Clone BS07405 Report

Search the DGRC for BS07405

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptRagA-B-RA
Protein status:BS07405.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07405.3prime Sequence

882 bp (865 high quality bases) assembled on 2006-01-06

> BS07405.3prime
ATGGTCTAGAAAGCTTTCAATGGTACCTTTGGCCATGATGGTTAATGGCA
CTGTTGCTTGGATTTTCCAGCTCCTCAAAGTACTTCCGAGCGTTCCTTAT
GTTGACTAGCGTAGCCTCCGAGGGCAGCGTGGGATCCGACATGACCACCA
TCACGTAGGTGTTGCTGGTGAAGGTGTCAATGAAAGCGGCAAATGCGCTA
TTGCGCACCTCCATCGATTGGAACTTAGCGCCCAACTTCGAACAGCTCAG
CTTGAACTGCTTGATGATGTTGGACACCTTTTCAAAGCGGTGCGAGTCGC
GGTTCTTCTTGCTCTGGCAATGGGAGATCACCAAAAAGGTAGCCTTTTCG
AACAACAGCACCTCGTCCGCCTCAATTACATTTCCGAAATGTGTCACAGA
GTTCTCCAGGGCGGCAACATTTGGTATCAGCATCGTGACAATGGAAGACC
AGGCTTTGTATAATGTTTCATCCCAAATGCTGGTACGGAAACAGGTGACA
TTTCCGGGCTTTGATAATTTTATGAGATCCTCCATGCGCTCAGTAAACAC
ACTCTCGCGCAAGCCTTCCGGCACCAGGTCCATTTTGTGCACCAGACAGA
ATATCTTGGCCTCAGGCGAATTCTGCAGCAGTGCCTCCAGGCAGCTCTGG
TAGTAATGGATGTCGCGCTCTATCTCCTGGCTCTCCACATCAAACACATA
AATCAGCACTTCCACATTACGAAAGATGTTGTCTCGCTGCTGGGCAAAGT
ACTGCTTCATGAAGCCCTCCTGACCGCCACAGTCCCAGAGATTAAGCACC
AGGTTGCCCAGAAACCGCACATGGGAGTGCTCCACATCGATTGTTGCTCC
GAGGCGTGTCGTATCACGGGCGATATAGTTAG

BS07405.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG11968-PA 936 CG11968-RA 71..936 882..17 4330 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
RagA-B-RA 1408 CG11968-RA 162..1027 882..17 4330 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8983113..8983551 17..455 2195 100 Plus
3R 32079331 3R 8983613..8983997 456..840 1925 100 Plus
3R 32079331 3R 8984055..8984096 841..882 210 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:29:49 has no hits.

BS07405.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:50 Download gff for BS07405.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11968-PA 71..936 17..882 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:37 Download gff for BS07405.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11968-PA 71..936 17..882 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:29:47 Download gff for BS07405.3prime
Subject Subject Range Query Range Percent Splice Strand
RagA-B-RA 154..1019 17..882 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:06:41 Download gff for BS07405.3prime
Subject Subject Range Query Range Percent Splice Strand
RagA-B-RA 162..1027 17..882 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:06:41 Download gff for BS07405.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8983113..8983551 17..455 100 <- Plus
3R 8983613..8983997 456..840 100 <- Plus
3R 8984055..8984096 841..882 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:29:47 Download gff for BS07405.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4808835..4809273 17..455 100 <- Plus
arm_3R 4809335..4809719 456..840 100 <- Plus
arm_3R 4809777..4809818 841..882 100   Plus

BS07405.5prime Sequence

958 bp (834 high quality bases) assembled on 2006-01-06

> BS07405.5prime
GAAGTTATCAGTCGACATGAAGAAAAAGGTGTTACTGATGGGGAAGAGCG
GATCCGGAAAGACCAGCATGCGCTCCATTATCTTTGCTAACTATATCGCC
CGTGATACGACACGCCTCGGAGCAACAATCGATGTGGAGCACTCCCATGT
GCGGTTTCTGGGCAACCTGGTGCTTAATCTCTGGGACTGTGGCGGTCAGG
AGGGCTTCATGAAGCAGTACTTTGCCCAGCAGCGAGACAACATCTTTCGT
AATGTGGAAGTGCTGATTTATGTGTTTGATGTGGAGAGCCAGGAGATAGA
GCGCGACATCCATTACTACCAGAGCTGCCTGGAGGCACTGCTGCAGAATT
CGCCTGAGGCCAAGATATTCTGTCTGGTGCACAAAATGGACCTGGTGCCG
GAAGGCTTGCGCGAGAGTGTGTTTACTGAGCGCATGGAGGATCTCATAAA
ATTATCAAAGCCCGGAAATGTCACCTGTTTCCGTACCAGCATTTGGGATG
AAACATTATACAAAGCCTGGTCTTCCATTGTCACGATGCTGATACCAAAT
GTTGCCGCCCTGGAGAACTCTGTGACACATTTCGGAAATGTAATTGAGGC
GGACGAGGTGCTGTTGTTCGAAAAGGCTACCTTTTTGGTGATCTCCCATT
GCCAGAGCAAGAAGAACCGCGACTCGCACCGCTTTGAAAAGGTGTCCAAC
ATCATCAAGCAGTTCAAGCTGAGCTGTTCGAAGTTGGGCGCTAAGTTCCA
ATCGATGGAGGTGCGCAATAGCGCATTTGCCGCTTTCATTGACACCTTCA
CCAGCAACACCTACGTGATGGTGGTCATGTCGGATCCCACGCTGCCCTCG
GAGGCTACGCTAGTCAACATAAGGAACGCTCGGAAGTACTTTTGAGAGCT
GGGAAATCAAAGCACAGTGCCCATTACCATCATGGGCAAAGGTACCATTG
AAAGCTTT

BS07405.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG11968-PA 936 CG11968-RA 1..876 17..892 4380 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
RagA-B-RA 1408 CG11968-RA 92..1027 17..951 4520 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:11:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8983113..8983551 951..514 2010 97.7 Minus
3R 32079331 3R 8983613..8983997 513..129 1925 100 Minus
3R 32079331 3R 8984055..8984156 128..27 510 100 Minus
Blast to na_te.dros performed on 2015-02-13 08:11:54 has no hits.

BS07405.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:51 Download gff for BS07405.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11968-PA 1..936 17..951 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:39 Download gff for BS07405.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11968-PA 1..936 17..951 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:56:28 Download gff for BS07405.5prime
Subject Subject Range Query Range Percent Splice Strand
RagA-B-RA 84..1019 17..951 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:12:37 Download gff for BS07405.5prime
Subject Subject Range Query Range Percent Splice Strand
RagA-B-RA 92..1027 17..951 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:12:37 Download gff for BS07405.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8983113..8983551 514..951 98 <- Minus
3R 8983613..8983997 129..513 100 <- Minus
3R 8984055..8984154 29..128 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:56:28 Download gff for BS07405.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4808835..4809273 514..951 98 <- Minus
arm_3R 4809335..4809719 129..513 100 <- Minus
arm_3R 4809777..4809876 29..128 100 <- Minus

BS07405.complete Sequence

968 bp (968 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635844

> BS07405.complete
GAAGTTATCAGTCGACATGAAGAAAAAGGTGTTACTGATGGGGAAGAGCG
GATCCGGAAAGACCAGCATGCGCTCCATTATCTTTGCTAACTATATCGCC
CGTGATACGACACGCCTCGGAGCAACAATCGATGTGGAGCACTCCCATGT
GCGGTTTCTGGGCAACCTGGTGCTTAATCTCTGGGACTGTGGCGGTCAGG
AGGGCTTCATGAAGCAGTACTTTGCCCAGCAGCGAGACAACATCTTTCGT
AATGTGGAAGTGCTGATTTATGTGTTTGATGTGGAGAGCCAGGAGATAGA
GCGCGACATCCATTACTACCAGAGCTGCCTGGAGGCACTGCTGCAGAATT
CGCCTGAGGCCAAGATATTCTGTCTGGTGCACAAAATGGACCTGGTGCCG
GAAGGCTTGCGCGAGAGTGTGTTTACTGAGCGCATGGAGGATCTCATAAA
ATTATCAAAGCCCGGAAATGTCACCTGTTTCCGTACCAGCATTTGGGATG
AAACATTATACAAAGCCTGGTCTTCCATTGTCACGATGCTGATACCAAAT
GTTGCCGCCCTGGAGAACTCTGTGACACATTTCGGAAATGTAATTGAGGC
GGACGAGGTGCTGTTGTTCGAAAAGGCTACCTTTTTGGTGATCTCCCATT
GCCAGAGCAAGAAGAACCGCGACTCGCACCGCTTTGAAAAGGTGTCCAAC
ATCATCAAGCAGTTCAAGCTGAGCTGTTCGAAGTTGGGCGCTAAGTTCCA
ATCGATGGAGGTGCGCAATAGCGCATTTGCCGCTTTCATTGACACCTTCA
CCAGCAACACCTACGTGATGGTGGTCATGTCGGATCCCACGCTGCCCTCG
GAGGCTACGCTAGTCAACATAAGGAACGCTCGGAAGTACTTTGAGGAGCT
GGAAAATCCAAGCAACAGTGCCATTAACCATCATGGCCAAAGGTACCATT
GAAAGCTTTCTAGACCAT

BS07405.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:12:08
Subject Length Description Subject Range Query Range Score Percent Strand
RagA-B-RA 936 CG11968-PA 1..936 17..952 4680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
RagA-B-RA 1408 CG11968-RA 92..1027 17..952 4680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:12:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8983113..8983551 952..514 2195 100 Minus
3R 32079331 3R 8983613..8983997 513..129 1925 100 Minus
3R 32079331 3R 8984055..8984156 128..27 510 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:12:07 has no hits.

BS07405.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:46 Download gff for BS07405.complete
Subject Subject Range Query Range Percent Splice Strand
CG11968-RA 1..936 17..952 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:54 Download gff for BS07405.complete
Subject Subject Range Query Range Percent Splice Strand
CG11968-RA 84..1019 17..952 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:43 Download gff for BS07405.complete
Subject Subject Range Query Range Percent Splice Strand
RagA-B-RA 84..1018 17..951 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:47 Download gff for BS07405.complete
Subject Subject Range Query Range Percent Splice Strand
CG11968-RA 84..1019 17..952 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:06 Download gff for BS07405.complete
Subject Subject Range Query Range Percent Splice Strand
RagA-B-RA 92..1026 17..951 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:06 Download gff for BS07405.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8984055..8984154 29..128 100 <- Minus
3R 8983114..8983551 514..951 100 <- Minus
3R 8983613..8983997 129..513 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:43 Download gff for BS07405.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4808836..4809273 514..951 100 <- Minus
arm_3R 4809335..4809719 129..513 100 <- Minus
arm_3R 4809777..4809876 29..128 100 <- Minus

BS07405.pep Sequence

Translation from 16 to 951

> BS07405.pep
MKKKVLLMGKSGSGKTSMRSIIFANYIARDTTRLGATIDVEHSHVRFLGN
LVLNLWDCGGQEGFMKQYFAQQRDNIFRNVEVLIYVFDVESQEIERDIHY
YQSCLEALLQNSPEAKIFCLVHKMDLVPEGLRESVFTERMEDLIKLSKPG
NVTCFRTSIWDETLYKAWSSIVTMLIPNVAALENSVTHFGNVIEADEVLL
FEKATFLVISHCQSKKNRDSHRFEKVSNIIKQFKLSCSKLGAKFQSMEVR
NSAFAAFIDTFTSNTYVMVVMSDPTLPSEATLVNIRNARKYFEELENPSN
SAINHHGQRYH*

BS07405.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:43
Subject Length Description Subject Range Query Range Score Percent Strand
RagA-B-PA 311 CG11968-PA 1..311 1..311 1607 100 Plus