Clone BS07404 Report

Search the DGRC for BS07404

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG30160-RA
Protein status:BS07404.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07404.3prime Sequence

699 bp (698 high quality bases) assembled on 2006-01-06

> BS07404.3prime
ATGGTCTAGAAAGCTTCTAGCGCTTCCTCATCGCGCTGGCGAGGCAGCAC
GACATGATGAAGATGCCCAGCTCGAAGAGGGCGATGATCAGACTGCTCCA
TCGAATCAGGTCCGTATTGGAGGCCCAGAAATCGACGAACTCCTGCCGGC
AGCCAGGTCGCTGGCTGTAGATCTCCGCTTCGCACACCTTGGTGCGATCC
TTGTAGCCGCAGCAGGAGCTGGGCACGGTTTCATACTGTTGGTATCCCGT
GTTGCCACAGCAAGAGAAGGCCAACTGGAGGGCATCCATGGGGTATCCCT
GGGCGGCATTGTTCTCATCCCACGCCTTGTCCACTGCCTTGCCCATGCTG
GACAGGAACTTGTCGTTGGCCGCGAAGATCCAGATGGAGAGGGCCAGTTG
CAGGCCGAACAGAATCAGCATGCAGATGGCGTAGATGGTGGTGCAGCAGG
CGTTCTCGCGAATGGTGCCGCAGCATCCGAAGAAGGCCACTACGAAGGTG
ACACTTCCGATGACGATAATGCAGATCGGGATGGTCTGGGTGTTAACGCC
TCCGTCGAAGGCCGTAAAGTTGCCCATCGTGGAGAGCATGATGGAGCCCA
CCACAATGAGCAGGATGCCACCGGCCACGAACACCAGGTTGAGCAAGTAC
AGCAGGTACTTGAACATCGCGGATAGACAGTTCATGTCGACTGATAACT

BS07404.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG18816-PA 669 Tsp42Eb-RA 1..669 685..17 3320 99.8 Minus
CG18816-PB 669 Tsp42Eb-RB 1..669 685..17 3320 99.8 Minus
CG30160-PA 669 CG30160-RA 1..669 685..17 3320 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG30160-RA 844 CG30160-RA 61..731 686..16 3340 99.9 Minus
Tsp42Eb-RB 865 CG18816-RB 82..752 686..16 3340 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:02:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6998929..6999181 686..434 1265 100 Minus
2R 25286936 2R 7005217..7005469 686..434 1265 100 Minus
2R 25286936 2R 6999483..6999735 268..16 1250 99.6 Minus
2R 25286936 2R 7005771..7006023 268..16 1250 99.6 Minus
2R 25286936 2R 6999246..6999410 433..269 825 100 Minus
2R 25286936 2R 7005534..7005698 433..269 825 100 Minus
Blast to na_te.dros performed on 2015-02-01 08:02:06 has no hits.

BS07404.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:48 Download gff for BS07404.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18816-PA 1..669 17..685 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:35 Download gff for BS07404.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30160-PA 1..669 17..685 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:19:50 Download gff for BS07404.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30160-RA 55..733 13..693 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:48:12 Download gff for BS07404.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eb-RB 76..754 13..693 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:48:12 Download gff for BS07404.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6998923..6999181 434..693 98 -> Minus
2R 6999246..6999410 269..433 100 -> Minus
2R 6999483..6999737 13..268 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:19:50 Download gff for BS07404.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2886428..2886686 434..693 98 -> Minus
arm_2R 2886751..2886915 269..433 100 -> Minus
arm_2R 2886988..2887242 13..268 99   Minus

BS07404.5prime Sequence

699 bp (698 high quality bases) assembled on 2006-01-06

> BS07404.5prime
GAAGTTATCAGTCGACATGAACTGTCTATCCGCGATGTTCAAGTACCTGC
TGTACTTGCTCAACCTGGTGTTCGTGGCCGGTGGCATCCTGCTCATTGTG
GTGGGCTCCATCATGCTCTCCACGATGGGCAACTTTACGGCCTTCGACGG
AGGCGTTAACACCCAGACCATCCCGATCTGCATTATCGTCATCGGAAGTG
TCACCTTCGTAGTGGCCTTCTTCGGATGCTGCGGCACCATTCGCGAGAAC
GCCTGCTGCACCACCATCTACGCCATCTGCATGCTGATTCTGTTCGGCCT
GCAACTGGCCCTCTCCATCTGGATCTTCGCGGCCAACGACAAGTTCCTGT
CCAGCATGGGCAAGGCAGTGGACAAGGCGTGGGATGAGAACAATGCCGCC
CAGGGATACCCCATGGATGCCCTCCAGTTGGCCTTCTCTTGCTGTGGCAA
CACGGGATACCAACAGTATGAAACCGTGCCCAGCTCCTGCTGCGGCTACA
AGGATCGCACCAAGGTGTGCGAAGCGGAGATCTACAGCCAGCGACCTGGC
TGCCGGCAGGAGTTCGTCGATTTCTGGGCCTCCAATACGGACCTGATTCG
ATGGAGCAGTCTGATCATCGCCCTCTTCGAGCTGGGCATCTTCATCATGT
CGTGCTGCCTCGCCAGCGCGATGAGGAAGCGCTAGAAGCTTTCTAGACC

BS07404.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG18816-PA 669 Tsp42Eb-RA 1..669 17..685 3320 99.8 Plus
CG18816-PB 669 Tsp42Eb-RB 1..669 17..685 3320 99.8 Plus
CG30160-PA 669 CG30160-RA 1..669 17..685 3320 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG30160-RA 844 CG30160-RA 61..731 16..686 3340 99.9 Plus
Tsp42Eb-RB 865 CG18816-RB 82..752 16..686 3340 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6998929..6999181 16..268 1265 100 Plus
2R 25286936 2R 7005217..7005469 16..268 1265 100 Plus
2R 25286936 2R 6999483..6999735 434..686 1250 99.6 Plus
2R 25286936 2R 7005771..7006023 434..686 1250 99.6 Plus
2R 25286936 2R 6999246..6999410 269..433 825 100 Plus
2R 25286936 2R 7005534..7005698 269..433 825 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:34:46 has no hits.

BS07404.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:49 Download gff for BS07404.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18816-PA 1..669 17..685 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:36 Download gff for BS07404.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30160-PA 1..669 17..685 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:17:02 Download gff for BS07404.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30160-RA 55..733 9..689 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:55:56 Download gff for BS07404.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eb-RB 76..754 9..689 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:55:56 Download gff for BS07404.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6999483..6999737 434..689 99   Plus
2R 6998923..6999181 9..268 98 -> Plus
2R 6999246..6999410 269..433 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:17:02 Download gff for BS07404.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2886428..2886686 9..268 98 -> Plus
arm_2R 2886751..2886915 269..433 100 -> Plus
arm_2R 2886988..2887242 434..689 99   Plus

BS07404.complete Sequence

701 bp (701 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635843

> BS07404.complete
GAAGTTATCAGTCGACATGAACTGTCTATCCGCGATGTTCAAGTACCTGC
TGTACTTGCTCAACCTGGTGTTCGTGGCCGGTGGCATCCTGCTCATTGTG
GTGGGCTCCATCATGCTCTCCACGATGGGCAACTTTACGGCCTTCGACGG
AGGCGTTAACACCCAGACCATCCCGATCTGCATTATCGTCATCGGAAGTG
TCACCTTCGTAGTGGCCTTCTTCGGATGCTGCGGCACCATTCGCGAGAAC
GCCTGCTGCACCACCATCTACGCCATCTGCATGCTGATTCTGTTCGGCCT
GCAACTGGCCCTCTCCATCTGGATCTTCGCGGCCAACGACAAGTTCCTGT
CCAGCATGGGCAAGGCAGTGGACAAGGCGTGGGATGAGAACAATGCCGCC
CAGGGATACCCCATGGATGCCCTCCAGTTGGCCTTCTCTTGCTGTGGCAA
CACGGGATACCAACAGTATGAAACCGTGCCCAGCTCCTGCTGCGGCTACA
AGGATCGCACCAAGGTGTGCGAAGCGGAGATCTACAGCCAGCGACCTGGC
TGCCGGCAGGAGTTCGTCGATTTCTGGGCCTCCAATACGGACCTGATTCG
ATGGAGCAGTCTGATCATCGCCCTCTTCGAGCTGGGCATCTTCATCATGT
CGTGCTGCCTCGCCAGCGCGATGAGGAAGCGCTAGAAGCTTTCTAGACCA
T

BS07404.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG30160-RA 669 CG30160-PA 1..669 17..685 3330 99.9 Plus
Tsp42Eb-RB 669 CG18816-PB 1..669 17..685 3330 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG30160-RA 844 CG30160-RA 61..731 16..686 3340 99.9 Plus
Tsp42Eb-RB 865 CG18816-RB 82..752 16..686 3340 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6998929..6999181 16..268 1265 100 Plus
2R 25286936 2R 7005217..7005469 16..268 1265 100 Plus
2R 25286936 2R 6999483..6999735 434..686 1250 99.6 Plus
2R 25286936 2R 7005771..7006023 434..686 1250 99.6 Plus
2R 25286936 2R 6999246..6999410 269..433 825 100 Plus
2R 25286936 2R 7005534..7005698 269..433 825 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:04:12 has no hits.

BS07404.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:57 Download gff for BS07404.complete
Subject Subject Range Query Range Percent Splice Strand
CG30160-RA 1..669 17..685 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:11 Download gff for BS07404.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eb-RB 71..749 9..689 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:20 Download gff for BS07404.complete
Subject Subject Range Query Range Percent Splice Strand
CG30160-RA 62..730 17..685 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:57 Download gff for BS07404.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eb-RB 71..749 9..689 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:21 Download gff for BS07404.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Eb-RB 83..751 17..685 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:21 Download gff for BS07404.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6998930..6999181 17..268 100 -> Plus
2R 6999246..6999410 269..433 100 -> Plus
2R 6999483..6999734 434..685 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:20 Download gff for BS07404.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2886435..2886686 17..268 100 -> Plus
arm_2R 2886751..2886915 269..433 100 -> Plus
arm_2R 2886988..2887239 434..685 99   Plus

BS07404.pep Sequence

Translation from 16 to 684

> BS07404.pep
MNCLSAMFKYLLYLLNLVFVAGGILLIVVGSIMLSTMGNFTAFDGGVNTQ
TIPICIIVIGSVTFVVAFFGCCGTIRENACCTTIYAICMLILFGLQLALS
IWIFAANDKFLSSMGKAVDKAWDENNAAQGYPMDALQLAFSCCGNTGYQQ
YETVPSSCCGYKDRTKVCEAEIYSQRPGCRQEFVDFWASNTDLIRWSSLI
IALFELGIFIMSCCLASAMRKR*

BS07404.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG30160-PA 222 CG30160-PA 1..222 1..222 1177 100 Plus
Tsp42Eb-PB 222 CG18816-PB 1..222 1..222 1177 100 Plus
Tsp42Ec-PA 232 CG12847-PA 1..224 1..222 513 41.9 Plus
Tsp42Ea-PC 226 CG18817-PC 1..218 1..220 454 39 Plus
Tsp42Ea-PB 226 CG18817-PB 1..218 1..220 454 39 Plus