Clone Sequence Records
BS07389.3prime Sequence
958 bp (759 high quality bases) assembled on 2006-01-06
> BS07389.3prime
ATGGTCTAGAAAGCTTCTAGTAGTCGTCGCCACGGGAAACGACTTCTTTG
CAGGTGGGTCGCAGCATAATTGTGTGTTCGTACTGAGCCGTGTAGCAGCC
CTTAATGTCGCACAACGGCGGATAAGCCTCCACAATGCCCTTGTCGCACA
GATCCTTGAGAGCCATCTGGTACTTCGTGGCACCGGCGCGGTCCAGCCAA
CGCTTGCAGAAGGCCAGGGTGCCGAAGTTTTTGTTGATGGTGCCAAGCAG
CTGCTTGGATGACTGCAGGCGCAGCGGCACAAACGGCAGATCAAAGTTCT
TCATGTAATGCGAGCAGTCCATATCGTCATGGACCAGACCGCGACCCGTC
GAGCCGAACGTCTCAATGGCGTAGAATTCATCCTCCTCCATGCGAGTGGA
CTCTCCGCCTTTCACAATGGGCACCGTTTTTCCAGCATGAATGCGGTACG
GGCTGATGGAGTGTCCATTTAAGTTGCGAATCGCCTTGATGGGATATGTT
TTGCCGTCCAACTCGATCTCGTACGACTCCATGACCTCCTGGATAGCGGC
GCCGATGTCGCATAGGCGCACATCGATGCCCGCCTCTCTGATGCCCGTGT
TGGTGGCCTCCTTGACGGCCTGCAGCAACTTGTCGTACTTGTTGTTGAAG
GTCAGGGTGAAGGCGCAATCAATGATCCGCCCCTTGATATGGGTACCAAA
ATCAATCTTGCACACATCGTCGTACTGCAGTACAGTGGGGTCTCCGGCAT
TGGGCGTGTAGTGGGCGGCGCAATGGTTAAGAGAGCAACCAGTCGGGAAG
GCCAAACCAGCCTCCAGACCATTTTCGCCGATCAGGCGCCGAGCAGTGTT
CTCCAGCTCCTCGCAGATTTGGATCATGGTCATGCCCGGGCTTAATGTAG
CGCTGCATATACTGACGCGTCTGACGATGGGCCTCAGCCGCCTGGCGCAA
TTTCTGGT
BS07389.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4008-PA | 1347 | und-RA | 475..1347 | 889..17 | 4365 | 100 | Minus |
CG4008-PA | 1347 | und-RA | 407..476 | 958..889 | 325 | 98.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:09:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
und-RC | 1628 | CG4008-RC | 547..1487 | 958..17 | 4670 | 99.8 | Minus |
und-RB | 1582 | CG4008-RB | 501..1441 | 958..17 | 4670 | 99.8 | Minus |
und-RA | 1748 | CG4008-RA | 667..1607 | 958..17 | 4670 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:09:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9764136..9764649 | 958..444 | 2510 | 99.6 | Minus |
2L | 23513712 | 2L | 9764770..9765197 | 444..17 | 2140 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 19:09:30 has no hits.
BS07389.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:27 Download gff for
BS07389.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
und-PA | 407..1347 | 17..958 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:07 Download gff for
BS07389.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4008-PA | 407..1347 | 17..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:00:48 Download gff for
BS07389.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
und-RA | 691..1631 | 17..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:06:42 Download gff for
BS07389.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
und-RA | 667..1607 | 17..958 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:06:42 Download gff for
BS07389.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9764136..9764648 | 445..958 | 99 | -> | Minus |
2L | 9764770..9765197 | 17..444 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:00:48 Download gff for
BS07389.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9764136..9764648 | 445..958 | 99 | -> | Minus |
arm_2L | 9764770..9765197 | 17..444 | 100 | | Minus |
BS07389.5prime Sequence
906 bp (833 high quality bases) assembled on 2006-01-06
> BS07389.5prime
GAAGTTATCAGTCGACATGTCTGCAACCGAGACTCTGAATGTGGAGGCGG
CAACGCCCGAGATCGGCGAGGAGGTCAAGAAACAAAAGAAGCCCAAGCCG
AACAACAAGAAGCTCCGCCAAGAAGCGGCAGCCAAAATAGCCTCCGGAGA
AGGCGGCGACGAGGAGCTGACCACAAACGGAGATGCCAAACCGGCAACAC
CGGCCGCTCAGCCGGCAAAGAAGAAGGGGAACAAGGGCAAGAAAAGCGGT
CAGACTGATCCGCCCACCATACCCATTGCTAAGCTTTATCCGGACGGCAA
CTTCCCCGAGGGCGAGATCGTGGAGCACCCCACGCCCAAGGATATGCCCG
ACGATCGTACGGCCAAGGACCGATTCACATCGGAGGAGAAGCGTGCTCTG
GACCGTATCAACACGGACATCTACCAGGAATTGCGCCAGGCGGCTGAGGC
CCATCGTCAGACGCGTCAGTATATGCAGCGCTACATTAAGCCGGGCATGA
CCATGATCCAAATCTGCGAGGAGCTGGAGAACACTGCTCGGCGCCTGATC
GGCGAAAATGGTCTGGAGGCTGGTTTGGCCTTCCCGACTGGTTGCTCTCT
TAACCATTGCGCCGCCCACTACACGCCCAATGCCGGAGACCCCACTGTAC
TGCAGTACGACGATGTGTGCAAGATTGATTTTGGTACCCATATCAAGGGG
CGGATCATTGATTGCGCCTTCACCCTGACCTTCAACAACAAGTACGACAA
GTTGCTGCAGGCCGTCAAGGAGGCCACCAACACGGGCATCAGAGAGGCGG
GCATCGATGTGCGCCTATGCGACATCGGCGCCGCTATCCAGGAGGTCATG
GAGTCGTACGAGATCGAGTTGGACGGCAAAACATATCCCATCAAGGCGAT
TCGCAA
BS07389.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4008-PA | 1347 | und-RA | 1..890 | 17..906 | 4450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
und-RC | 1628 | CG4008-RC | 137..1030 | 13..906 | 4455 | 99.9 | Plus |
und-RB | 1582 | CG4008-RB | 91..984 | 13..906 | 4455 | 99.9 | Plus |
und-RA | 1748 | CG4008-RA | 257..1150 | 13..906 | 4455 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9763834..9764619 | 121..906 | 3930 | 100 | Plus |
2L | 23513712 | 2L | 9763625..9763734 | 13..122 | 535 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:59:04 has no hits.
BS07389.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:28 Download gff for
BS07389.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
und-PA | 1..888 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:09 Download gff for
BS07389.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4008-PA | 1..888 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:21:36 Download gff for
BS07389.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
und-RA | 281..1172 | 13..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:32:06 Download gff for
BS07389.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
und-RA | 257..1148 | 13..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:32:06 Download gff for
BS07389.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9763625..9763734 | 14..122 | 98 | -> | Plus |
2L | 9763836..9764617 | 123..904 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:21:36 Download gff for
BS07389.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9763625..9763734 | 14..122 | 98 | -> | Plus |
arm_2L | 9763836..9764617 | 123..904 | 100 | | Plus |
BS07389.complete Sequence
1379 bp (1379 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635838
> BS07389.complete
GAAGTTATCAGTCGACATGTCTGCAACCGAGACTCTGAATGTGGAGGCGG
CAACGCCCGAGATCGGCGAGGAGGTCAAGAAACAAAAGAAGCCCAAGCCG
AACAACAAGAAGCTCCGCCAAGAAGCGGCAGCCAAAATAGCCTCCGGAGA
AGGCGGCGACGAGGAGCTGACCACAAACGGAGATGCCAAACCGGCAACAC
CGGCCGCTCAGCCGGCAAAGAAGAAGGGGAACAAGGGCAAGAAAAGCGGT
CAGACTGATCCGCCCACCATACCCATTGCTAAGCTTTATCCGGACGGCAA
CTTCCCCGAGGGCGAGATCGTGGAGCACCCCACGCCCAAGGATATGCCCG
ACGATCGTACGGCCAAGGACCGATTCACATCGGAGGAGAAGCGTGCTCTG
GACCGTATCAACACGGACATCTACCAGGAATTGCGCCAGGCGGCTGAGGC
CCATCGTCAGACGCGTCAGTATATGCAGCGCTACATTAAGCCGGGCATGA
CCATGATCCAAATCTGCGAGGAGCTGGAGAACACTGCTCGGCGCCTGATC
GGCGAAAATGGTCTGGAGGCTGGTTTGGCCTTCCCGACTGGTTGCTCTCT
TAACCATTGCGCCGCCCACTACACGCCCAATGCCGGAGACCCCACTGTAC
TGCAGTACGACGATGTGTGCAAGATTGATTTTGGTACCCATATCAAGGGG
CGGATCATTGATTGCGCCTTCACCCTGACCTTCAACAACAAGTACGACAA
GTTGCTGCAGGCCGTCAAGGAGGCCACCAACACGGGCATCAGAGAGGCGG
GCATCGATGTGCGCCTATGCGACATCGGCGCCGCTATCCAGGAGGTCATG
GAGTCGTACGAGATCGAGTTGGACGGCAAAACATATCCCATCAAGGCGAT
TCGCAACTTAAATGGACACTCCATCAGCCCGTACCGCATTCATGCTGGAA
AAACGGTGCCCATTGTGAAAGGCGGAGAGTCCACTCGCATGGAGGAGGAT
GAATTCTACGCCATTGAGACGTTCGGCTCGACGGGTCGCGGTCTGGTCCA
TGACGATATGGACTGCTCGCATTACATGAAGAACTTTGATCTGCCGTTTG
TGCCGCTGCGCCTGCAGTCATCCAAGCAGCTGCTTGGCACCATCAACAAA
AACTTCGGCACCCTGGCCTTCTGCAAGCGTTGGCTGGACCGCGCCGGTGC
CACGAAGTACCAGATGGCTCTCAAGGATCTGTGCGACAAGGGCATTGTGG
AGGCTTATCCGCCGTTGTGCGACATTAAGGGCTGCTACACGGCTCAGTAC
GAACACACAATTATGCTGCGACCCACCTGCAAAGAAGTCGTTTCCCGTGG
CGACGACTACTAGAAGCTTTCTAGACCAT
BS07389.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:21:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
und-RC | 1347 | CG4008-PC | 1..1347 | 17..1363 | 6735 | 100 | Plus |
und-RB | 1347 | CG4008-PB | 1..1347 | 17..1363 | 6735 | 100 | Plus |
und-RA | 1347 | CG4008-PA | 1..1347 | 17..1363 | 6735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:22:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
und-RC | 1628 | CG4008-RC | 137..1487 | 13..1363 | 6740 | 99.9 | Plus |
und-RB | 1582 | CG4008-RB | 91..1441 | 13..1363 | 6740 | 99.9 | Plus |
und-RA | 1748 | CG4008-RA | 257..1607 | 13..1363 | 6740 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:21:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9763834..9764649 | 121..936 | 4080 | 100 | Plus |
2L | 23513712 | 2L | 9764770..9765197 | 936..1363 | 2140 | 100 | Plus |
2L | 23513712 | 2L | 9763625..9763734 | 13..122 | 535 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:21:57 has no hits.
BS07389.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:09 Download gff for
BS07389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
und-RA | 1..1347 | 17..1363 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:17 Download gff for
BS07389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
und-RA | 281..1631 | 13..1363 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:05 Download gff for
BS07389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
und-RA | 285..1631 | 17..1363 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:09 Download gff for
BS07389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
und-RA | 281..1631 | 13..1363 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:57 Download gff for
BS07389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
und-RA | 261..1607 | 17..1363 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:57 Download gff for
BS07389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9763629..9763734 | 17..122 | 100 | -> | Plus |
2L | 9763836..9764648 | 123..935 | 100 | -> | Plus |
2L | 9764770..9765197 | 936..1363 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:05 Download gff for
BS07389.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9763629..9763734 | 17..122 | 100 | -> | Plus |
arm_2L | 9763836..9764648 | 123..935 | 100 | -> | Plus |
arm_2L | 9764770..9765197 | 936..1363 | 100 | | Plus |
BS07389.pep Sequence
Translation from 16 to 1362
> BS07389.pep
MSATETLNVEAATPEIGEEVKKQKKPKPNNKKLRQEAAAKIASGEGGDEE
LTTNGDAKPATPAAQPAKKKGNKGKKSGQTDPPTIPIAKLYPDGNFPEGE
IVEHPTPKDMPDDRTAKDRFTSEEKRALDRINTDIYQELRQAAEAHRQTR
QYMQRYIKPGMTMIQICEELENTARRLIGENGLEAGLAFPTGCSLNHCAA
HYTPNAGDPTVLQYDDVCKIDFGTHIKGRIIDCAFTLTFNNKYDKLLQAV
KEATNTGIREAGIDVRLCDIGAAIQEVMESYEIELDGKTYPIKAIRNLNG
HSISPYRIHAGKTVPIVKGGESTRMEEDEFYAIETFGSTGRGLVHDDMDC
SHYMKNFDLPFVPLRLQSSKQLLGTINKNFGTLAFCKRWLDRAGATKYQM
ALKDLCDKGIVEAYPPLCDIKGCYTAQYEHTIMLRPTCKEVVSRGDDY*
BS07389.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
und-PC | 448 | CG4008-PC | 1..448 | 1..448 | 2378 | 100 | Plus |
und-PB | 448 | CG4008-PB | 1..448 | 1..448 | 2378 | 100 | Plus |
und-PA | 448 | CG4008-PA | 1..448 | 1..448 | 2378 | 100 | Plus |
CG10576-PD | 391 | CG10576-PD | 58..333 | 171..443 | 233 | 26.9 | Plus |
CG10576-PC | 391 | CG10576-PC | 58..333 | 171..443 | 233 | 26.9 | Plus |