Clone Sequence Records
BS07401.3prime Sequence
952 bp (785 high quality bases) assembled on 2006-01-06
> BS07401.3prime
ATGGTCTAGAAAGCTTTTAAAAGTAATAATTTTTGTCGGCCTTTGATACT
TTTGGATCCTTTTCTGGCGGAGTCGATGTGGACTTTGGAGGCGGTATGGG
CCGTTCCGGAATGGGTGGTAGAGTTGGGTGTGGAGGAATTGGAGGAAGTG
TCGGGTGAGGCGGCACCGGGGGCAGTGAGGGATGATCAGGACGCGGAGGA
ATGGGAATGGATGAAGGCTTAGTAGGAGAACTCGAACGTGCTGGGGGCTT
GGTCAGAAGTGGATAGGGTTCGATTGCATCATCGGTTCGATTGGATCTAG
GCGACGGCTGACCACTTTGCGGGCGAACTCTTCGACTGCTAGTTGGTTGT
TCACCATCCTGGGCAGATCGAGAGGGTCTGAAAAATGGTGGCCATAGCCA
CGAACGCGCCGGTTTGTTTTCTTCCACACTCTCAGTGGTTTTTCCAACTT
CGGGTTTTTCAGTTGTGCTATCTGTTTGGGCATCATTAAAGAAATCAGGT
GGTGTACCCGAGATGTAAACTTTTGGTGAAAATAAATGTAAATAATCGTA
ATCGTCATCGCTATCCCTCCGGTCATCATCATCTTGTGCTGCATCCGACG
AATCCTTTCCATCCATAAAAGGTGCCATAATTTCCAAGGGTATGGGGAAA
AGTACATTAACCCGACGTTCCGATGCCATGGAACAGAGAATCTGCAGATG
CCTTAGTTGTAGGGTAATTTGGTTTTCCGACATAACATCTGAGCATTCTT
TTAAAGCCTTCGAGGCTTTAGCCTCTCCTTCTGCCAAAATGATCTTGGCC
CTGGCCTCCCTTGTCGCCTCCGCTTCGCTGGCCCATGATCGCTCCAGACT
ACTTGGCAAGGATATCTCCATCAAGTCCACTCGTTCCACTCGCACGCCCC
AACGTTCTGTGATCTTTGCAACTGCCTGCTGGATTTCCAGGGAAAGTTGC
TG
BS07401.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31358-PA | 1425 | CG31358-RA | 490..1425 | 952..17 | 4630 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:13:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42505-RA | 3446 | CG42505-RA | 546..1481 | 952..17 | 4650 | 99.8 | Minus |
CG42504-RA | 3446 | CG42504-RA | 546..1481 | 952..17 | 4650 | 99.8 | Minus |
CG31358-RB | 1979 | CG31358-RB | 546..1481 | 952..17 | 4650 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:13:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12030035..12030724 | 17..706 | 3435 | 99.9 | Plus |
3R | 32079331 | 3R | 12030784..12030953 | 703..872 | 820 | 98.8 | Plus |
3R | 32079331 | 3R | 12031008..12031088 | 872..952 | 405 | 100 | Plus |
Blast to na_te.dros performed 2015-01-30 14:13:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy7 | 5486 | gypsy7 GYPSY7 5486bp | 1750..1789 | 109..148 | 110 | 75 | Plus |
BS07401.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:42 Download gff for
BS07401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31358-PA | 490..1425 | 17..952 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:28 Download gff for
BS07401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31358-PA | 490..1425 | 17..952 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:00:56 Download gff for
BS07401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31358-RB | 546..1487 | 9..952 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:32:49 Download gff for
BS07401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31358-RB | 546..1487 | 9..952 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:32:49 Download gff for
BS07401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12030029..12030724 | 9..706 | 99 | <- | Plus |
3R | 12030788..12030953 | 707..872 | 99 | <- | Plus |
3R | 12031009..12031088 | 873..952 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:00:56 Download gff for
BS07401.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7855751..7856446 | 9..706 | 99 | <- | Plus |
arm_3R | 7856510..7856675 | 707..872 | 99 | <- | Plus |
arm_3R | 7856731..7856810 | 873..952 | 100 | | Plus |
BS07401.5prime Sequence
887 bp (753 high quality bases) assembled on 2006-01-06
> BS07401.5prime
GAAGTTATCAGTCGACATGAGGGAGCGATATGCAGTCGAAACAGAGAAGC
AAGATAATGTGGAACCCACCCCGGAAGATGATAACAGCAATTATATCGTT
GAAAAAGTAGCGGTGTTCGTATCATGGATTTTAGTGTTGATTTTACTTCC
ATTTTCGCTGTGTTGTTGTCTGACTATAGCCTACGAATTCCATCGACTTG
TGATATTTCGATTGGGTCGTATTAGGAGTTGCTTAGGACCAGGTTTAGTT
TTTCTTCTTCCCTGCATCGATTCGTTTAATACGGTGGACATTCGCACCGA
TGTGGTTAATGTGGATCCGCAGGAGATGCTCACCAAGGATTCGGTGTCGA
TTACAGTGAACGCAGTGGTGTTCTACTGCATCTACGATCCCATCAACTCG
ATCATCAAGGTGGACGATGCCAGGGATGCCACCGAAAGGATCTCACAGGT
CACCCTGCGAAACATTGTTGGTTCGAAAGGACTCCACGAACTTCTGGCAT
CCAGGCAGCAACTTTCCCTGGAAATCCAGCAGGCAGTTGCAAAGATCACA
GAACGTTGGGGCGTGCGAGTGGAACGAGTGGACTTGATGGAGATATCCTT
GCCAAGTAGTCTGGAGCGATCATTGGCCAGCGAAGCGGAGGCGACAAGGG
AGGCCAGGGCCAAGATCATTTTGGCAGAAGGAGAGGCTAAAGCCTCGAAG
GCTTTAAAAGAATGCTCAGATGTTATGTCGGAAAACCAAATTACCCTACA
ACTAAGGCATCTGCAGATTCTCTGTTCCATGGCATCGGAACGTCGGGTTA
ATGTACTTTTCCCCATACCCTTGGAAATTATGGCACCTTTTATGGATGGA
AAGGATTCGTCGGATGCAGCACAAGATGATGATGACC
BS07401.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31358-PA | 1425 | CG31358-RA | 1..871 | 17..887 | 4355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:15:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42505-RA | 3446 | CG42505-RA | 57..927 | 17..887 | 4355 | 100 | Plus |
CG42504-RA | 3446 | CG42504-RA | 57..927 | 17..887 | 4355 | 100 | Plus |
CG31358-RB | 1979 | CG31358-RB | 57..927 | 17..887 | 4355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:15:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12031008..12031370 | 586..224 | 1815 | 100 | Minus |
3R | 32079331 | 3R | 12030784..12030953 | 755..586 | 835 | 99.4 | Minus |
3R | 32079331 | 3R | 12031424..12031570 | 226..80 | 735 | 100 | Minus |
3R | 32079331 | 3R | 12030589..12030724 | 887..752 | 680 | 100 | Minus |
3R | 32079331 | 3R | 12031634..12031701 | 84..17 | 325 | 98.5 | Minus |
3R | 32079331 | 3R | 12041098..12041363 | 317..582 | 265 | 73.3 | Plus |
3R | 32079331 | 3R | 12041461..12041609 | 602..750 | 205 | 75.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:15:36 has no hits.
BS07401.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:43 Download gff for
BS07401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31358-PA | 1..871 | 17..887 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:29 Download gff for
BS07401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31358-PA | 1..871 | 17..887 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:31:23 Download gff for
BS07401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31358-RB | 54..927 | 11..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:39:03 Download gff for
BS07401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31358-RB | 54..927 | 11..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:39:03 Download gff for
BS07401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12031425..12031569 | 81..225 | 100 | <- | Minus |
3R | 12031638..12031704 | 11..80 | 95 | | Minus |
3R | 12030589..12030724 | 752..887 | 100 | <- | Minus |
3R | 12030788..12030953 | 586..751 | 100 | <- | Minus |
3R | 12031009..12031368 | 226..585 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:31:23 Download gff for
BS07401.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7856311..7856446 | 752..887 | 100 | <- | Minus |
arm_3R | 7856510..7856675 | 586..751 | 100 | <- | Minus |
arm_3R | 7856731..7857090 | 226..585 | 100 | <- | Minus |
arm_3R | 7857147..7857291 | 81..225 | 100 | <- | Minus |
arm_3R | 7857360..7857426 | 11..80 | 95 | | Minus |
BS07401.complete Sequence
1457 bp (1457 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635841
> BS07401.complete
GAAGTTATCAGTCGACATGAGGGAGCGATATGCAGTCGAAACAGAGAAGC
AAGATAATGTGGAACCCACCCCGGAAGATGATAACAGCAATTATATCGTT
GAAAAAGTAGCGGTGTTCGTATCATGGATTTTAGTGTTGATTTTACTTCC
ATTTTCGCTGTGTTGTTGTCTGACTATAGCCTACGAATTCCATCGACTTG
TGATATTTCGATTGGGTCGTATTAGGAGTTGCTTAGGACCAGGTTTAGTT
TTTCTTCTTCCCTGCATCGATTCGTTTAATACGGTGGACATTCGCACCGA
TGTGGTTAATGTGGATCCGCAGGAGATGCTCACCAAGGATTCGGTGTCGA
TTACAGTGAACGCAGTGGTGTTCTACTGCATCTACGATCCCATCAACTCG
ATCATCAAGGTGGACGATGCCAGGGATGCCACCGAAAGGATCTCACAGGT
CACCCTGCGAAACATTGTTGGTTCGAAAGGACTCCACGAACTTCTGGCAT
CCAGGCAGCAACTTTCCCTGGAAATCCAGCAGGCAGTTGCAAAGATCACA
GAACGTTGGGGCGTGCGAGTGGAACGAGTGGACTTGATGGAGATATCCTT
GCCAAGTAGTCTGGAGCGATCATTGGCCAGCGAAGCGGAGGCGACAAGGG
AGGCCAGGGCCAAGATCATTTTGGCAGAAGGAGAGGCTAAAGCCTCGAAG
GCTTTAAAAGAATGCTCAGATGTTATGTCGGAAAACCAAATTACCCTACA
ACTAAGGCATCTGCAGATTCTCTGTTCCATGGCATCGGAACGTCGGGTTA
ATGTACTTTTCCCCATACCCTTGGAAATTATGGCACCTTTTATGGATGGA
AAGGATTCGTCGGATGCAGCACAAGATGATGATGACCGGAGGGATAGCGA
TGACGATTACGATTATTTACATTTATTTTCACCAAAAGTTTACATCTCGG
GTACACCACCTGATTTCTTTAATGATGCCCAAACAGATAGCACAACTGAA
AAACCCGAAGTTGGAAAAACCACTGAGAGTGTGGAAGAAAACAAACCGGC
GCGTTCGTGGCTATGGCCACCATTTTTCAGACCCTCTCGATCTGCCCAGG
ATGGTGAACAACCAACTAGCAGTCGAAGAGTTCGCCCGCAAAGTGGTCAG
CCGTCGCCTAGATCCAATCGAACCGATGATGCAATCGAACCCTATCCACT
TCTGACCAAGCCCCCAGCACGTTCGAGTTCTCCTACTAAGCCTTCATCCA
TTCCCATTCCTCCGCGTCCTGATCATCCCTCACTGCCCCCGGTGCCGCCT
CACCCGACACTTCCTCCAATTCCTCCACACCCAACTCTACCACCCATTCC
GGAACGGCCCATACCGCCTCCAAAGTCCACATCGACTCCGCCAGAAAAGG
ATCCAAAAGTATCAAAGGCCGACAAAAATTATTACTTTTAAAAGCTTTCT
AGACCAT
BS07401.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:36:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31358-RB | 1425 | CG31358-PB | 1..1425 | 17..1441 | 7110 | 99.9 | Plus |
CG31358-RA | 1425 | CG31358-PA | 1..1425 | 17..1441 | 7110 | 99.9 | Plus |
CG14736-RG | 1422 | CG14736-PG | 388..839 | 317..768 | 505 | 74.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:36:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42505-RA | 3446 | CG42505-RA | 57..1481 | 17..1441 | 7110 | 99.9 | Plus |
CG42504-RA | 3446 | CG42504-RA | 57..1481 | 17..1441 | 7110 | 99.9 | Plus |
CG31358-RB | 1979 | CG31358-RB | 57..1481 | 17..1441 | 7110 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:35:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12030035..12030724 | 1441..752 | 3435 | 99.9 | Minus |
3R | 32079331 | 3R | 12031008..12031370 | 586..224 | 1815 | 100 | Minus |
3R | 32079331 | 3R | 12030784..12030953 | 755..586 | 835 | 99.4 | Minus |
3R | 32079331 | 3R | 12031424..12031570 | 226..80 | 735 | 100 | Minus |
3R | 32079331 | 3R | 12031634..12031701 | 84..17 | 325 | 98.5 | Minus |
3R | 32079331 | 3R | 12041098..12041363 | 317..582 | 265 | 73.3 | Plus |
3R | 32079331 | 3R | 12041461..12041609 | 602..750 | 205 | 75.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:36:00 has no hits.
BS07401.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:12 Download gff for
BS07401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31358-RA | 1..1425 | 17..1441 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:22 Download gff for
BS07401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31358-RA | 28..1461 | 11..1449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:03:13 Download gff for
BS07401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31358-RB | 57..1479 | 17..1439 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:13 Download gff for
BS07401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31358-RA | 28..1461 | 11..1449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:05:23 Download gff for
BS07401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31358-RB | 57..1479 | 17..1439 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:05:23 Download gff for
BS07401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12030788..12030953 | 586..751 | 100 | <- | Minus |
3R | 12030037..12030724 | 752..1439 | 99 | <- | Minus |
3R | 12031009..12031368 | 226..585 | 100 | <- | Minus |
3R | 12031425..12031569 | 81..225 | 100 | <- | Minus |
3R | 12031638..12031701 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:03:13 Download gff for
BS07401.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7856510..7856675 | 586..751 | 100 | <- | Minus |
arm_3R | 7855759..7856446 | 752..1439 | 99 | <- | Minus |
arm_3R | 7856731..7857090 | 226..585 | 100 | <- | Minus |
arm_3R | 7857147..7857291 | 81..225 | 100 | <- | Minus |
arm_3R | 7857360..7857423 | 17..80 | 100 | | Minus |
BS07401.pep Sequence
Translation from 16 to 1440
> BS07401.pep
MRERYAVETEKQDNVEPTPEDDNSNYIVEKVAVFVSWILVLILLPFSLCC
CLTIAYEFHRLVIFRLGRIRSCLGPGLVFLLPCIDSFNTVDIRTDVVNVD
PQEMLTKDSVSITVNAVVFYCIYDPINSIIKVDDARDATERISQVTLRNI
VGSKGLHELLASRQQLSLEIQQAVAKITERWGVRVERVDLMEISLPSSLE
RSLASEAEATREARAKIILAEGEAKASKALKECSDVMSENQITLQLRHLQ
ILCSMASERRVNVLFPIPLEIMAPFMDGKDSSDAAQDDDDRRDSDDDYDY
LHLFSPKVYISGTPPDFFNDAQTDSTTEKPEVGKTTESVEENKPARSWLW
PPFFRPSRSAQDGEQPTSSRRVRPQSGQPSPRSNRTDDAIEPYPLLTKPP
ARSSSPTKPSSIPIPPRPDHPSLPPVPPHPTLPPIPPHPTLPPIPERPIP
PPKSTSTPPEKDPKVSKADKNYYF*
BS07401.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31358-PB | 474 | CG31358-PB | 1..474 | 1..474 | 2476 | 100 | Plus |
CG31358-PA | 474 | CG31358-PA | 1..474 | 1..474 | 2476 | 100 | Plus |
CG14736-PD | 455 | CG14736-PD | 49..309 | 21..280 | 960 | 73.6 | Plus |
CG14736-PG | 473 | CG14736-PG | 49..309 | 21..280 | 960 | 73.6 | Plus |
CG14736-PE | 473 | CG14736-PE | 49..309 | 21..280 | 960 | 73.6 | Plus |