Clone BS07403 Report

Search the DGRC for BS07403

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptCG5150-RA
Protein status:BS07403.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07403.3prime Sequence

896 bp (803 high quality bases) assembled on 2006-01-06

> BS07403.3prime
ATGGTCTAGAAAGCTTCTAATCGCAAGCGGTTAGTCCATCGCCCACACAG
GCAGCGAATGCCATCATGTGAGGAATGGTGTTCTGTTCGTAGACGCCAGT
GAAGAGATGTGCCCAGGGTCCCGAGGCGAAGACACCCACATCCTCGCCGC
CATGGGTCTCCGATTCAAGGGGCACCATCGCGGGGAAGAGCTGATCGAAG
TCTCCGATTGTGGGCAGACTGGTGGGATCCACGCGCTCGTGGGTCTCCGT
ATTGTAGTAGTCCTGGAAACTCTTGCCGTTGGCATAGCTCAAGGCCAGAT
ACGGTTTGCCATCCTTGCCATTCGCCTTGGCAGCTCCAAAGATGTCGCTT
CCTCGTGGTTGATATCCCGAAACGCTGAAGGTGTGCGAGTGATCCGAGGT
CACCACAATGAGGGTCTCCTCCGGGTTGGTCATCTCCCTAGCCTTCTTCA
CCGCCTTCGAGAGTTCAGCGGTCTCATCCAAAGCAATTCGTGCCATTGTT
TCGTGGTGGCTGATGTCGATTTTACCTCCTTCAACGAAAAGGAAGTATCC
CTGCTCTTCGGTTTCCAGCACTTCAATGGCCTTCTGTGTCATCTCCTCCA
AGGTGGGCTCATTGTTGTCCGGATCGGCCAGTTGCTCCAGATGATAGTGC
ATGTGGCTCTTGCTGAACAGGCCCAACAATCTACCGGTTTCAGTGGCGTT
CACATTGAGCAGCTTCTTCTGCGTTTTCACAAAGGTGTTGCCCGCGTCCA
AGGCTTCGAATTCCTCGACGAGATTACGACCATCAGTGCGCCGGCCCTTG
TCGTAGTGTTCCGGACTATAGAAGCTTCGCTTGCCTCCACCCAGCATGAC
CTTGAGTTTGCTGCCCACCTCGCCGTGAATCAACTGGACAGCTATG

BS07403.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5150-PA 1554 CG5150-RA 675..1554 896..17 4400 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5150-RB 1881 CG5150-RB 719..1598 896..17 4400 100 Minus
CG5150-RA 1796 CG5150-RA 719..1598 896..17 4400 100 Minus
CG10827-RA 1674 CG10827-RA 1454..1563 148..39 220 80 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5596260..5597139 896..17 4400 100 Minus
3R 32079331 3R 21005271..21005380 39..148 220 80 Plus
3L 28110227 3L 5593288..5593351 380..443 185 85.9 Plus
Blast to na_te.dros performed on 2015-02-11 09:59:55 has no hits.

BS07403.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:45 Download gff for BS07403.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5150-PA 675..1554 17..896 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:32 Download gff for BS07403.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5150-PA 675..1554 17..896 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:00:46 Download gff for BS07403.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5150-RA 719..1598 17..896 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:16:28 Download gff for BS07403.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5150-RA 719..1598 17..896 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:16:28 Download gff for BS07403.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5596260..5597139 17..896 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:00:46 Download gff for BS07403.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5589360..5590239 17..896 100   Minus

BS07403.5prime Sequence

867 bp (730 high quality bases) assembled on 2006-01-06

> BS07403.5prime
GAAGTTATCAGTCGACATGCTGAGTCTTAAGTTCTGGATTCGCCTCGGTC
TGCTGACCGTCGTTTGGGGTGCAGCGGTTCCTGGAAGAGCCCCCGTGGAC
GAGGAGCGAATGCATCCACATCTGCCCACTAGTCCCAGGCTGCGTACGAT
TTCCGGCGAGGAAACCCAGGAGTTCTGGCACTCGGCCAGCAAAAAACTCA
TCCGCGAAAAGTTGGAGTTCGTGAGGAACACCAAGAAGGCCAAGAACATT
ATACTGTTTTTGGGCGATGGCATGGGACTGGCTACTCTGGCTGCTGCCAG
GAGTTACATTGGAGGCGAGGAGTTGAAGCTCTCCTTCGAAGAATTCCCCT
TTACCGGACTATCGAAAACCTATTCGGTGGACAAAATAGTCCCCGATAGC
GCCTGTACCTCAACCTCATATCTCTGCGGAGTGAAGGCGAACTACGGAAC
CATCGGCGTAAATGCGCATGTGAAGCGAGGCGACTGTGCGGCGATGGCCA
ATGAAACGAACCATGTCTTCTCCCTGGGTAAATGGGCCATGGATGCGGGC
AAAGCTGCTGGACTAGTGACCACCACCCGAGTGACCCACGCCTCGCCATC
CGGAGTCTACGCCCATGTCGCCGATCGTGAATGGGAGAATAACGCTGTTC
TCGAGGAGGCCTGCGGTGAGTTGTCAGATGGACTCCAGGACATAGCTGTC
CAGTTGATTCACGGCGAGGTGGGCAGCAAACTCAAGGTCATGCTGGGTGG
AGGCAAGCGAAGCTTCTATAGTCCGGAACACTACGACAAGGGCCGGCGCA
CTGATGGTCGTAATCTCGTCGAGGAATTCGAAGCCTTGGACGCGGGCAAC
ACCTTTGTGAAAACGCA

BS07403.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5150-PA 1554 CG5150-RA 1..851 17..867 4255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG5150-RB 1881 CG5150-RB 45..895 17..867 4255 100 Plus
CG5150-RA 1796 CG5150-RA 45..895 17..867 4255 100 Plus
CG10827-RA 1674 CG10827-RA 560..666 533..639 220 80.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5595586..5596436 17..867 4255 100 Plus
3R 32079331 3R 21006325..21006431 639..533 220 80.4 Minus
Blast to na_te.dros performed on 2015-02-10 04:09:38 has no hits.

BS07403.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:46 Download gff for BS07403.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5150-PA 1..850 17..866 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:33 Download gff for BS07403.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5150-PA 1..850 17..866 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:47:15 Download gff for BS07403.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5150-RA 35..894 6..866 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:21:56 Download gff for BS07403.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5150-RA 35..894 6..866 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:21:56 Download gff for BS07403.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5595576..5596435 6..866 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:47:15 Download gff for BS07403.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5588676..5589535 6..866 99   Plus

BS07403.complete Sequence

1586 bp (1586 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635842

> BS07403.complete
GAAGTTATCAGTCGACATGCTGAGTCTTAAGTTCTGGATTCGCCTCGGTC
TGCTGACCGTCGTTTGGGGTGCAGCGGTTCCTGGAAGAGCCCCCGTGGAC
GAGGAGCGAATGCATCCACATCTGCCCACTAGTCCCAGGCTGCGTACGAT
TTCCGGCGAGGAAACCCAGGAGTTCTGGCACTCGGCCAGCAAAAAACTCA
TCCGCGAAAAGTTGGAGTTCGTGAGGAACACCAAGAAGGCCAAGAACATT
ATACTGTTTTTGGGCGATGGCATGGGACTGGCTACTCTGGCTGCTGCCAG
GAGTTACATTGGAGGCGAGGAGTTGAAGCTCTCCTTCGAAGAATTCCCCT
TTACCGGACTATCGAAAACCTATTCGGTGGACAAAATAGTCCCCGATAGC
GCCTGTACCTCAACCTCATATCTCTGCGGAGTGAAGGCGAACTACGGAAC
CATCGGCGTAAATGCGCATGTGAAGCGAGGCGACTGTGCGGCGATGGCCA
ATGAAACGAACCATGTCTTCTCCCTGGGTAAATGGGCCATGGATGCGGGC
AAAGCTGCTGGACTAGTGACCACCACCCGAGTGACCCACGCCTCGCCATC
CGGAGTCTACGCCCATGTCGCCGATCGTGAATGGGAGAATAACGCTGTTC
TCGAGGAGGCCTGCGGTGAGTTGTCAGATGGACTCCAGGACATAGCTGTC
CAGTTGATTCACGGCGAGGTGGGCAGCAAACTCAAGGTCATGCTGGGTGG
AGGCAAGCGAAGCTTCTATAGTCCGGAACACTACGACAAGGGCCGGCGCA
CTGATGGTCGTAATCTCGTCGAGGAATTCGAAGCCTTGGACGCGGGCAAC
ACCTTTGTGAAAACGCAGAAGAAGCTGCTCAATGTGAACGCCACTGAAAC
CGGTAGATTGTTGGGCCTGTTCAGCAAGAGCCACATGCACTATCATCTGG
AGCAACTGGCCGATCCGGACAACAATGAGCCCACCTTGGAGGAGATGACA
CAGAAGGCCATTGAAGTGCTGGAAACCGAAGAGCAGGGATACTTCCTTTT
CGTTGAAGGAGGTAAAATCGACATCAGCCACCACGAAACAATGGCACGAA
TTGCTTTGGATGAGACCGCTGAACTCTCGAAGGCGGTGAAGAAGGCTAGG
GAGATGACCAACCCGGAGGAGACCCTCATTGTGGTGACCTCGGATCACTC
GCACACCTTCAGCGTTTCGGGATATCAACCACGAGGAAGCGACATCTTTG
GAGCTGCCAAGGCGAATGGCAAGGATGGCAAACCGTATCTGGCCTTGAGC
TATGCCAACGGCAAGAGTTTCCAGGACTACTACAATACGGAGACCCACGA
GCGCGTGGATCCCACCAGTCTGCCCACAATCGGAGACTTCGATCAGCTCT
TCCCCGCGATGGTGCCCCTTGAATCGGAGACCCATGGCGGCGAGGATGTG
GGTGTCTTCGCCTCGGGACCCTGGGCACATCTCTTCACTGGCGTCTACGA
ACAGAACACCATTCCTCACATGATGGCATTCGCTGCCTGTGTGGGCGATG
GACTAACCGCTTGCGATTAGAAGCTTTCTAGACCAT

BS07403.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5150-RB 1554 CG5150-PB 1..1554 17..1570 7770 100 Plus
CG5150-RA 1554 CG5150-PA 1..1554 17..1570 7770 100 Plus
CG10827-RA 1569 CG10827-PA 544..650 533..639 220 80.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5150-RB 1881 CG5150-RB 45..1598 17..1570 7770 100 Plus
CG5150-RA 1796 CG5150-RA 45..1598 17..1570 7770 100 Plus
CG10827-RA 1674 CG10827-RA 560..666 533..639 220 80.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5595586..5597139 17..1570 7770 100 Plus
3R 32079331 3R 21005271..21005380 1548..1439 220 80 Minus
3R 32079331 3R 21006325..21006431 639..533 220 80.4 Minus
3L 28110227 3L 5593288..5593351 1207..1144 185 85.9 Minus
Blast to na_te.dros performed on 2014-11-27 16:40:05 has no hits.

BS07403.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:14 Download gff for BS07403.complete
Subject Subject Range Query Range Percent Splice Strand
CG5150-RA 1..1554 17..1570 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:24 Download gff for BS07403.complete
Subject Subject Range Query Range Percent Splice Strand
CG5150-RA 31..1594 6..1570 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:48 Download gff for BS07403.complete
Subject Subject Range Query Range Percent Splice Strand
CG5150-RA 45..1598 17..1570 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:14 Download gff for BS07403.complete
Subject Subject Range Query Range Percent Splice Strand
CG5150-RA 31..1594 6..1570 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:51 Download gff for BS07403.complete
Subject Subject Range Query Range Percent Splice Strand
CG5150-RA 45..1598 17..1570 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:51 Download gff for BS07403.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5595586..5597139 17..1570 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:48 Download gff for BS07403.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5588686..5590239 17..1570 100   Plus

BS07403.pep Sequence

Translation from 16 to 1569

> BS07403.pep
MLSLKFWIRLGLLTVVWGAAVPGRAPVDEERMHPHLPTSPRLRTISGEET
QEFWHSASKKLIREKLEFVRNTKKAKNIILFLGDGMGLATLAAARSYIGG
EELKLSFEEFPFTGLSKTYSVDKIVPDSACTSTSYLCGVKANYGTIGVNA
HVKRGDCAAMANETNHVFSLGKWAMDAGKAAGLVTTTRVTHASPSGVYAH
VADREWENNAVLEEACGELSDGLQDIAVQLIHGEVGSKLKVMLGGGKRSF
YSPEHYDKGRRTDGRNLVEEFEALDAGNTFVKTQKKLLNVNATETGRLLG
LFSKSHMHYHLEQLADPDNNEPTLEEMTQKAIEVLETEEQGYFLFVEGGK
IDISHHETMARIALDETAELSKAVKKAREMTNPEETLIVVTSDHSHTFSV
SGYQPRGSDIFGAAKANGKDGKPYLALSYANGKSFQDYYNTETHERVDPT
SLPTIGDFDQLFPAMVPLESETHGGEDVGVFASGPWAHLFTGVYEQNTIP
HMMAFAACVGDGLTACD*

BS07403.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG5150-PB 517 CG5150-PB 1..517 1..517 2710 100 Plus
CG5150-PA 517 CG5150-PA 1..517 1..517 2710 100 Plus
CG10827-PA 522 CG10827-PA 20..521 17..516 1516 56.3 Plus
CG10592-PA 524 CG10592-PA 27..514 29..510 1124 48.1 Plus
CG8147-PA 546 CG8147-PA 61..532 46..511 1118 50 Plus