Clone Sequence Records
BS07403.3prime Sequence
896 bp (803 high quality bases) assembled on 2006-01-06
> BS07403.3prime
ATGGTCTAGAAAGCTTCTAATCGCAAGCGGTTAGTCCATCGCCCACACAG
GCAGCGAATGCCATCATGTGAGGAATGGTGTTCTGTTCGTAGACGCCAGT
GAAGAGATGTGCCCAGGGTCCCGAGGCGAAGACACCCACATCCTCGCCGC
CATGGGTCTCCGATTCAAGGGGCACCATCGCGGGGAAGAGCTGATCGAAG
TCTCCGATTGTGGGCAGACTGGTGGGATCCACGCGCTCGTGGGTCTCCGT
ATTGTAGTAGTCCTGGAAACTCTTGCCGTTGGCATAGCTCAAGGCCAGAT
ACGGTTTGCCATCCTTGCCATTCGCCTTGGCAGCTCCAAAGATGTCGCTT
CCTCGTGGTTGATATCCCGAAACGCTGAAGGTGTGCGAGTGATCCGAGGT
CACCACAATGAGGGTCTCCTCCGGGTTGGTCATCTCCCTAGCCTTCTTCA
CCGCCTTCGAGAGTTCAGCGGTCTCATCCAAAGCAATTCGTGCCATTGTT
TCGTGGTGGCTGATGTCGATTTTACCTCCTTCAACGAAAAGGAAGTATCC
CTGCTCTTCGGTTTCCAGCACTTCAATGGCCTTCTGTGTCATCTCCTCCA
AGGTGGGCTCATTGTTGTCCGGATCGGCCAGTTGCTCCAGATGATAGTGC
ATGTGGCTCTTGCTGAACAGGCCCAACAATCTACCGGTTTCAGTGGCGTT
CACATTGAGCAGCTTCTTCTGCGTTTTCACAAAGGTGTTGCCCGCGTCCA
AGGCTTCGAATTCCTCGACGAGATTACGACCATCAGTGCGCCGGCCCTTG
TCGTAGTGTTCCGGACTATAGAAGCTTCGCTTGCCTCCACCCAGCATGAC
CTTGAGTTTGCTGCCCACCTCGCCGTGAATCAACTGGACAGCTATG
BS07403.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5150-PA | 1554 | CG5150-RA | 675..1554 | 896..17 | 4400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:59:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5150-RB | 1881 | CG5150-RB | 719..1598 | 896..17 | 4400 | 100 | Minus |
CG5150-RA | 1796 | CG5150-RA | 719..1598 | 896..17 | 4400 | 100 | Minus |
CG10827-RA | 1674 | CG10827-RA | 1454..1563 | 148..39 | 220 | 80 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:59:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5596260..5597139 | 896..17 | 4400 | 100 | Minus |
3R | 32079331 | 3R | 21005271..21005380 | 39..148 | 220 | 80 | Plus |
3L | 28110227 | 3L | 5593288..5593351 | 380..443 | 185 | 85.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:59:55 has no hits.
BS07403.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:45 Download gff for
BS07403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5150-PA | 675..1554 | 17..896 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:32 Download gff for
BS07403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5150-PA | 675..1554 | 17..896 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:00:46 Download gff for
BS07403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5150-RA | 719..1598 | 17..896 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:16:28 Download gff for
BS07403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5150-RA | 719..1598 | 17..896 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:16:28 Download gff for
BS07403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5596260..5597139 | 17..896 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:00:46 Download gff for
BS07403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5589360..5590239 | 17..896 | 100 | | Minus |
BS07403.5prime Sequence
867 bp (730 high quality bases) assembled on 2006-01-06
> BS07403.5prime
GAAGTTATCAGTCGACATGCTGAGTCTTAAGTTCTGGATTCGCCTCGGTC
TGCTGACCGTCGTTTGGGGTGCAGCGGTTCCTGGAAGAGCCCCCGTGGAC
GAGGAGCGAATGCATCCACATCTGCCCACTAGTCCCAGGCTGCGTACGAT
TTCCGGCGAGGAAACCCAGGAGTTCTGGCACTCGGCCAGCAAAAAACTCA
TCCGCGAAAAGTTGGAGTTCGTGAGGAACACCAAGAAGGCCAAGAACATT
ATACTGTTTTTGGGCGATGGCATGGGACTGGCTACTCTGGCTGCTGCCAG
GAGTTACATTGGAGGCGAGGAGTTGAAGCTCTCCTTCGAAGAATTCCCCT
TTACCGGACTATCGAAAACCTATTCGGTGGACAAAATAGTCCCCGATAGC
GCCTGTACCTCAACCTCATATCTCTGCGGAGTGAAGGCGAACTACGGAAC
CATCGGCGTAAATGCGCATGTGAAGCGAGGCGACTGTGCGGCGATGGCCA
ATGAAACGAACCATGTCTTCTCCCTGGGTAAATGGGCCATGGATGCGGGC
AAAGCTGCTGGACTAGTGACCACCACCCGAGTGACCCACGCCTCGCCATC
CGGAGTCTACGCCCATGTCGCCGATCGTGAATGGGAGAATAACGCTGTTC
TCGAGGAGGCCTGCGGTGAGTTGTCAGATGGACTCCAGGACATAGCTGTC
CAGTTGATTCACGGCGAGGTGGGCAGCAAACTCAAGGTCATGCTGGGTGG
AGGCAAGCGAAGCTTCTATAGTCCGGAACACTACGACAAGGGCCGGCGCA
CTGATGGTCGTAATCTCGTCGAGGAATTCGAAGCCTTGGACGCGGGCAAC
ACCTTTGTGAAAACGCA
BS07403.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5150-PA | 1554 | CG5150-RA | 1..851 | 17..867 | 4255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:09:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5150-RB | 1881 | CG5150-RB | 45..895 | 17..867 | 4255 | 100 | Plus |
CG5150-RA | 1796 | CG5150-RA | 45..895 | 17..867 | 4255 | 100 | Plus |
CG10827-RA | 1674 | CG10827-RA | 560..666 | 533..639 | 220 | 80.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:09:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5595586..5596436 | 17..867 | 4255 | 100 | Plus |
3R | 32079331 | 3R | 21006325..21006431 | 639..533 | 220 | 80.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 04:09:38 has no hits.
BS07403.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:46 Download gff for
BS07403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5150-PA | 1..850 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:33 Download gff for
BS07403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5150-PA | 1..850 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:47:15 Download gff for
BS07403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5150-RA | 35..894 | 6..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:21:56 Download gff for
BS07403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5150-RA | 35..894 | 6..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:21:56 Download gff for
BS07403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5595576..5596435 | 6..866 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:47:15 Download gff for
BS07403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5588676..5589535 | 6..866 | 99 | | Plus |
BS07403.complete Sequence
1586 bp (1586 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635842
> BS07403.complete
GAAGTTATCAGTCGACATGCTGAGTCTTAAGTTCTGGATTCGCCTCGGTC
TGCTGACCGTCGTTTGGGGTGCAGCGGTTCCTGGAAGAGCCCCCGTGGAC
GAGGAGCGAATGCATCCACATCTGCCCACTAGTCCCAGGCTGCGTACGAT
TTCCGGCGAGGAAACCCAGGAGTTCTGGCACTCGGCCAGCAAAAAACTCA
TCCGCGAAAAGTTGGAGTTCGTGAGGAACACCAAGAAGGCCAAGAACATT
ATACTGTTTTTGGGCGATGGCATGGGACTGGCTACTCTGGCTGCTGCCAG
GAGTTACATTGGAGGCGAGGAGTTGAAGCTCTCCTTCGAAGAATTCCCCT
TTACCGGACTATCGAAAACCTATTCGGTGGACAAAATAGTCCCCGATAGC
GCCTGTACCTCAACCTCATATCTCTGCGGAGTGAAGGCGAACTACGGAAC
CATCGGCGTAAATGCGCATGTGAAGCGAGGCGACTGTGCGGCGATGGCCA
ATGAAACGAACCATGTCTTCTCCCTGGGTAAATGGGCCATGGATGCGGGC
AAAGCTGCTGGACTAGTGACCACCACCCGAGTGACCCACGCCTCGCCATC
CGGAGTCTACGCCCATGTCGCCGATCGTGAATGGGAGAATAACGCTGTTC
TCGAGGAGGCCTGCGGTGAGTTGTCAGATGGACTCCAGGACATAGCTGTC
CAGTTGATTCACGGCGAGGTGGGCAGCAAACTCAAGGTCATGCTGGGTGG
AGGCAAGCGAAGCTTCTATAGTCCGGAACACTACGACAAGGGCCGGCGCA
CTGATGGTCGTAATCTCGTCGAGGAATTCGAAGCCTTGGACGCGGGCAAC
ACCTTTGTGAAAACGCAGAAGAAGCTGCTCAATGTGAACGCCACTGAAAC
CGGTAGATTGTTGGGCCTGTTCAGCAAGAGCCACATGCACTATCATCTGG
AGCAACTGGCCGATCCGGACAACAATGAGCCCACCTTGGAGGAGATGACA
CAGAAGGCCATTGAAGTGCTGGAAACCGAAGAGCAGGGATACTTCCTTTT
CGTTGAAGGAGGTAAAATCGACATCAGCCACCACGAAACAATGGCACGAA
TTGCTTTGGATGAGACCGCTGAACTCTCGAAGGCGGTGAAGAAGGCTAGG
GAGATGACCAACCCGGAGGAGACCCTCATTGTGGTGACCTCGGATCACTC
GCACACCTTCAGCGTTTCGGGATATCAACCACGAGGAAGCGACATCTTTG
GAGCTGCCAAGGCGAATGGCAAGGATGGCAAACCGTATCTGGCCTTGAGC
TATGCCAACGGCAAGAGTTTCCAGGACTACTACAATACGGAGACCCACGA
GCGCGTGGATCCCACCAGTCTGCCCACAATCGGAGACTTCGATCAGCTCT
TCCCCGCGATGGTGCCCCTTGAATCGGAGACCCATGGCGGCGAGGATGTG
GGTGTCTTCGCCTCGGGACCCTGGGCACATCTCTTCACTGGCGTCTACGA
ACAGAACACCATTCCTCACATGATGGCATTCGCTGCCTGTGTGGGCGATG
GACTAACCGCTTGCGATTAGAAGCTTTCTAGACCAT
BS07403.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:40:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5150-RB | 1554 | CG5150-PB | 1..1554 | 17..1570 | 7770 | 100 | Plus |
CG5150-RA | 1554 | CG5150-PA | 1..1554 | 17..1570 | 7770 | 100 | Plus |
CG10827-RA | 1569 | CG10827-PA | 544..650 | 533..639 | 220 | 80.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:40:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5150-RB | 1881 | CG5150-RB | 45..1598 | 17..1570 | 7770 | 100 | Plus |
CG5150-RA | 1796 | CG5150-RA | 45..1598 | 17..1570 | 7770 | 100 | Plus |
CG10827-RA | 1674 | CG10827-RA | 560..666 | 533..639 | 220 | 80.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:40:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5595586..5597139 | 17..1570 | 7770 | 100 | Plus |
3R | 32079331 | 3R | 21005271..21005380 | 1548..1439 | 220 | 80 | Minus |
3R | 32079331 | 3R | 21006325..21006431 | 639..533 | 220 | 80.4 | Minus |
3L | 28110227 | 3L | 5593288..5593351 | 1207..1144 | 185 | 85.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:40:05 has no hits.
BS07403.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:14 Download gff for
BS07403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5150-RA | 1..1554 | 17..1570 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:24 Download gff for
BS07403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5150-RA | 31..1594 | 6..1570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:48 Download gff for
BS07403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5150-RA | 45..1598 | 17..1570 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:14 Download gff for
BS07403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5150-RA | 31..1594 | 6..1570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:51 Download gff for
BS07403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5150-RA | 45..1598 | 17..1570 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:51 Download gff for
BS07403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5595586..5597139 | 17..1570 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:48 Download gff for
BS07403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5588686..5590239 | 17..1570 | 100 | | Plus |
BS07403.pep Sequence
Translation from 16 to 1569
> BS07403.pep
MLSLKFWIRLGLLTVVWGAAVPGRAPVDEERMHPHLPTSPRLRTISGEET
QEFWHSASKKLIREKLEFVRNTKKAKNIILFLGDGMGLATLAAARSYIGG
EELKLSFEEFPFTGLSKTYSVDKIVPDSACTSTSYLCGVKANYGTIGVNA
HVKRGDCAAMANETNHVFSLGKWAMDAGKAAGLVTTTRVTHASPSGVYAH
VADREWENNAVLEEACGELSDGLQDIAVQLIHGEVGSKLKVMLGGGKRSF
YSPEHYDKGRRTDGRNLVEEFEALDAGNTFVKTQKKLLNVNATETGRLLG
LFSKSHMHYHLEQLADPDNNEPTLEEMTQKAIEVLETEEQGYFLFVEGGK
IDISHHETMARIALDETAELSKAVKKAREMTNPEETLIVVTSDHSHTFSV
SGYQPRGSDIFGAAKANGKDGKPYLALSYANGKSFQDYYNTETHERVDPT
SLPTIGDFDQLFPAMVPLESETHGGEDVGVFASGPWAHLFTGVYEQNTIP
HMMAFAACVGDGLTACD*
BS07403.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5150-PB | 517 | CG5150-PB | 1..517 | 1..517 | 2710 | 100 | Plus |
CG5150-PA | 517 | CG5150-PA | 1..517 | 1..517 | 2710 | 100 | Plus |
CG10827-PA | 522 | CG10827-PA | 20..521 | 17..516 | 1516 | 56.3 | Plus |
CG10592-PA | 524 | CG10592-PA | 27..514 | 29..510 | 1124 | 48.1 | Plus |
CG8147-PA | 546 | CG8147-PA | 61..532 | 46..511 | 1118 | 50 | Plus |