTGGACCGCGCCGGTGC
CACGAAGTACCAGATGGCTCTCAAGGATCTGTGCGACAAGGGCATTGTGG
AGGCTTATCCGCCGTTGTGCGACATTAAGGGCTGCTACACGGCTCAGTAC
GAACACACAATTATGCTGCGACCCACCTGCAAAGAAGTCGTTTCCCGTGG
CGACGACTACTAGAAGCTTTCTAGACCAT

BS07389.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
und-RC 1347 CG4008-PC 1..1347 17..1363 6735 100 Plus
und-RB 1347 CG4008-PB 1..1347 17..1363 6735 100 Plus
und-RA 1347 CG4008-PA 1..1347 17..1363 6735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
und-RC 1628 CG4008-RC 137..1487 13..1363 6740 99.9 Plus
und-RB 1582 CG4008-RB 91..1441 13..1363 6740 99.9 Plus
und-RA 1748 CG4008-RA 257..1607 13..1363 6740 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9763834..9764649 121..936 4080 100 Plus
2L 23513712 2L 9764770..9765197 936..1363 2140 100 Plus
2L 23513712 2L 9763625..9763734 13..122 535 99.1 Plus
Blast to na_te.dros performed on 2014-11-27 01:21:57 has no hits.

BS07389.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:09 Download gff for BS07389.complete
Subject Subject Range Query Range Percent Splice Strand
und-RA 1..1347 17..1363 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:17 Download gff for BS07389.complete
Subject Subject Range Query Range Percent Splice Strand
und-RA 281..1631 13..1363 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:05 Download gff for BS07389.complete
Subject Subject Range Query Range Percent Splice Strand
und-RA 285..1631 17..1363 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:09 Download gff for BS07389.complete
Subject Subject Range Query Range Percent Splice Strand
und-RA 281..1631 13..1363 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:57 Download gff for BS07389.complete
Subject Subject Range Query Range Percent Splice Strand
und-RA 261..1607 17..1363 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:57 Download gff for BS07389.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9763629..9763734 17..122 100 -> Plus
2L 9763836..9764648 123..935 100 -> Plus
2L 9764770..9765197 936..1363 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:05 Download gff for BS07389.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9763629..9763734 17..122 100 -> Plus
arm_2L 9763836..9764648 123..935 100 -> Plus
arm_2L 9764770..9765197 936..1363 100   Plus

BS07389.pep Sequence

Translation from 16 to 1362

> BS07389.pep
MSATETLNVEAATPEIGEEVKKQKKPKPNNKKLRQEAAAKIASGEGGDEE
LTTNGDAKPATPAAQPAKKKGNKGKKSGQTDPPTIPIAKLYPDGNFPEGE
IVEHPTPKDMPDDRTAKDRFTSEEKRALDRINTDIYQELRQAAEAHRQTR
QYMQRYIKPGMTMIQICEELENTARRLIGENGLEAGLAFPTGCSLNHCAA
HYTPNAGDPTVLQYDDVCKIDFGTHIKGRIIDCAFTLTFNNKYDKLLQAV
KEATNTGIREAGIDVRLCDIGAAIQEVMESYEIELDGKTYPIKAIRNLNG
HSISPYRIHAGKTVPIVKGGESTRMEEDEFYAIETFGSTGRGLVHDDMDC
SHYMKNFDLPFVPLRLQSSKQLLGTINKNFGTLAFCKRWLDRAGATKYQM
ALKDLCDKGIVEAYPPLCDIKGCYTAQYEHTIMLRPTCKEVVSRGDDY*

BS07389.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:42
Subject Length Description Subject Range Query Range Score Percent Strand
und-PC 448 CG4008-PC 1..448 1..448 2378 100 Plus
und-PB 448 CG4008-PB 1..448 1..448 2378 100 Plus
und-PA 448 CG4008-PA 1..448 1..448 2378 100 Plus
CG10576-PD 391 CG10576-PD 58..333 171..443 233 26.9 Plus
CG10576-PC 391 CG10576-PC 58..333 171..443 233 26.9 Plus