Clone BS07406 Report

Search the DGRC for BS07406

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:6
Vector:pDNR-Dual
Associated Gene/Transcriptflw-RA
Protein status:BS07406.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07406.3prime Sequence

911 bp (845 high quality bases) assembled on 2006-01-06

> BS07406.3prime
ATGGTCTAGAAAGCTTTTATTTCTTCTTGTTGGTCGCAAGCATTGGGGCG
CTGCGCTGCGGTGTTGTGGGTCGCGACGAGTTCATTCCGCTGTACAGATA
CTTGGCCTTCTTCTCGGATGGTTTCAGGATCTGGAATGAGCACATCAGCG
TGTCGTCCACGGTCATCATTCCGCCGGCATTGTCGAACTCTCCACAGTAA
TTGGGCGCCGAGAACAACGTGACCAGTTGCCGACGCGCAAAGAACTCATA
GCCATCCTCCACAACCTGATGTGCACGGCAGATCAAGTCCAGCTCGTGGC
GGTTCAAAAACTTGGAGACCACATCCACACCGAAGGTGAAGCTCACACCG
CGATCATTCTCGCCCCAACCCTGAACATCCTTGTCGGGATCACTCCACAG
AAGATCGCACAGTAACCCGGTATCCGGCACATCTGTGGGTCGCATTAGGC
GACGGATCTGCTCCATGCCCTGAAGATCGGGACTGAGGCCGCCGTGGCAG
CAGAAGATCTTTTCGTCAATAATGGCGGCTACCGGCAGACAGTTGAAGCA
ATCTGTGAAAGTCTTCCACAGTTTGACATTGTATCGGCGCTTGCACTCAT
CGTAGAAGCCGTAAATCCTATTAATACTGGCGCACTCGTGGTTGCCGCGC
AACAAGAAGAAGTTCTCCGGATATTTGATCTTGTAGGCCAGCAGCAGACA
GATGGTCTCCAGGGACTGCTTGCCCCGATCGACGTAGTCGCCGAGGAACA
AGTAGTTGGCAGCCGGAGGGAATCCGCCGTACTCGAACAGGCGCAACAGG
TCTGTGTACTGGCCGTGGATGTCGCCGCAGATGATCAGCGGTGCCTCCAG
TTCCAGCAGGATGGGCTGTTGCAAGAAGATCTCGCGCGACTTGAGACAGA
GGCCACGCACC

BS07406.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG2096-PA 1386 flw-RA 492..1386 911..17 4475 100 Minus
CG2096-PB 993 flw-RB 99..993 911..17 4475 100 Minus
CG9156-PA 909 Pp1-13C-RA 281..420 726..587 350 90 Minus
CG5650-PA 909 Pp1-87B-RA 257..419 750..588 340 88.3 Minus
CG6593-PA 984 Pp1alpha-96A-RA 250..380 757..627 330 90 Minus
CG5650-PA 909 Pp1-87B-RA 791..881 216..126 230 90.1 Minus
CG5650-PA 909 Pp1-87B-RA 437..531 570..476 175 87.3 Minus
CG6593-PA 984 Pp1alpha-96A-RA 640..671 367..336 135 96.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
flw-RC 3883 CG2096-RC 651..1545 911..17 4475 100 Minus
flw-RB 2131 CG2096-RB 651..1545 911..17 4475 100 Minus
flw-RA 2524 CG2096-RA 1044..1938 911..17 4475 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10406761..10407107 610..264 1735 100 Minus
3R 32079331 3R 12424792..12425574 110..892 1725 81.4 Plus
X 23542271 X 10406399..10406701 911..609 1515 100 Minus
X 23542271 X 15359441..15360235 110..904 1365 78.1 Plus
3R 32079331 3R 24518898..24519192 903..609 755 83.7 Minus
X 23542271 X 10407164..10407300 267..131 685 100 Minus
X 23542271 X 10407363..10407479 133..17 585 100 Minus
3R 32079331 3R 24519597..24519868 607..336 535 79.8 Minus
2R 25286936 2R 17955968..17956347 480..859 415 73.9 Plus
3R 32079331 3R 24519973..24520082 289..180 235 80.9 Minus
Blast to na_te.dros performed on 2015-02-12 12:39:16 has no hits.

BS07406.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:52 Download gff for BS07406.3prime
Subject Subject Range Query Range Percent Splice Strand
flw-PA 492..1386 17..911 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:40 Download gff for BS07406.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2096-PB 99..993 17..911 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:53:11 Download gff for BS07406.3prime
Subject Subject Range Query Range Percent Splice Strand
flw-RA 1044..1944 9..911 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:15:59 Download gff for BS07406.3prime
Subject Subject Range Query Range Percent Splice Strand
flw-RA 1044..1944 9..911 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:15:59 Download gff for BS07406.3prime
Subject Subject Range Query Range Percent Splice Strand
X 10406399..10406700 610..911 100 -> Minus
X 10406762..10407105 266..609 100 -> Minus
X 10407166..10407300 131..265 100 -> Minus
X 10407366..10407485 9..130 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:53:11 Download gff for BS07406.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10301399..10301518 9..130 96   Minus
arm_X 10300432..10300733 610..911 100 -> Minus
arm_X 10300795..10301138 266..609 100 -> Minus
arm_X 10301199..10301333 131..265 100 -> Minus

BS07406.5prime Sequence

922 bp (824 high quality bases) assembled on 2006-01-06

> BS07406.5prime
GAAGTTATCAGTCGACATGGGCGACTTCGATCTGAATGTGGACAGCTTGA
TACAGCGGCTGCTGGAGAACTTTAAAAAACAAAAAGAGGCCGAAGAGCAC
GCCCAGAAGCTGCTAATCGCTCAACAATTGGCCGCCGCCGGCGGAGCATC
CGGCGCATCTGCCACATCGCCCACATCCAGCAGCAATTACTCGTCGATGG
CGGCGGTGGCCTCCTTTGGATCCGGATACGGATCGGGATCTGGTGCTGGT
GCTCCTGGTGCCGGCGCTGGCCCAGGATCCAGCCATGATCCGCTCGACGA
TCTCACCGAACAGCAGCGCCGTCTGCTCCAGCAATACTCGATATCGCCGC
CCAGCGAGACGATGATATCGGCCGATGGCGACCAGATCACCGTCCATCAT
CCGCGCGAGGAGCCCAAGAAATCCAGATTGAAACTGCGCGATTTTTTCGT
CGCCGAGTTTGTGCGCAGCTGCCGAACGGGCAAACAGGTCCAGATGACGG
AGGCGGAGGTGCGTGGCCTCTGTCTCAAGTCGCGCGAGATCTTCTTGCAA
CAGCCCATCCTGCTGGAACTGGAGGCACCGCTGATCATCTGCGGCGACAT
CCACGGCCAGTACACAGACCTGTTGCGCCTGTTCGAGTACGGCGGATTCC
CTCCGGCTGCCAACTACTTGTTCCTCGGCGACTACGTCGATCGGGGCAAG
CAGTCCCTGGAGACCATCTGTCTGCTGCTGGCCTACAAGATCAAATATCC
GGAGAACTTCTTCTTGTTGCGCGGCAACCACGAGTGCGCCAGTATTAATA
GGATTTACGGCTTCTACGATGAGTGCAAGCGCCGATACAATGTCAAACTG
TGGAAGACTTTCACAGATTGCTTCAACTGTCTGCCGGTAGCCGCCATTAT
TGACGAAAAGATCTTCTGCTGC

BS07406.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG2096-PA 1386 flw-RA 1..906 17..922 4530 100 Plus
CG2096-PB 993 flw-RB 53..513 462..922 2305 100 Plus
CG9156-PA 909 Pp1-13C-RA 281..420 693..832 350 90 Plus
CG5650-PA 909 Pp1-87B-RA 257..419 669..831 340 88.3 Plus
CG6593-PA 984 Pp1alpha-96A-RA 250..380 662..792 330 90 Plus
CG2096-PB 993 flw-RB 1..52 17..68 260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:16:42
Subject Length Description Subject Range Query Range Score Percent Strand
flw-RA 2524 CG2096-RA 553..1458 17..922 4530 100 Plus
flw-RC 3883 CG2096-RC 605..1065 462..922 2305 100 Plus
flw-RB 2131 CG2096-RB 605..1065 462..922 2305 100 Plus
flw-RC 3883 CG2096-RC 553..604 17..68 260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10388443..10388835 69..461 1965 100 Plus
X 23542271 X 10406352..10406701 461..810 1750 100 Plus
3R 32079331 3R 12425179..12425574 922..527 1035 84.1 Minus
X 23542271 X 15359828..15360262 922..488 960 81.4 Minus
3R 32079331 3R 24518898..24519192 516..810 755 83.7 Plus
X 23542271 X 10406761..10406874 809..922 570 100 Plus
2R 25286936 2R 17956013..17956347 894..560 385 74.3 Minus
X 23542271 X 10386512..10386563 17..68 260 100 Plus
3R 32079331 3R 24519597..24519707 812..922 240 81.1 Plus
Blast to na_te.dros performed on 2015-02-12 20:16:41 has no hits.

BS07406.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:53 Download gff for BS07406.5prime
Subject Subject Range Query Range Percent Splice Strand
flw-PA 1..906 17..922 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:42 Download gff for BS07406.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2096-PA 1..906 17..922 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:37:01 Download gff for BS07406.5prime
Subject Subject Range Query Range Percent Splice Strand
flw-RA 553..1458 17..922 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:36:37 Download gff for BS07406.5prime
Subject Subject Range Query Range Percent Splice Strand
flw-RA 553..1458 17..922 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:36:37 Download gff for BS07406.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10386512..10386563 17..68 100 -> Plus
X 10388443..10388835 69..461 100 -> Plus
X 10406353..10406700 462..809 100 -> Plus
X 10406762..10406874 810..922 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:37:01 Download gff for BS07406.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10280545..10280596 17..68 100 -> Plus
arm_X 10282476..10282868 69..461 100 -> Plus
arm_X 10300386..10300733 462..809 100 -> Plus
arm_X 10300795..10300907 810..922 100   Plus

BS07406.complete Sequence

1418 bp (1418 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635845

> BS07406.complete
GAAGTTATCAGTCGACATGGGCGACTTCGATCTGAATGTGGACAGCTTGA
TACAGCGGCTGCTGGAGAACTTTAAAAAACAAAAAGAGGCCGAAGAGCAC
GCCCAGAAGCTGCTAATCGCTCAACAATTGGCCGCCGCCGGCGGAGCATC
CGGCGCATCTGCCACATCGCCCACATCCAGCAGCAATTACTCGTCGATGG
CGGCGGTGGCCTCCTTTGGATCCGGATACGGATCGGGATCTGGTGCTGGT
GCTCCTGGTGCCGGCGCTGGCCCAGGATCCAGCCATGATCCGCTCGACGA
TCTCACCGAACAGCAGCGCCGTCTGCTCCAGCAATACTCGATATCGCCGC
CCAGCGAGACGATGATATCGGCCGATGGCGACCAGATCACCGTCCATCAT
CCGCGCGAGGAGCCCAAGAAATCCAGATTGAAACTGCGCGATTTTTTCGT
CGCCGAGTTTGTGCGCAGCTGCCGAACGGGCAAACAGGTCCAGATGACGG
AGGCGGAGGTGCGTGGCCTCTGTCTCAAGTCGCGCGAGATCTTCTTGCAA
CAGCCCATCCTGCTGGAACTGGAGGCACCGCTGATCATCTGCGGCGACAT
CCACGGCCAGTACACAGACCTGTTGCGCCTGTTCGAGTACGGCGGATTCC
CTCCGGCTGCCAACTACTTGTTCCTCGGCGACTACGTCGATCGGGGCAAG
CAGTCCCTGGAGACCATCTGTCTGCTGCTGGCCTACAAGATCAAATATCC
GGAGAACTTCTTCTTGTTGCGCGGCAACCACGAGTGCGCCAGTATTAATA
GGATTTACGGCTTCTACGATGAGTGCAAGCGCCGATACAATGTCAAACTG
TGGAAGACTTTCACAGATTGCTTCAACTGTCTGCCGGTAGCCGCCATTAT
TGACGAAAAGATCTTCTGCTGCCACGGCGGCCTCAGTCCCGATCTTCAGG
GCATGGAGCAGATCCGTCGCCTAATGCGACCCACAGATGTGCCGGATACC
GGGTTACTGTGCGATCTTCTGTGGAGTGATCCCGACAAGGATGTTCAGGG
TTGGGGCGAGAATGATCGCGGTGTGAGCTTCACCTTCGGTGTGGATGTGG
TCTCCAAGTTTTTGAACCGCCACGAGCTGGACTTGATCTGCCGTGCACAT
CAGGTTGTGGAGGATGGCTATGAGTTCTTTGCGCGTCGGCAACTGGTCAC
GTTGTTCTCGGCGCCCAATTACTGTGGAGAGTTCGACAATGCCGGCGGAA
TGATGACCGTGGACGACACGCTGATGTGCTCATTCCAGATCCTGAAACCA
TCCGAGAAGAAGGCCAAGTATCTGTACAGCGGAATGAACTCGTCGCGACC
CACAACACCGCAGCGCAGCGCCCCAATGCTTGCGACCAACAAGAAGAAAT
AAAAGCTTTCTAGACCAT

BS07406.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
flw-RA 1386 CG2096-PA 1..1386 17..1402 6930 100 Plus
flw-RC 993 CG2096-PC 53..993 462..1402 4705 100 Plus
flw-RB 993 CG2096-PB 53..993 462..1402 4705 100 Plus
flw-RC 993 CG2096-PC 1..52 17..68 260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
flw-RA 2524 CG2096-RA 553..1938 17..1402 6930 100 Plus
flw-RC 3883 CG2096-RC 605..1545 462..1402 4705 100 Plus
flw-RB 2131 CG2096-RB 605..1545 462..1402 4705 100 Plus
flw-RC 3883 CG2096-RC 553..604 17..68 260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:42:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10388443..10388835 69..461 1965 100 Plus
X 23542271 X 10406352..10406701 461..810 1750 100 Plus
X 23542271 X 10406761..10407107 809..1155 1735 100 Plus
3R 32079331 3R 12424792..12425574 1309..527 1725 81.4 Minus
X 23542271 X 15359441..15360262 1309..488 1395 78 Minus
3R 32079331 3R 24518898..24519192 516..810 755 83.7 Plus
X 23542271 X 10407164..10407300 1152..1288 685 100 Plus
X 23542271 X 10407363..10407479 1286..1402 585 100 Plus
3R 32079331 3R 24519597..24519868 812..1083 535 79.8 Plus
2R 25286936 2R 17955968..17956347 939..560 415 73.9 Minus
Y 3667352 Y 3540059..3540414 942..587 280 71.9 Minus
2R 25286936 2R 21881871..21882040 945..776 265 77.1 Minus
X 23542271 X 10386512..10386563 17..68 260 100 Plus
Y 3667352 Y 3539692..3539862 1309..1139 255 76.6 Minus
3R 32079331 3R 24519973..24520082 1130..1239 235 80.9 Plus
2L 23513712 2L 3110521..3110621 1142..1242 205 80.2 Plus
2R 25286936 2R 17955651..17955759 1256..1148 200 78.9 Minus
Blast to na_te.dros performed on 2014-11-28 05:42:35 has no hits.

BS07406.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:48 Download gff for BS07406.complete
Subject Subject Range Query Range Percent Splice Strand
flw-RA 1..1386 17..1402 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:43:50 Download gff for BS07406.complete
Subject Subject Range Query Range Percent Splice Strand
flw-RA 580..1956 17..1393 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:41 Download gff for BS07406.complete
Subject Subject Range Query Range Percent Splice Strand
flw-RA 553..1929 17..1393 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:48 Download gff for BS07406.complete
Subject Subject Range Query Range Percent Splice Strand
flw-RA 580..1971 17..1410 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:16:40 Download gff for BS07406.complete
Subject Subject Range Query Range Percent Splice Strand
flw-RA 553..1929 17..1393 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:16:40 Download gff for BS07406.complete
Subject Subject Range Query Range Percent Splice Strand
X 10406353..10406700 462..809 100 -> Plus
X 10386512..10386563 17..68 100 -> Plus
X 10388443..10388835 69..461 100 -> Plus
X 10406762..10407105 810..1153 100 -> Plus
X 10407166..10407300 1154..1288 100 -> Plus
X 10407366..10407470 1289..1393 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:41 Download gff for BS07406.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10280545..10280596 17..68 100 -> Plus
arm_X 10282476..10282868 69..461 100 -> Plus
arm_X 10300386..10300733 462..809 100 -> Plus
arm_X 10300795..10301138 810..1153 100 -> Plus
arm_X 10301199..10301333 1154..1288 100 -> Plus
arm_X 10301399..10301503 1289..1393 100   Plus

BS07406.pep Sequence

Translation from 16 to 1401

> BS07406.pep
MGDFDLNVDSLIQRLLENFKKQKEAEEHAQKLLIAQQLAAAGGASGASAT
SPTSSSNYSSMAAVASFGSGYGSGSGAGAPGAGAGPGSSHDPLDDLTEQQ
RRLLQQYSISPPSETMISADGDQITVHHPREEPKKSRLKLRDFFVAEFVR
SCRTGKQVQMTEAEVRGLCLKSREIFLQQPILLELEAPLIICGDIHGQYT
DLLRLFEYGGFPPAANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFL
LRGNHECASINRIYGFYDECKRRYNVKLWKTFTDCFNCLPVAAIIDEKIF
CCHGGLSPDLQGMEQIRRLMRPTDVPDTGLLCDLLWSDPDKDVQGWGEND
RGVSFTFGVDVVSKFLNRHELDLICRAHQVVEDGYEFFARRQLVTLFSAP
NYCGEFDNAGGMMTVDDTLMCSFQILKPSEKKAKYLYSGMNSSRPTTPQR
SAPMLATNKKK*

BS07406.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
flw-PA 461 CG2096-PA 1..461 1..461 2434 100 Plus
flw-PC 330 CG2096-PC 18..330 149..461 1684 99.7 Plus
flw-PB 330 CG2096-PB 18..330 149..461 1684 99.7 Plus
Pp1alpha-96A-PB 327 CG6593-PB 17..327 149..461 1409 83.1 Plus
Pp1alpha-96A-PA 327 CG6593-PA 17..327 149..461 1409 83.1 Plus