Clone Sequence Records
BS07405.3prime Sequence
882 bp (865 high quality bases) assembled on 2006-01-06
> BS07405.3prime
ATGGTCTAGAAAGCTTTCAATGGTACCTTTGGCCATGATGGTTAATGGCA
CTGTTGCTTGGATTTTCCAGCTCCTCAAAGTACTTCCGAGCGTTCCTTAT
GTTGACTAGCGTAGCCTCCGAGGGCAGCGTGGGATCCGACATGACCACCA
TCACGTAGGTGTTGCTGGTGAAGGTGTCAATGAAAGCGGCAAATGCGCTA
TTGCGCACCTCCATCGATTGGAACTTAGCGCCCAACTTCGAACAGCTCAG
CTTGAACTGCTTGATGATGTTGGACACCTTTTCAAAGCGGTGCGAGTCGC
GGTTCTTCTTGCTCTGGCAATGGGAGATCACCAAAAAGGTAGCCTTTTCG
AACAACAGCACCTCGTCCGCCTCAATTACATTTCCGAAATGTGTCACAGA
GTTCTCCAGGGCGGCAACATTTGGTATCAGCATCGTGACAATGGAAGACC
AGGCTTTGTATAATGTTTCATCCCAAATGCTGGTACGGAAACAGGTGACA
TTTCCGGGCTTTGATAATTTTATGAGATCCTCCATGCGCTCAGTAAACAC
ACTCTCGCGCAAGCCTTCCGGCACCAGGTCCATTTTGTGCACCAGACAGA
ATATCTTGGCCTCAGGCGAATTCTGCAGCAGTGCCTCCAGGCAGCTCTGG
TAGTAATGGATGTCGCGCTCTATCTCCTGGCTCTCCACATCAAACACATA
AATCAGCACTTCCACATTACGAAAGATGTTGTCTCGCTGCTGGGCAAAGT
ACTGCTTCATGAAGCCCTCCTGACCGCCACAGTCCCAGAGATTAAGCACC
AGGTTGCCCAGAAACCGCACATGGGAGTGCTCCACATCGATTGTTGCTCC
GAGGCGTGTCGTATCACGGGCGATATAGTTAG
BS07405.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11968-PA | 936 | CG11968-RA | 71..936 | 882..17 | 4330 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:29:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RagA-B-RA | 1408 | CG11968-RA | 162..1027 | 882..17 | 4330 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:29:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8983113..8983551 | 17..455 | 2195 | 100 | Plus |
3R | 32079331 | 3R | 8983613..8983997 | 456..840 | 1925 | 100 | Plus |
3R | 32079331 | 3R | 8984055..8984096 | 841..882 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:29:49 has no hits.
BS07405.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:50 Download gff for
BS07405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11968-PA | 71..936 | 17..882 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:37 Download gff for
BS07405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11968-PA | 71..936 | 17..882 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:29:47 Download gff for
BS07405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RagA-B-RA | 154..1019 | 17..882 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:06:41 Download gff for
BS07405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RagA-B-RA | 162..1027 | 17..882 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:06:41 Download gff for
BS07405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8983113..8983551 | 17..455 | 100 | <- | Plus |
3R | 8983613..8983997 | 456..840 | 100 | <- | Plus |
3R | 8984055..8984096 | 841..882 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:29:47 Download gff for
BS07405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4808835..4809273 | 17..455 | 100 | <- | Plus |
arm_3R | 4809335..4809719 | 456..840 | 100 | <- | Plus |
arm_3R | 4809777..4809818 | 841..882 | 100 | | Plus |
BS07405.5prime Sequence
958 bp (834 high quality bases) assembled on 2006-01-06
> BS07405.5prime
GAAGTTATCAGTCGACATGAAGAAAAAGGTGTTACTGATGGGGAAGAGCG
GATCCGGAAAGACCAGCATGCGCTCCATTATCTTTGCTAACTATATCGCC
CGTGATACGACACGCCTCGGAGCAACAATCGATGTGGAGCACTCCCATGT
GCGGTTTCTGGGCAACCTGGTGCTTAATCTCTGGGACTGTGGCGGTCAGG
AGGGCTTCATGAAGCAGTACTTTGCCCAGCAGCGAGACAACATCTTTCGT
AATGTGGAAGTGCTGATTTATGTGTTTGATGTGGAGAGCCAGGAGATAGA
GCGCGACATCCATTACTACCAGAGCTGCCTGGAGGCACTGCTGCAGAATT
CGCCTGAGGCCAAGATATTCTGTCTGGTGCACAAAATGGACCTGGTGCCG
GAAGGCTTGCGCGAGAGTGTGTTTACTGAGCGCATGGAGGATCTCATAAA
ATTATCAAAGCCCGGAAATGTCACCTGTTTCCGTACCAGCATTTGGGATG
AAACATTATACAAAGCCTGGTCTTCCATTGTCACGATGCTGATACCAAAT
GTTGCCGCCCTGGAGAACTCTGTGACACATTTCGGAAATGTAATTGAGGC
GGACGAGGTGCTGTTGTTCGAAAAGGCTACCTTTTTGGTGATCTCCCATT
GCCAGAGCAAGAAGAACCGCGACTCGCACCGCTTTGAAAAGGTGTCCAAC
ATCATCAAGCAGTTCAAGCTGAGCTGTTCGAAGTTGGGCGCTAAGTTCCA
ATCGATGGAGGTGCGCAATAGCGCATTTGCCGCTTTCATTGACACCTTCA
CCAGCAACACCTACGTGATGGTGGTCATGTCGGATCCCACGCTGCCCTCG
GAGGCTACGCTAGTCAACATAAGGAACGCTCGGAAGTACTTTTGAGAGCT
GGGAAATCAAAGCACAGTGCCCATTACCATCATGGGCAAAGGTACCATTG
AAAGCTTT
BS07405.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11968-PA | 936 | CG11968-RA | 1..876 | 17..892 | 4380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:11:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RagA-B-RA | 1408 | CG11968-RA | 92..1027 | 17..951 | 4520 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:11:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8983113..8983551 | 951..514 | 2010 | 97.7 | Minus |
3R | 32079331 | 3R | 8983613..8983997 | 513..129 | 1925 | 100 | Minus |
3R | 32079331 | 3R | 8984055..8984156 | 128..27 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:11:54 has no hits.
BS07405.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:51 Download gff for
BS07405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11968-PA | 1..936 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:39 Download gff for
BS07405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11968-PA | 1..936 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:56:28 Download gff for
BS07405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RagA-B-RA | 84..1019 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:12:37 Download gff for
BS07405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RagA-B-RA | 92..1027 | 17..951 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:12:37 Download gff for
BS07405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8983113..8983551 | 514..951 | 98 | <- | Minus |
3R | 8983613..8983997 | 129..513 | 100 | <- | Minus |
3R | 8984055..8984154 | 29..128 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:56:28 Download gff for
BS07405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4808835..4809273 | 514..951 | 98 | <- | Minus |
arm_3R | 4809335..4809719 | 129..513 | 100 | <- | Minus |
arm_3R | 4809777..4809876 | 29..128 | 100 | <- | Minus |
BS07405.complete Sequence
968 bp (968 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635844
> BS07405.complete
GAAGTTATCAGTCGACATGAAGAAAAAGGTGTTACTGATGGGGAAGAGCG
GATCCGGAAAGACCAGCATGCGCTCCATTATCTTTGCTAACTATATCGCC
CGTGATACGACACGCCTCGGAGCAACAATCGATGTGGAGCACTCCCATGT
GCGGTTTCTGGGCAACCTGGTGCTTAATCTCTGGGACTGTGGCGGTCAGG
AGGGCTTCATGAAGCAGTACTTTGCCCAGCAGCGAGACAACATCTTTCGT
AATGTGGAAGTGCTGATTTATGTGTTTGATGTGGAGAGCCAGGAGATAGA
GCGCGACATCCATTACTACCAGAGCTGCCTGGAGGCACTGCTGCAGAATT
CGCCTGAGGCCAAGATATTCTGTCTGGTGCACAAAATGGACCTGGTGCCG
GAAGGCTTGCGCGAGAGTGTGTTTACTGAGCGCATGGAGGATCTCATAAA
ATTATCAAAGCCCGGAAATGTCACCTGTTTCCGTACCAGCATTTGGGATG
AAACATTATACAAAGCCTGGTCTTCCATTGTCACGATGCTGATACCAAAT
GTTGCCGCCCTGGAGAACTCTGTGACACATTTCGGAAATGTAATTGAGGC
GGACGAGGTGCTGTTGTTCGAAAAGGCTACCTTTTTGGTGATCTCCCATT
GCCAGAGCAAGAAGAACCGCGACTCGCACCGCTTTGAAAAGGTGTCCAAC
ATCATCAAGCAGTTCAAGCTGAGCTGTTCGAAGTTGGGCGCTAAGTTCCA
ATCGATGGAGGTGCGCAATAGCGCATTTGCCGCTTTCATTGACACCTTCA
CCAGCAACACCTACGTGATGGTGGTCATGTCGGATCCCACGCTGCCCTCG
GAGGCTACGCTAGTCAACATAAGGAACGCTCGGAAGTACTTTGAGGAGCT
GGAAAATCCAAGCAACAGTGCCATTAACCATCATGGCCAAAGGTACCATT
GAAAGCTTTCTAGACCAT
BS07405.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:12:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RagA-B-RA | 936 | CG11968-PA | 1..936 | 17..952 | 4680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:12:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RagA-B-RA | 1408 | CG11968-RA | 92..1027 | 17..952 | 4680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:12:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8983113..8983551 | 952..514 | 2195 | 100 | Minus |
3R | 32079331 | 3R | 8983613..8983997 | 513..129 | 1925 | 100 | Minus |
3R | 32079331 | 3R | 8984055..8984156 | 128..27 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:12:07 has no hits.
BS07405.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:46 Download gff for
BS07405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11968-RA | 1..936 | 17..952 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:54 Download gff for
BS07405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11968-RA | 84..1019 | 17..952 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:43 Download gff for
BS07405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RagA-B-RA | 84..1018 | 17..951 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:47 Download gff for
BS07405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11968-RA | 84..1019 | 17..952 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:06 Download gff for
BS07405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RagA-B-RA | 92..1026 | 17..951 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:06 Download gff for
BS07405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8984055..8984154 | 29..128 | 100 | <- | Minus |
3R | 8983114..8983551 | 514..951 | 100 | <- | Minus |
3R | 8983613..8983997 | 129..513 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:43 Download gff for
BS07405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4808836..4809273 | 514..951 | 100 | <- | Minus |
arm_3R | 4809335..4809719 | 129..513 | 100 | <- | Minus |
arm_3R | 4809777..4809876 | 29..128 | 100 | <- | Minus |
BS07405.pep Sequence
Translation from 16 to 951
> BS07405.pep
MKKKVLLMGKSGSGKTSMRSIIFANYIARDTTRLGATIDVEHSHVRFLGN
LVLNLWDCGGQEGFMKQYFAQQRDNIFRNVEVLIYVFDVESQEIERDIHY
YQSCLEALLQNSPEAKIFCLVHKMDLVPEGLRESVFTERMEDLIKLSKPG
NVTCFRTSIWDETLYKAWSSIVTMLIPNVAALENSVTHFGNVIEADEVLL
FEKATFLVISHCQSKKNRDSHRFEKVSNIIKQFKLSCSKLGAKFQSMEVR
NSAFAAFIDTFTSNTYVMVVMSDPTLPSEATLVNIRNARKYFEELENPSN
SAINHHGQRYH*
BS07405.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RagA-B-PA | 311 | CG11968-PA | 1..311 | 1..311 | 1607 | 100 | Plus |