Clone Sequence Records
BS07404.3prime Sequence
699 bp (698 high quality bases) assembled on 2006-01-06
> BS07404.3prime
ATGGTCTAGAAAGCTTCTAGCGCTTCCTCATCGCGCTGGCGAGGCAGCAC
GACATGATGAAGATGCCCAGCTCGAAGAGGGCGATGATCAGACTGCTCCA
TCGAATCAGGTCCGTATTGGAGGCCCAGAAATCGACGAACTCCTGCCGGC
AGCCAGGTCGCTGGCTGTAGATCTCCGCTTCGCACACCTTGGTGCGATCC
TTGTAGCCGCAGCAGGAGCTGGGCACGGTTTCATACTGTTGGTATCCCGT
GTTGCCACAGCAAGAGAAGGCCAACTGGAGGGCATCCATGGGGTATCCCT
GGGCGGCATTGTTCTCATCCCACGCCTTGTCCACTGCCTTGCCCATGCTG
GACAGGAACTTGTCGTTGGCCGCGAAGATCCAGATGGAGAGGGCCAGTTG
CAGGCCGAACAGAATCAGCATGCAGATGGCGTAGATGGTGGTGCAGCAGG
CGTTCTCGCGAATGGTGCCGCAGCATCCGAAGAAGGCCACTACGAAGGTG
ACACTTCCGATGACGATAATGCAGATCGGGATGGTCTGGGTGTTAACGCC
TCCGTCGAAGGCCGTAAAGTTGCCCATCGTGGAGAGCATGATGGAGCCCA
CCACAATGAGCAGGATGCCACCGGCCACGAACACCAGGTTGAGCAAGTAC
AGCAGGTACTTGAACATCGCGGATAGACAGTTCATGTCGACTGATAACT
BS07404.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18816-PA | 669 | Tsp42Eb-RA | 1..669 | 685..17 | 3320 | 99.8 | Minus |
CG18816-PB | 669 | Tsp42Eb-RB | 1..669 | 685..17 | 3320 | 99.8 | Minus |
CG30160-PA | 669 | CG30160-RA | 1..669 | 685..17 | 3320 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:02:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30160-RA | 844 | CG30160-RA | 61..731 | 686..16 | 3340 | 99.9 | Minus |
Tsp42Eb-RB | 865 | CG18816-RB | 82..752 | 686..16 | 3340 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:02:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6998929..6999181 | 686..434 | 1265 | 100 | Minus |
2R | 25286936 | 2R | 7005217..7005469 | 686..434 | 1265 | 100 | Minus |
2R | 25286936 | 2R | 6999483..6999735 | 268..16 | 1250 | 99.6 | Minus |
2R | 25286936 | 2R | 7005771..7006023 | 268..16 | 1250 | 99.6 | Minus |
2R | 25286936 | 2R | 6999246..6999410 | 433..269 | 825 | 100 | Minus |
2R | 25286936 | 2R | 7005534..7005698 | 433..269 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 08:02:06 has no hits.
BS07404.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:48 Download gff for
BS07404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18816-PA | 1..669 | 17..685 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:35 Download gff for
BS07404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30160-PA | 1..669 | 17..685 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:19:50 Download gff for
BS07404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30160-RA | 55..733 | 13..693 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:48:12 Download gff for
BS07404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Eb-RB | 76..754 | 13..693 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:48:12 Download gff for
BS07404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6998923..6999181 | 434..693 | 98 | -> | Minus |
2R | 6999246..6999410 | 269..433 | 100 | -> | Minus |
2R | 6999483..6999737 | 13..268 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:19:50 Download gff for
BS07404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2886428..2886686 | 434..693 | 98 | -> | Minus |
arm_2R | 2886751..2886915 | 269..433 | 100 | -> | Minus |
arm_2R | 2886988..2887242 | 13..268 | 99 | | Minus |
BS07404.5prime Sequence
699 bp (698 high quality bases) assembled on 2006-01-06
> BS07404.5prime
GAAGTTATCAGTCGACATGAACTGTCTATCCGCGATGTTCAAGTACCTGC
TGTACTTGCTCAACCTGGTGTTCGTGGCCGGTGGCATCCTGCTCATTGTG
GTGGGCTCCATCATGCTCTCCACGATGGGCAACTTTACGGCCTTCGACGG
AGGCGTTAACACCCAGACCATCCCGATCTGCATTATCGTCATCGGAAGTG
TCACCTTCGTAGTGGCCTTCTTCGGATGCTGCGGCACCATTCGCGAGAAC
GCCTGCTGCACCACCATCTACGCCATCTGCATGCTGATTCTGTTCGGCCT
GCAACTGGCCCTCTCCATCTGGATCTTCGCGGCCAACGACAAGTTCCTGT
CCAGCATGGGCAAGGCAGTGGACAAGGCGTGGGATGAGAACAATGCCGCC
CAGGGATACCCCATGGATGCCCTCCAGTTGGCCTTCTCTTGCTGTGGCAA
CACGGGATACCAACAGTATGAAACCGTGCCCAGCTCCTGCTGCGGCTACA
AGGATCGCACCAAGGTGTGCGAAGCGGAGATCTACAGCCAGCGACCTGGC
TGCCGGCAGGAGTTCGTCGATTTCTGGGCCTCCAATACGGACCTGATTCG
ATGGAGCAGTCTGATCATCGCCCTCTTCGAGCTGGGCATCTTCATCATGT
CGTGCTGCCTCGCCAGCGCGATGAGGAAGCGCTAGAAGCTTTCTAGACC
BS07404.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18816-PA | 669 | Tsp42Eb-RA | 1..669 | 17..685 | 3320 | 99.8 | Plus |
CG18816-PB | 669 | Tsp42Eb-RB | 1..669 | 17..685 | 3320 | 99.8 | Plus |
CG30160-PA | 669 | CG30160-RA | 1..669 | 17..685 | 3320 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:34:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30160-RA | 844 | CG30160-RA | 61..731 | 16..686 | 3340 | 99.9 | Plus |
Tsp42Eb-RB | 865 | CG18816-RB | 82..752 | 16..686 | 3340 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:34:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6998929..6999181 | 16..268 | 1265 | 100 | Plus |
2R | 25286936 | 2R | 7005217..7005469 | 16..268 | 1265 | 100 | Plus |
2R | 25286936 | 2R | 6999483..6999735 | 434..686 | 1250 | 99.6 | Plus |
2R | 25286936 | 2R | 7005771..7006023 | 434..686 | 1250 | 99.6 | Plus |
2R | 25286936 | 2R | 6999246..6999410 | 269..433 | 825 | 100 | Plus |
2R | 25286936 | 2R | 7005534..7005698 | 269..433 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:34:46 has no hits.
BS07404.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:49 Download gff for
BS07404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18816-PA | 1..669 | 17..685 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:36 Download gff for
BS07404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30160-PA | 1..669 | 17..685 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:17:02 Download gff for
BS07404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30160-RA | 55..733 | 9..689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:55:56 Download gff for
BS07404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Eb-RB | 76..754 | 9..689 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:55:56 Download gff for
BS07404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6999483..6999737 | 434..689 | 99 | | Plus |
2R | 6998923..6999181 | 9..268 | 98 | -> | Plus |
2R | 6999246..6999410 | 269..433 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:17:02 Download gff for
BS07404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2886428..2886686 | 9..268 | 98 | -> | Plus |
arm_2R | 2886751..2886915 | 269..433 | 100 | -> | Plus |
arm_2R | 2886988..2887242 | 434..689 | 99 | | Plus |
BS07404.complete Sequence
701 bp (701 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635843
> BS07404.complete
GAAGTTATCAGTCGACATGAACTGTCTATCCGCGATGTTCAAGTACCTGC
TGTACTTGCTCAACCTGGTGTTCGTGGCCGGTGGCATCCTGCTCATTGTG
GTGGGCTCCATCATGCTCTCCACGATGGGCAACTTTACGGCCTTCGACGG
AGGCGTTAACACCCAGACCATCCCGATCTGCATTATCGTCATCGGAAGTG
TCACCTTCGTAGTGGCCTTCTTCGGATGCTGCGGCACCATTCGCGAGAAC
GCCTGCTGCACCACCATCTACGCCATCTGCATGCTGATTCTGTTCGGCCT
GCAACTGGCCCTCTCCATCTGGATCTTCGCGGCCAACGACAAGTTCCTGT
CCAGCATGGGCAAGGCAGTGGACAAGGCGTGGGATGAGAACAATGCCGCC
CAGGGATACCCCATGGATGCCCTCCAGTTGGCCTTCTCTTGCTGTGGCAA
CACGGGATACCAACAGTATGAAACCGTGCCCAGCTCCTGCTGCGGCTACA
AGGATCGCACCAAGGTGTGCGAAGCGGAGATCTACAGCCAGCGACCTGGC
TGCCGGCAGGAGTTCGTCGATTTCTGGGCCTCCAATACGGACCTGATTCG
ATGGAGCAGTCTGATCATCGCCCTCTTCGAGCTGGGCATCTTCATCATGT
CGTGCTGCCTCGCCAGCGCGATGAGGAAGCGCTAGAAGCTTTCTAGACCA
T
BS07404.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:04:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30160-RA | 669 | CG30160-PA | 1..669 | 17..685 | 3330 | 99.9 | Plus |
Tsp42Eb-RB | 669 | CG18816-PB | 1..669 | 17..685 | 3330 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:04:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30160-RA | 844 | CG30160-RA | 61..731 | 16..686 | 3340 | 99.9 | Plus |
Tsp42Eb-RB | 865 | CG18816-RB | 82..752 | 16..686 | 3340 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:04:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6998929..6999181 | 16..268 | 1265 | 100 | Plus |
2R | 25286936 | 2R | 7005217..7005469 | 16..268 | 1265 | 100 | Plus |
2R | 25286936 | 2R | 6999483..6999735 | 434..686 | 1250 | 99.6 | Plus |
2R | 25286936 | 2R | 7005771..7006023 | 434..686 | 1250 | 99.6 | Plus |
2R | 25286936 | 2R | 6999246..6999410 | 269..433 | 825 | 100 | Plus |
2R | 25286936 | 2R | 7005534..7005698 | 269..433 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:04:12 has no hits.
BS07404.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:57 Download gff for
BS07404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30160-RA | 1..669 | 17..685 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:11 Download gff for
BS07404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Eb-RB | 71..749 | 9..689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:20 Download gff for
BS07404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30160-RA | 62..730 | 17..685 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:57 Download gff for
BS07404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Eb-RB | 71..749 | 9..689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:21 Download gff for
BS07404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Eb-RB | 83..751 | 17..685 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:21 Download gff for
BS07404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6998930..6999181 | 17..268 | 100 | -> | Plus |
2R | 6999246..6999410 | 269..433 | 100 | -> | Plus |
2R | 6999483..6999734 | 434..685 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:20 Download gff for
BS07404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2886435..2886686 | 17..268 | 100 | -> | Plus |
arm_2R | 2886751..2886915 | 269..433 | 100 | -> | Plus |
arm_2R | 2886988..2887239 | 434..685 | 99 | | Plus |
BS07404.pep Sequence
Translation from 16 to 684
> BS07404.pep
MNCLSAMFKYLLYLLNLVFVAGGILLIVVGSIMLSTMGNFTAFDGGVNTQ
TIPICIIVIGSVTFVVAFFGCCGTIRENACCTTIYAICMLILFGLQLALS
IWIFAANDKFLSSMGKAVDKAWDENNAAQGYPMDALQLAFSCCGNTGYQQ
YETVPSSCCGYKDRTKVCEAEIYSQRPGCRQEFVDFWASNTDLIRWSSLI
IALFELGIFIMSCCLASAMRKR*
BS07404.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:51:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30160-PA | 222 | CG30160-PA | 1..222 | 1..222 | 1177 | 100 | Plus |
Tsp42Eb-PB | 222 | CG18816-PB | 1..222 | 1..222 | 1177 | 100 | Plus |
Tsp42Ec-PA | 232 | CG12847-PA | 1..224 | 1..222 | 513 | 41.9 | Plus |
Tsp42Ea-PC | 226 | CG18817-PC | 1..218 | 1..220 | 454 | 39 | Plus |
Tsp42Ea-PB | 226 | CG18817-PB | 1..218 | 1..220 | 454 | 39 | Plus |