Clone Sequence Records
BS07395.3prime Sequence
930 bp (819 high quality bases) assembled on 2006-01-06
> BS07395.3prime
ATGGTCTAGAAAGCTTCTAGACATTCGCAATGTTGCTAATTATTTTCTGA
AATATCTGCACACCGCGCAAATAGATATCCGCCTGAATGAACTCATCGTG
ATCGTGGAGCAATACAGGTGTATTATTCATGGGTGAGAAGCCCAAAGCTG
GGATGCCAACGGCACGAATGTATCTGCTATCAGTTCCTCCGGTAAATATT
TGCGGTTTGATGGATATGTGCATCTCATCGGTAGCTTTCTTGAAAGCAAG
CCAGAAGGGATTACTCCCATCGATGGCGGTGGGCGGGACTTTAGGTTGCT
TCTGTTCGTAAGTGATCTCGATGCCACCACCCACGTCGGCACACCATTTG
TGGAGGTTAGCCTCAAACTCCTCAAAGTCCACATCTAGAGCCAAACGACA
ATCGAAGCAGACCATTAGCAAGGGAGGCACCACATTGCTCTGAACTCCGC
CACCGAGTTTGGTCAAATTAATGGTCGTTACATCGCCAATGACCAACTCT
GGATTATTCTGCAATCTTTGAACCTGACTCCTACGAAACTCCATCATCTT
TCCGACTATATAGTTCAGTTTTTCACCAGCAGTATTGGGCAGCAAAAGCG
ATCCATGACCAGCAGTCCCACTGATGTTGAAATATACACGCCAAACTGCT
CGTTCTGCATAGAAAAGAGGCAGCTGCTCATCGGGTGAAGCCAATCCCTC
GTCCATTGCAAATCCCACATTAAGAGCACGGAAATCTTCAGTTGGCACAA
AAGGTCTCATGCCATAACGACCGCCCATTTCCTCATCCGCCACAAAGGAA
ATGTGGATAGTTCGTTTGAATTTCGCTCCACTTCTCTTGAGCGCTCTAAC
TGCGGCTAGATGCTGCATTCCCACGGACTTCATATCTTGTGTTCCCCTGG
CAAAAATGCGACCCTCCTCATCGATGTCGG
BS07395.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6465-PA | 1206 | CG6465-RA | 293..1206 | 930..17 | 4570 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:11:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6465-RA | 1377 | CG6465-RA | 384..1297 | 930..17 | 4570 | 100 | Minus |
CG17110-RC | 2911 | CG17110-RC | 632..727 | 632..537 | 240 | 83.3 | Minus |
CG6726-RC | 2911 | CG6726-RC | 632..727 | 632..537 | 240 | 83.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:11:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10676094..10676377 | 356..639 | 1420 | 100 | Plus |
3R | 32079331 | 3R | 10675640..10675844 | 17..221 | 1025 | 100 | Plus |
3R | 32079331 | 3R | 10676440..10676589 | 638..787 | 750 | 100 | Plus |
3R | 32079331 | 3R | 10676650..10676793 | 787..930 | 720 | 100 | Plus |
3R | 32079331 | 3R | 10675902..10676036 | 221..355 | 675 | 100 | Plus |
3R | 32079331 | 3R | 23092608..23092703 | 632..537 | 240 | 83.3 | Minus |
3R | 32079331 | 3R | 23098473..23098537 | 624..560 | 190 | 86.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:11:15 has no hits.
BS07395.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:38 Download gff for
BS07395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6465-PA | 293..1206 | 17..930 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:23 Download gff for
BS07395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6465-PA | 293..1206 | 17..930 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:52:51 Download gff for
BS07395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6465-RA | 384..1299 | 11..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:54:58 Download gff for
BS07395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6465-RA | 384..1299 | 11..930 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:54:58 Download gff for
BS07395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10675638..10675844 | 11..221 | 98 | <- | Plus |
3R | 10675903..10676036 | 222..355 | 100 | <- | Plus |
3R | 10676094..10676377 | 356..639 | 100 | <- | Plus |
3R | 10676442..10676588 | 640..786 | 100 | <- | Plus |
3R | 10676650..10676793 | 787..930 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:52:51 Download gff for
BS07395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6501816..6502099 | 356..639 | 100 | <- | Plus |
arm_3R | 6502164..6502310 | 640..786 | 100 | <- | Plus |
arm_3R | 6502372..6502515 | 787..930 | 100 | | Plus |
arm_3R | 6501360..6501566 | 11..221 | 98 | <- | Plus |
arm_3R | 6501625..6501758 | 222..355 | 100 | <- | Plus |
BS07395.5prime Sequence
819 bp (818 high quality bases) assembled on 2006-01-06
> BS07395.5prime
GAAGTTATCAGTCGACATGGCCACCAGCAAGTGGGAATCCGATGAGGAGA
TACAGTACTTTCGCGAGTATCTGCGCATCCCAAGTGTCCATCCCGATCCG
GACTATGCACCATGCGTCGAATTTCTCAGACGACAGGCAAATCTGATGGA
TCTGCCAATGAAGGTGTATTACCCGGCAAATGAACAGAATCCCGTAGTGG
TTTTGACATGGAAGGGACTCAATCCCGAGTTGCCCAGCATTCTGCTGAAC
TCCCACATGGACGTGGTTCCCGTATTTCCAGAAAACTGGACTCACCCGCC
ATTTGGAGCCGACATCGATGAGGAGGGTCGCATTTTTGCCAGGGGAACAC
AAGATATGAAGTCCGTGGGAATGCAGCATCTAGCCGCAGTTAGAGCGCTC
AAGAGAAGTGGAGCGAAATTCAAACGAACTATCCACATTTCCTTTGTGGC
GGATGAGGAAATGGGCGGTCGTTATGGCATGAGACCTTTTGTGCCAACTG
AAGATTTCCGTGCTCTTAATGTGGGATTTGCAATGGACGAGGGATTGGCT
TCACCCGATGAGCAGCTGCCTCTTTTCTATGCAGAACGAGCAGTTTGGCG
TGTATATTTCAACATCAGTGGGACTGCTGGTCATGGATCGCTTTTGCTGC
CCAATACTGCTGGTGAAAAACTGAACTATATAGTCGGAAAGATGATGGAG
TTTCGTAGGAGTCAGGTTCAAAGATTGCAGAATAATCCAGAGTTGGTCAT
TGGCGATGTAACGACCATTAATTTGACCAAACTCGGTGGCGGAGTTCAGA
GCAATGTGGTGCCTCCCTT
BS07395.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6465-PA | 1206 | CG6465-RA | 1..803 | 17..819 | 4015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:13:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6465-RA | 1377 | CG6465-RA | 92..894 | 17..819 | 4015 | 100 | Plus |
CG17110-RC | 2911 | CG17110-RC | 632..727 | 607..702 | 240 | 83.3 | Plus |
CG6726-RC | 2911 | CG6726-RC | 632..727 | 607..702 | 240 | 83.3 | Plus |
CG17110-RC | 2911 | CG17110-RC | 1808..1932 | 246..370 | 190 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:13:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10676650..10676995 | 452..107 | 1730 | 100 | Minus |
3R | 32079331 | 3R | 10676158..10676377 | 819..600 | 1100 | 100 | Minus |
3R | 32079331 | 3R | 10676440..10676589 | 601..452 | 750 | 100 | Minus |
3R | 32079331 | 3R | 10677070..10677160 | 107..17 | 455 | 100 | Minus |
3R | 32079331 | 3R | 23092608..23092703 | 607..702 | 240 | 83.3 | Plus |
3R | 32079331 | 3R | 23093968..23094092 | 246..370 | 190 | 76.8 | Plus |
3R | 32079331 | 3R | 23098473..23098537 | 615..679 | 190 | 86.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:13:30 has no hits.
BS07395.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:39 Download gff for
BS07395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6465-PA | 1..803 | 17..819 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:24 Download gff for
BS07395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6465-PA | 1..803 | 17..819 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:36:26 Download gff for
BS07395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6465-RA | 82..894 | 6..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:32:47 Download gff for
BS07395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6465-RA | 82..894 | 6..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:32:47 Download gff for
BS07395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10676650..10676994 | 108..452 | 100 | <- | Minus |
3R | 10677070..10677170 | 6..107 | 96 | | Minus |
3R | 10676158..10676377 | 600..819 | 100 | <- | Minus |
3R | 10676442..10676588 | 453..599 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:36:26 Download gff for
BS07395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6501880..6502099 | 600..819 | 100 | <- | Minus |
arm_3R | 6502164..6502310 | 453..599 | 100 | <- | Minus |
arm_3R | 6502372..6502716 | 108..452 | 100 | <- | Minus |
arm_3R | 6502792..6502892 | 6..107 | 96 | | Minus |
BS07395.complete Sequence
1238 bp (1238 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635840
> BS07395.complete
GAAGTTATCAGTCGACATGGCCACCAGCAAGTGGGAATCCGATGAGGAGA
TACAGTACTTTCGCGAGTATCTGCGCATCCCAAGTGTCCATCCCGATCCG
GACTATGCACCATGCGTCGAATTTCTCAGACGACAGGCAAATCTGATGGA
TCTGCCAATGAAGGTGTATTACCCGGCAAATGAACAGAATCCCGTAGTGG
TTTTGACATGGAAGGGACTCAATCCCGAGTTGCCCAGCATTCTGCTGAAC
TCCCACATGGACGTGGTTCCCGTATTTCCAGAAAACTGGACTCACCCGCC
ATTTGGAGCCGACATCGATGAGGAGGGTCGCATTTTTGCCAGGGGAACAC
AAGATATGAAGTCCGTGGGAATGCAGCATCTAGCCGCAGTTAGAGCGCTC
AAGAGAAGTGGAGCGAAATTCAAACGAACTATCCACATTTCCTTTGTGGC
GGATGAGGAAATGGGCGGTCGTTATGGCATGAGACCTTTTGTGCCAACTG
AAGATTTCCGTGCTCTTAATGTGGGATTTGCAATGGACGAGGGATTGGCT
TCACCCGATGAGCAGCTGCCTCTTTTCTATGCAGAACGAGCAGTTTGGCG
TGTATATTTCAACATCAGTGGGACTGCTGGTCATGGATCGCTTTTGCTGC
CCAATACTGCTGGTGAAAAACTGAACTATATAGTCGGAAAGATGATGGAG
TTTCGTAGGAGTCAGGTTCAAAGATTGCAGAATAATCCAGAGTTGGTCAT
TGGCGATGTAACGACCATTAATTTGACCAAACTCGGTGGCGGAGTTCAGA
GCAATGTGGTGCCTCCCTTGCTAATGGTCTGCTTCGATTGTCGTTTGGCT
CTAGATGTGGACTTTGAGGAGTTTGAGGCTAACCTCCACAAATGGTGTGC
CGACGTGGGTGGTGGCATCGAGATCACTTACGAACAGAAGCAACCTAAAG
TCCCGCCCACCGCCATCGATGGGAGTAATCCCTTCTGGCTTGCTTTCAAG
AAAGCTACCGATGAGATGCACATATCCATCAAACCGCAAATATTTACCGG
AGGAACTGATAGCAGATACATTCGTGCCGTTGGCATCCCAGCTTTGGGCT
TCTCACCCATGAATAATACACCTGTATTGCTCCACGATCACGATGAGTTC
ATTCAGGCGGATATCTATTTGCGCGGTGTGCAGATATTTCAGAAAATAAT
TAGCAACATTGCGAATGTCTAGAAGCTTTCTAGACCAT
BS07395.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:56:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6465-RA | 1206 | CG6465-PA | 1..1206 | 17..1222 | 6030 | 100 | Plus |
CG6726-RC | 1206 | CG6726-PC | 591..686 | 607..702 | 240 | 83.3 | Plus |
CG6726-RA | 1206 | CG6726-PA | 591..686 | 607..702 | 240 | 83.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:56:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6465-RA | 1377 | CG6465-RA | 92..1297 | 17..1222 | 6030 | 100 | Plus |
CG17110-RC | 2911 | CG17110-RC | 632..727 | 607..702 | 240 | 83.3 | Plus |
CG6726-RC | 2911 | CG6726-RC | 632..727 | 607..702 | 240 | 83.3 | Plus |
CG17110-RC | 2911 | CG17110-RC | 1808..1932 | 246..370 | 190 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:55:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10676650..10676995 | 452..107 | 1730 | 100 | Minus |
3R | 32079331 | 3R | 10676094..10676377 | 883..600 | 1420 | 100 | Minus |
3R | 32079331 | 3R | 10675640..10675844 | 1222..1018 | 1025 | 100 | Minus |
3R | 32079331 | 3R | 10676440..10676589 | 601..452 | 750 | 100 | Minus |
3R | 32079331 | 3R | 10675902..10676036 | 1018..884 | 675 | 100 | Minus |
3R | 32079331 | 3R | 10677070..10677160 | 107..17 | 455 | 100 | Minus |
3R | 32079331 | 3R | 23092608..23092703 | 607..702 | 240 | 83.3 | Plus |
3R | 32079331 | 3R | 23093968..23094092 | 246..370 | 190 | 76.8 | Plus |
3R | 32079331 | 3R | 23098473..23098537 | 615..679 | 190 | 86.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:55:59 has no hits.
BS07395.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:10 Download gff for
BS07395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6465-RA | 1..1206 | 17..1222 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:19 Download gff for
BS07395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6465-RA | 1..1218 | 6..1228 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:37 Download gff for
BS07395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6465-RA | 92..1297 | 17..1222 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:10 Download gff for
BS07395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6465-RA | 1..1218 | 6..1228 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:27 Download gff for
BS07395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6465-RA | 92..1297 | 17..1222 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:27 Download gff for
BS07395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10675640..10675844 | 1018..1222 | 100 | <- | Minus |
3R | 10675903..10676036 | 884..1017 | 100 | <- | Minus |
3R | 10676094..10676377 | 600..883 | 100 | <- | Minus |
3R | 10676442..10676588 | 453..599 | 100 | <- | Minus |
3R | 10676650..10676994 | 108..452 | 100 | <- | Minus |
3R | 10677070..10677160 | 17..107 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:37 Download gff for
BS07395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6501362..6501566 | 1018..1222 | 100 | <- | Minus |
arm_3R | 6501625..6501758 | 884..1017 | 100 | <- | Minus |
arm_3R | 6501816..6502099 | 600..883 | 100 | <- | Minus |
arm_3R | 6502164..6502310 | 453..599 | 100 | <- | Minus |
arm_3R | 6502372..6502716 | 108..452 | 100 | <- | Minus |
arm_3R | 6502792..6502882 | 17..107 | 100 | | Minus |
BS07395.pep Sequence
Translation from 16 to 1221
> BS07395.pep
MATSKWESDEEIQYFREYLRIPSVHPDPDYAPCVEFLRRQANLMDLPMKV
YYPANEQNPVVVLTWKGLNPELPSILLNSHMDVVPVFPENWTHPPFGADI
DEEGRIFARGTQDMKSVGMQHLAAVRALKRSGAKFKRTIHISFVADEEMG
GRYGMRPFVPTEDFRALNVGFAMDEGLASPDEQLPLFYAERAVWRVYFNI
SGTAGHGSLLLPNTAGEKLNYIVGKMMEFRRSQVQRLQNNPELVIGDVTT
INLTKLGGGVQSNVVPPLLMVCFDCRLALDVDFEEFEANLHKWCADVGGG
IEITYEQKQPKVPPTAIDGSNPFWLAFKKATDEMHISIKPQIFTGGTDSR
YIRAVGIPALGFSPMNNTPVLLHDHDEFIQADIYLRGVQIFQKIISNIAN
V*
BS07395.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6465-PA | 401 | CG6465-PA | 1..401 | 1..401 | 2128 | 100 | Plus |
CG6726-PC | 401 | CG6726-PC | 1..400 | 1..400 | 1409 | 64 | Plus |
CG6726-PA | 401 | CG6726-PA | 1..400 | 1..400 | 1409 | 64 | Plus |
CG6726-PB | 401 | CG6726-PB | 1..400 | 1..400 | 1409 | 64 | Plus |
CG17109-PB | 400 | CG17109-PB | 1..400 | 1..401 | 1300 | 60.3 | Plus |