Clone BS07395 Report

Search the DGRC for BS07395

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:73
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptCG6465-RA
Protein status:BS07395.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07395.3prime Sequence

930 bp (819 high quality bases) assembled on 2006-01-06

> BS07395.3prime
ATGGTCTAGAAAGCTTCTAGACATTCGCAATGTTGCTAATTATTTTCTGA
AATATCTGCACACCGCGCAAATAGATATCCGCCTGAATGAACTCATCGTG
ATCGTGGAGCAATACAGGTGTATTATTCATGGGTGAGAAGCCCAAAGCTG
GGATGCCAACGGCACGAATGTATCTGCTATCAGTTCCTCCGGTAAATATT
TGCGGTTTGATGGATATGTGCATCTCATCGGTAGCTTTCTTGAAAGCAAG
CCAGAAGGGATTACTCCCATCGATGGCGGTGGGCGGGACTTTAGGTTGCT
TCTGTTCGTAAGTGATCTCGATGCCACCACCCACGTCGGCACACCATTTG
TGGAGGTTAGCCTCAAACTCCTCAAAGTCCACATCTAGAGCCAAACGACA
ATCGAAGCAGACCATTAGCAAGGGAGGCACCACATTGCTCTGAACTCCGC
CACCGAGTTTGGTCAAATTAATGGTCGTTACATCGCCAATGACCAACTCT
GGATTATTCTGCAATCTTTGAACCTGACTCCTACGAAACTCCATCATCTT
TCCGACTATATAGTTCAGTTTTTCACCAGCAGTATTGGGCAGCAAAAGCG
ATCCATGACCAGCAGTCCCACTGATGTTGAAATATACACGCCAAACTGCT
CGTTCTGCATAGAAAAGAGGCAGCTGCTCATCGGGTGAAGCCAATCCCTC
GTCCATTGCAAATCCCACATTAAGAGCACGGAAATCTTCAGTTGGCACAA
AAGGTCTCATGCCATAACGACCGCCCATTTCCTCATCCGCCACAAAGGAA
ATGTGGATAGTTCGTTTGAATTTCGCTCCACTTCTCTTGAGCGCTCTAAC
TGCGGCTAGATGCTGCATTCCCACGGACTTCATATCTTGTGTTCCCCTGG
CAAAAATGCGACCCTCCTCATCGATGTCGG

BS07395.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG6465-PA 1206 CG6465-RA 293..1206 930..17 4570 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6465-RA 1377 CG6465-RA 384..1297 930..17 4570 100 Minus
CG17110-RC 2911 CG17110-RC 632..727 632..537 240 83.3 Minus
CG6726-RC 2911 CG6726-RC 632..727 632..537 240 83.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:11:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10676094..10676377 356..639 1420 100 Plus
3R 32079331 3R 10675640..10675844 17..221 1025 100 Plus
3R 32079331 3R 10676440..10676589 638..787 750 100 Plus
3R 32079331 3R 10676650..10676793 787..930 720 100 Plus
3R 32079331 3R 10675902..10676036 221..355 675 100 Plus
3R 32079331 3R 23092608..23092703 632..537 240 83.3 Minus
3R 32079331 3R 23098473..23098537 624..560 190 86.2 Minus
Blast to na_te.dros performed on 2015-02-12 19:11:15 has no hits.

BS07395.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:38 Download gff for BS07395.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6465-PA 293..1206 17..930 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:23 Download gff for BS07395.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6465-PA 293..1206 17..930 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:52:51 Download gff for BS07395.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6465-RA 384..1299 11..930 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:54:58 Download gff for BS07395.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6465-RA 384..1299 11..930 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:54:58 Download gff for BS07395.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10675638..10675844 11..221 98 <- Plus
3R 10675903..10676036 222..355 100 <- Plus
3R 10676094..10676377 356..639 100 <- Plus
3R 10676442..10676588 640..786 100 <- Plus
3R 10676650..10676793 787..930 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:52:51 Download gff for BS07395.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6501816..6502099 356..639 100 <- Plus
arm_3R 6502164..6502310 640..786 100 <- Plus
arm_3R 6502372..6502515 787..930 100   Plus
arm_3R 6501360..6501566 11..221 98 <- Plus
arm_3R 6501625..6501758 222..355 100 <- Plus

BS07395.5prime Sequence

819 bp (818 high quality bases) assembled on 2006-01-06

> BS07395.5prime
GAAGTTATCAGTCGACATGGCCACCAGCAAGTGGGAATCCGATGAGGAGA
TACAGTACTTTCGCGAGTATCTGCGCATCCCAAGTGTCCATCCCGATCCG
GACTATGCACCATGCGTCGAATTTCTCAGACGACAGGCAAATCTGATGGA
TCTGCCAATGAAGGTGTATTACCCGGCAAATGAACAGAATCCCGTAGTGG
TTTTGACATGGAAGGGACTCAATCCCGAGTTGCCCAGCATTCTGCTGAAC
TCCCACATGGACGTGGTTCCCGTATTTCCAGAAAACTGGACTCACCCGCC
ATTTGGAGCCGACATCGATGAGGAGGGTCGCATTTTTGCCAGGGGAACAC
AAGATATGAAGTCCGTGGGAATGCAGCATCTAGCCGCAGTTAGAGCGCTC
AAGAGAAGTGGAGCGAAATTCAAACGAACTATCCACATTTCCTTTGTGGC
GGATGAGGAAATGGGCGGTCGTTATGGCATGAGACCTTTTGTGCCAACTG
AAGATTTCCGTGCTCTTAATGTGGGATTTGCAATGGACGAGGGATTGGCT
TCACCCGATGAGCAGCTGCCTCTTTTCTATGCAGAACGAGCAGTTTGGCG
TGTATATTTCAACATCAGTGGGACTGCTGGTCATGGATCGCTTTTGCTGC
CCAATACTGCTGGTGAAAAACTGAACTATATAGTCGGAAAGATGATGGAG
TTTCGTAGGAGTCAGGTTCAAAGATTGCAGAATAATCCAGAGTTGGTCAT
TGGCGATGTAACGACCATTAATTTGACCAAACTCGGTGGCGGAGTTCAGA
GCAATGTGGTGCCTCCCTT

BS07395.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG6465-PA 1206 CG6465-RA 1..803 17..819 4015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG6465-RA 1377 CG6465-RA 92..894 17..819 4015 100 Plus
CG17110-RC 2911 CG17110-RC 632..727 607..702 240 83.3 Plus
CG6726-RC 2911 CG6726-RC 632..727 607..702 240 83.3 Plus
CG17110-RC 2911 CG17110-RC 1808..1932 246..370 190 76.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10676650..10676995 452..107 1730 100 Minus
3R 32079331 3R 10676158..10676377 819..600 1100 100 Minus
3R 32079331 3R 10676440..10676589 601..452 750 100 Minus
3R 32079331 3R 10677070..10677160 107..17 455 100 Minus
3R 32079331 3R 23092608..23092703 607..702 240 83.3 Plus
3R 32079331 3R 23093968..23094092 246..370 190 76.8 Plus
3R 32079331 3R 23098473..23098537 615..679 190 86.2 Plus
Blast to na_te.dros performed on 2015-02-12 20:13:30 has no hits.

BS07395.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:39 Download gff for BS07395.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6465-PA 1..803 17..819 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:24 Download gff for BS07395.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6465-PA 1..803 17..819 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:36:26 Download gff for BS07395.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6465-RA 82..894 6..819 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:32:47 Download gff for BS07395.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6465-RA 82..894 6..819 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:32:47 Download gff for BS07395.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10676650..10676994 108..452 100 <- Minus
3R 10677070..10677170 6..107 96   Minus
3R 10676158..10676377 600..819 100 <- Minus
3R 10676442..10676588 453..599 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:36:26 Download gff for BS07395.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6501880..6502099 600..819 100 <- Minus
arm_3R 6502164..6502310 453..599 100 <- Minus
arm_3R 6502372..6502716 108..452 100 <- Minus
arm_3R 6502792..6502892 6..107 96   Minus

BS07395.complete Sequence

1238 bp (1238 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635840

> BS07395.complete
GAAGTTATCAGTCGACATGGCCACCAGCAAGTGGGAATCCGATGAGGAGA
TACAGTACTTTCGCGAGTATCTGCGCATCCCAAGTGTCCATCCCGATCCG
GACTATGCACCATGCGTCGAATTTCTCAGACGACAGGCAAATCTGATGGA
TCTGCCAATGAAGGTGTATTACCCGGCAAATGAACAGAATCCCGTAGTGG
TTTTGACATGGAAGGGACTCAATCCCGAGTTGCCCAGCATTCTGCTGAAC
TCCCACATGGACGTGGTTCCCGTATTTCCAGAAAACTGGACTCACCCGCC
ATTTGGAGCCGACATCGATGAGGAGGGTCGCATTTTTGCCAGGGGAACAC
AAGATATGAAGTCCGTGGGAATGCAGCATCTAGCCGCAGTTAGAGCGCTC
AAGAGAAGTGGAGCGAAATTCAAACGAACTATCCACATTTCCTTTGTGGC
GGATGAGGAAATGGGCGGTCGTTATGGCATGAGACCTTTTGTGCCAACTG
AAGATTTCCGTGCTCTTAATGTGGGATTTGCAATGGACGAGGGATTGGCT
TCACCCGATGAGCAGCTGCCTCTTTTCTATGCAGAACGAGCAGTTTGGCG
TGTATATTTCAACATCAGTGGGACTGCTGGTCATGGATCGCTTTTGCTGC
CCAATACTGCTGGTGAAAAACTGAACTATATAGTCGGAAAGATGATGGAG
TTTCGTAGGAGTCAGGTTCAAAGATTGCAGAATAATCCAGAGTTGGTCAT
TGGCGATGTAACGACCATTAATTTGACCAAACTCGGTGGCGGAGTTCAGA
GCAATGTGGTGCCTCCCTTGCTAATGGTCTGCTTCGATTGTCGTTTGGCT
CTAGATGTGGACTTTGAGGAGTTTGAGGCTAACCTCCACAAATGGTGTGC
CGACGTGGGTGGTGGCATCGAGATCACTTACGAACAGAAGCAACCTAAAG
TCCCGCCCACCGCCATCGATGGGAGTAATCCCTTCTGGCTTGCTTTCAAG
AAAGCTACCGATGAGATGCACATATCCATCAAACCGCAAATATTTACCGG
AGGAACTGATAGCAGATACATTCGTGCCGTTGGCATCCCAGCTTTGGGCT
TCTCACCCATGAATAATACACCTGTATTGCTCCACGATCACGATGAGTTC
ATTCAGGCGGATATCTATTTGCGCGGTGTGCAGATATTTCAGAAAATAAT
TAGCAACATTGCGAATGTCTAGAAGCTTTCTAGACCAT

BS07395.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG6465-RA 1206 CG6465-PA 1..1206 17..1222 6030 100 Plus
CG6726-RC 1206 CG6726-PC 591..686 607..702 240 83.3 Plus
CG6726-RA 1206 CG6726-PA 591..686 607..702 240 83.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG6465-RA 1377 CG6465-RA 92..1297 17..1222 6030 100 Plus
CG17110-RC 2911 CG17110-RC 632..727 607..702 240 83.3 Plus
CG6726-RC 2911 CG6726-RC 632..727 607..702 240 83.3 Plus
CG17110-RC 2911 CG17110-RC 1808..1932 246..370 190 76.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:55:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10676650..10676995 452..107 1730 100 Minus
3R 32079331 3R 10676094..10676377 883..600 1420 100 Minus
3R 32079331 3R 10675640..10675844 1222..1018 1025 100 Minus
3R 32079331 3R 10676440..10676589 601..452 750 100 Minus
3R 32079331 3R 10675902..10676036 1018..884 675 100 Minus
3R 32079331 3R 10677070..10677160 107..17 455 100 Minus
3R 32079331 3R 23092608..23092703 607..702 240 83.3 Plus
3R 32079331 3R 23093968..23094092 246..370 190 76.8 Plus
3R 32079331 3R 23098473..23098537 615..679 190 86.2 Plus
Blast to na_te.dros performed on 2014-11-27 10:55:59 has no hits.

BS07395.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:10 Download gff for BS07395.complete
Subject Subject Range Query Range Percent Splice Strand
CG6465-RA 1..1206 17..1222 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:19 Download gff for BS07395.complete
Subject Subject Range Query Range Percent Splice Strand
CG6465-RA 1..1218 6..1228 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:37 Download gff for BS07395.complete
Subject Subject Range Query Range Percent Splice Strand
CG6465-RA 92..1297 17..1222 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:10 Download gff for BS07395.complete
Subject Subject Range Query Range Percent Splice Strand
CG6465-RA 1..1218 6..1228 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:27 Download gff for BS07395.complete
Subject Subject Range Query Range Percent Splice Strand
CG6465-RA 92..1297 17..1222 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:27 Download gff for BS07395.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10675640..10675844 1018..1222 100 <- Minus
3R 10675903..10676036 884..1017 100 <- Minus
3R 10676094..10676377 600..883 100 <- Minus
3R 10676442..10676588 453..599 100 <- Minus
3R 10676650..10676994 108..452 100 <- Minus
3R 10677070..10677160 17..107 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:37 Download gff for BS07395.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6501362..6501566 1018..1222 100 <- Minus
arm_3R 6501625..6501758 884..1017 100 <- Minus
arm_3R 6501816..6502099 600..883 100 <- Minus
arm_3R 6502164..6502310 453..599 100 <- Minus
arm_3R 6502372..6502716 108..452 100 <- Minus
arm_3R 6502792..6502882 17..107 100   Minus

BS07395.pep Sequence

Translation from 16 to 1221

> BS07395.pep
MATSKWESDEEIQYFREYLRIPSVHPDPDYAPCVEFLRRQANLMDLPMKV
YYPANEQNPVVVLTWKGLNPELPSILLNSHMDVVPVFPENWTHPPFGADI
DEEGRIFARGTQDMKSVGMQHLAAVRALKRSGAKFKRTIHISFVADEEMG
GRYGMRPFVPTEDFRALNVGFAMDEGLASPDEQLPLFYAERAVWRVYFNI
SGTAGHGSLLLPNTAGEKLNYIVGKMMEFRRSQVQRLQNNPELVIGDVTT
INLTKLGGGVQSNVVPPLLMVCFDCRLALDVDFEEFEANLHKWCADVGGG
IEITYEQKQPKVPPTAIDGSNPFWLAFKKATDEMHISIKPQIFTGGTDSR
YIRAVGIPALGFSPMNNTPVLLHDHDEFIQADIYLRGVQIFQKIISNIAN
V*

BS07395.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG6465-PA 401 CG6465-PA 1..401 1..401 2128 100 Plus
CG6726-PC 401 CG6726-PC 1..400 1..400 1409 64 Plus
CG6726-PA 401 CG6726-PA 1..400 1..400 1409 64 Plus
CG6726-PB 401 CG6726-PB 1..400 1..400 1409 64 Plus
CG17109-PB 400 CG17109-PB 1..400 1..401 1300 60.3 Plus