Clone BS07401 Report

Search the DGRC for BS07401

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptCG31358-RA
Protein status:BS07401.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07401.3prime Sequence

952 bp (785 high quality bases) assembled on 2006-01-06

> BS07401.3prime
ATGGTCTAGAAAGCTTTTAAAAGTAATAATTTTTGTCGGCCTTTGATACT
TTTGGATCCTTTTCTGGCGGAGTCGATGTGGACTTTGGAGGCGGTATGGG
CCGTTCCGGAATGGGTGGTAGAGTTGGGTGTGGAGGAATTGGAGGAAGTG
TCGGGTGAGGCGGCACCGGGGGCAGTGAGGGATGATCAGGACGCGGAGGA
ATGGGAATGGATGAAGGCTTAGTAGGAGAACTCGAACGTGCTGGGGGCTT
GGTCAGAAGTGGATAGGGTTCGATTGCATCATCGGTTCGATTGGATCTAG
GCGACGGCTGACCACTTTGCGGGCGAACTCTTCGACTGCTAGTTGGTTGT
TCACCATCCTGGGCAGATCGAGAGGGTCTGAAAAATGGTGGCCATAGCCA
CGAACGCGCCGGTTTGTTTTCTTCCACACTCTCAGTGGTTTTTCCAACTT
CGGGTTTTTCAGTTGTGCTATCTGTTTGGGCATCATTAAAGAAATCAGGT
GGTGTACCCGAGATGTAAACTTTTGGTGAAAATAAATGTAAATAATCGTA
ATCGTCATCGCTATCCCTCCGGTCATCATCATCTTGTGCTGCATCCGACG
AATCCTTTCCATCCATAAAAGGTGCCATAATTTCCAAGGGTATGGGGAAA
AGTACATTAACCCGACGTTCCGATGCCATGGAACAGAGAATCTGCAGATG
CCTTAGTTGTAGGGTAATTTGGTTTTCCGACATAACATCTGAGCATTCTT
TTAAAGCCTTCGAGGCTTTAGCCTCTCCTTCTGCCAAAATGATCTTGGCC
CTGGCCTCCCTTGTCGCCTCCGCTTCGCTGGCCCATGATCGCTCCAGACT
ACTTGGCAAGGATATCTCCATCAAGTCCACTCGTTCCACTCGCACGCCCC
AACGTTCTGTGATCTTTGCAACTGCCTGCTGGATTTCCAGGGAAAGTTGC
TG

BS07401.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG31358-PA 1425 CG31358-RA 490..1425 952..17 4630 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:13:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG42505-RA 3446 CG42505-RA 546..1481 952..17 4650 99.8 Minus
CG42504-RA 3446 CG42504-RA 546..1481 952..17 4650 99.8 Minus
CG31358-RB 1979 CG31358-RB 546..1481 952..17 4650 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12030035..12030724 17..706 3435 99.9 Plus
3R 32079331 3R 12030784..12030953 703..872 820 98.8 Plus
3R 32079331 3R 12031008..12031088 872..952 405 100 Plus
Blast to na_te.dros performed 2015-01-30 14:13:19
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy7 5486 gypsy7 GYPSY7 5486bp 1750..1789 109..148 110 75 Plus

BS07401.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:42 Download gff for BS07401.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31358-PA 490..1425 17..952 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:28 Download gff for BS07401.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31358-PA 490..1425 17..952 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:00:56 Download gff for BS07401.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31358-RB 546..1487 9..952 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:32:49 Download gff for BS07401.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31358-RB 546..1487 9..952 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:32:49 Download gff for BS07401.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12030029..12030724 9..706 99 <- Plus
3R 12030788..12030953 707..872 99 <- Plus
3R 12031009..12031088 873..952 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:00:56 Download gff for BS07401.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7855751..7856446 9..706 99 <- Plus
arm_3R 7856510..7856675 707..872 99 <- Plus
arm_3R 7856731..7856810 873..952 100   Plus

BS07401.5prime Sequence

887 bp (753 high quality bases) assembled on 2006-01-06

> BS07401.5prime
GAAGTTATCAGTCGACATGAGGGAGCGATATGCAGTCGAAACAGAGAAGC
AAGATAATGTGGAACCCACCCCGGAAGATGATAACAGCAATTATATCGTT
GAAAAAGTAGCGGTGTTCGTATCATGGATTTTAGTGTTGATTTTACTTCC
ATTTTCGCTGTGTTGTTGTCTGACTATAGCCTACGAATTCCATCGACTTG
TGATATTTCGATTGGGTCGTATTAGGAGTTGCTTAGGACCAGGTTTAGTT
TTTCTTCTTCCCTGCATCGATTCGTTTAATACGGTGGACATTCGCACCGA
TGTGGTTAATGTGGATCCGCAGGAGATGCTCACCAAGGATTCGGTGTCGA
TTACAGTGAACGCAGTGGTGTTCTACTGCATCTACGATCCCATCAACTCG
ATCATCAAGGTGGACGATGCCAGGGATGCCACCGAAAGGATCTCACAGGT
CACCCTGCGAAACATTGTTGGTTCGAAAGGACTCCACGAACTTCTGGCAT
CCAGGCAGCAACTTTCCCTGGAAATCCAGCAGGCAGTTGCAAAGATCACA
GAACGTTGGGGCGTGCGAGTGGAACGAGTGGACTTGATGGAGATATCCTT
GCCAAGTAGTCTGGAGCGATCATTGGCCAGCGAAGCGGAGGCGACAAGGG
AGGCCAGGGCCAAGATCATTTTGGCAGAAGGAGAGGCTAAAGCCTCGAAG
GCTTTAAAAGAATGCTCAGATGTTATGTCGGAAAACCAAATTACCCTACA
ACTAAGGCATCTGCAGATTCTCTGTTCCATGGCATCGGAACGTCGGGTTA
ATGTACTTTTCCCCATACCCTTGGAAATTATGGCACCTTTTATGGATGGA
AAGGATTCGTCGGATGCAGCACAAGATGATGATGACC

BS07401.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG31358-PA 1425 CG31358-RA 1..871 17..887 4355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:15:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG42505-RA 3446 CG42505-RA 57..927 17..887 4355 100 Plus
CG42504-RA 3446 CG42504-RA 57..927 17..887 4355 100 Plus
CG31358-RB 1979 CG31358-RB 57..927 17..887 4355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:15:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12031008..12031370 586..224 1815 100 Minus
3R 32079331 3R 12030784..12030953 755..586 835 99.4 Minus
3R 32079331 3R 12031424..12031570 226..80 735 100 Minus
3R 32079331 3R 12030589..12030724 887..752 680 100 Minus
3R 32079331 3R 12031634..12031701 84..17 325 98.5 Minus
3R 32079331 3R 12041098..12041363 317..582 265 73.3 Plus
3R 32079331 3R 12041461..12041609 602..750 205 75.8 Plus
Blast to na_te.dros performed on 2015-02-11 13:15:36 has no hits.

BS07401.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:43 Download gff for BS07401.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31358-PA 1..871 17..887 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:29 Download gff for BS07401.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31358-PA 1..871 17..887 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:31:23 Download gff for BS07401.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31358-RB 54..927 11..887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:39:03 Download gff for BS07401.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31358-RB 54..927 11..887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:39:03 Download gff for BS07401.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12031425..12031569 81..225 100 <- Minus
3R 12031638..12031704 11..80 95   Minus
3R 12030589..12030724 752..887 100 <- Minus
3R 12030788..12030953 586..751 100 <- Minus
3R 12031009..12031368 226..585 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:31:23 Download gff for BS07401.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7856311..7856446 752..887 100 <- Minus
arm_3R 7856510..7856675 586..751 100 <- Minus
arm_3R 7856731..7857090 226..585 100 <- Minus
arm_3R 7857147..7857291 81..225 100 <- Minus
arm_3R 7857360..7857426 11..80 95   Minus

BS07401.complete Sequence

1457 bp (1457 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635841

> BS07401.complete
GAAGTTATCAGTCGACATGAGGGAGCGATATGCAGTCGAAACAGAGAAGC
AAGATAATGTGGAACCCACCCCGGAAGATGATAACAGCAATTATATCGTT
GAAAAAGTAGCGGTGTTCGTATCATGGATTTTAGTGTTGATTTTACTTCC
ATTTTCGCTGTGTTGTTGTCTGACTATAGCCTACGAATTCCATCGACTTG
TGATATTTCGATTGGGTCGTATTAGGAGTTGCTTAGGACCAGGTTTAGTT
TTTCTTCTTCCCTGCATCGATTCGTTTAATACGGTGGACATTCGCACCGA
TGTGGTTAATGTGGATCCGCAGGAGATGCTCACCAAGGATTCGGTGTCGA
TTACAGTGAACGCAGTGGTGTTCTACTGCATCTACGATCCCATCAACTCG
ATCATCAAGGTGGACGATGCCAGGGATGCCACCGAAAGGATCTCACAGGT
CACCCTGCGAAACATTGTTGGTTCGAAAGGACTCCACGAACTTCTGGCAT
CCAGGCAGCAACTTTCCCTGGAAATCCAGCAGGCAGTTGCAAAGATCACA
GAACGTTGGGGCGTGCGAGTGGAACGAGTGGACTTGATGGAGATATCCTT
GCCAAGTAGTCTGGAGCGATCATTGGCCAGCGAAGCGGAGGCGACAAGGG
AGGCCAGGGCCAAGATCATTTTGGCAGAAGGAGAGGCTAAAGCCTCGAAG
GCTTTAAAAGAATGCTCAGATGTTATGTCGGAAAACCAAATTACCCTACA
ACTAAGGCATCTGCAGATTCTCTGTTCCATGGCATCGGAACGTCGGGTTA
ATGTACTTTTCCCCATACCCTTGGAAATTATGGCACCTTTTATGGATGGA
AAGGATTCGTCGGATGCAGCACAAGATGATGATGACCGGAGGGATAGCGA
TGACGATTACGATTATTTACATTTATTTTCACCAAAAGTTTACATCTCGG
GTACACCACCTGATTTCTTTAATGATGCCCAAACAGATAGCACAACTGAA
AAACCCGAAGTTGGAAAAACCACTGAGAGTGTGGAAGAAAACAAACCGGC
GCGTTCGTGGCTATGGCCACCATTTTTCAGACCCTCTCGATCTGCCCAGG
ATGGTGAACAACCAACTAGCAGTCGAAGAGTTCGCCCGCAAAGTGGTCAG
CCGTCGCCTAGATCCAATCGAACCGATGATGCAATCGAACCCTATCCACT
TCTGACCAAGCCCCCAGCACGTTCGAGTTCTCCTACTAAGCCTTCATCCA
TTCCCATTCCTCCGCGTCCTGATCATCCCTCACTGCCCCCGGTGCCGCCT
CACCCGACACTTCCTCCAATTCCTCCACACCCAACTCTACCACCCATTCC
GGAACGGCCCATACCGCCTCCAAAGTCCACATCGACTCCGCCAGAAAAGG
ATCCAAAAGTATCAAAGGCCGACAAAAATTATTACTTTTAAAAGCTTTCT
AGACCAT

BS07401.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:36:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG31358-RB 1425 CG31358-PB 1..1425 17..1441 7110 99.9 Plus
CG31358-RA 1425 CG31358-PA 1..1425 17..1441 7110 99.9 Plus
CG14736-RG 1422 CG14736-PG 388..839 317..768 505 74.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG42505-RA 3446 CG42505-RA 57..1481 17..1441 7110 99.9 Plus
CG42504-RA 3446 CG42504-RA 57..1481 17..1441 7110 99.9 Plus
CG31358-RB 1979 CG31358-RB 57..1481 17..1441 7110 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:35:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12030035..12030724 1441..752 3435 99.9 Minus
3R 32079331 3R 12031008..12031370 586..224 1815 100 Minus
3R 32079331 3R 12030784..12030953 755..586 835 99.4 Minus
3R 32079331 3R 12031424..12031570 226..80 735 100 Minus
3R 32079331 3R 12031634..12031701 84..17 325 98.5 Minus
3R 32079331 3R 12041098..12041363 317..582 265 73.3 Plus
3R 32079331 3R 12041461..12041609 602..750 205 75.8 Plus
Blast to na_te.dros performed on 2014-11-26 22:36:00 has no hits.

BS07401.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:12 Download gff for BS07401.complete
Subject Subject Range Query Range Percent Splice Strand
CG31358-RA 1..1425 17..1441 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:22 Download gff for BS07401.complete
Subject Subject Range Query Range Percent Splice Strand
CG31358-RA 28..1461 11..1449 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:03:13 Download gff for BS07401.complete
Subject Subject Range Query Range Percent Splice Strand
CG31358-RB 57..1479 17..1439 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:13 Download gff for BS07401.complete
Subject Subject Range Query Range Percent Splice Strand
CG31358-RA 28..1461 11..1449 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:05:23 Download gff for BS07401.complete
Subject Subject Range Query Range Percent Splice Strand
CG31358-RB 57..1479 17..1439 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:05:23 Download gff for BS07401.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12030788..12030953 586..751 100 <- Minus
3R 12030037..12030724 752..1439 99 <- Minus
3R 12031009..12031368 226..585 100 <- Minus
3R 12031425..12031569 81..225 100 <- Minus
3R 12031638..12031701 17..80 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:03:13 Download gff for BS07401.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7856510..7856675 586..751 100 <- Minus
arm_3R 7855759..7856446 752..1439 99 <- Minus
arm_3R 7856731..7857090 226..585 100 <- Minus
arm_3R 7857147..7857291 81..225 100 <- Minus
arm_3R 7857360..7857423 17..80 100   Minus

BS07401.pep Sequence

Translation from 16 to 1440

> BS07401.pep
MRERYAVETEKQDNVEPTPEDDNSNYIVEKVAVFVSWILVLILLPFSLCC
CLTIAYEFHRLVIFRLGRIRSCLGPGLVFLLPCIDSFNTVDIRTDVVNVD
PQEMLTKDSVSITVNAVVFYCIYDPINSIIKVDDARDATERISQVTLRNI
VGSKGLHELLASRQQLSLEIQQAVAKITERWGVRVERVDLMEISLPSSLE
RSLASEAEATREARAKIILAEGEAKASKALKECSDVMSENQITLQLRHLQ
ILCSMASERRVNVLFPIPLEIMAPFMDGKDSSDAAQDDDDRRDSDDDYDY
LHLFSPKVYISGTPPDFFNDAQTDSTTEKPEVGKTTESVEENKPARSWLW
PPFFRPSRSAQDGEQPTSSRRVRPQSGQPSPRSNRTDDAIEPYPLLTKPP
ARSSSPTKPSSIPIPPRPDHPSLPPVPPHPTLPPIPPHPTLPPIPERPIP
PPKSTSTPPEKDPKVSKADKNYYF*

BS07401.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG31358-PB 474 CG31358-PB 1..474 1..474 2476 100 Plus
CG31358-PA 474 CG31358-PA 1..474 1..474 2476 100 Plus
CG14736-PD 455 CG14736-PD 49..309 21..280 960 73.6 Plus
CG14736-PG 473 CG14736-PG 49..309 21..280 960 73.6 Plus
CG14736-PE 473 CG14736-PE 49..309 21..280 960 73.6 Plus