Clone BS07407 Report

Search the DGRC for BS07407

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG9162-RA
Protein status:BS07407.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07407.5prime Sequence

402 bp (401 high quality bases) assembled on 2006-01-06

> BS07407.5prime
GAAGTTATCAGTCGACATGAAGAAGAAGAGAGCACACACTCATTCACTCA
CTCACGCACACACACAAGTGCAGGCCACGCGCAGCAGAAAGGCAAACAGC
GGAAAATCGAAAAATCAGGCGGCAAGACCGCAACAACTGCAGAGAAGCAT
GGATGCAGAGAGGCGGAGTGCCGGGAAGTGCTGTCTAGCTATTATAAGCC
GTTCTATAGTTGGGCGACGGAGTGTGAGCGAGCGAAGTGGTGTGGGGGAG
GGGTGCAGCCAGCATGTGCAGGCGATAAATGCAACGTGTAATGTGGGGAG
GCAGTGCACGGGTTTTCGACATCCGATGTCCATTGCAAATGGAAGAGGAC
GTGCAATGGTTTGCGATGCACGTGTTGGCGGTCAATGAAAGCTTTCTAGA
CC

BS07407.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG9162-PA 372 CG9162-RA 1..372 17..388 1860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 18:59:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6078800..6079172 17..389 1865 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:59:11 has no hits.

BS07407.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:55 Download gff for BS07407.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9162-PA 1..372 17..388 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:44 Download gff for BS07407.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9162-PA 1..372 17..388 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:42:59 Download gff for BS07407.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6078800..6079172 17..389 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:42:59 Download gff for BS07407.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6078800..6079172 17..389 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 20:07:06 Download gff for BS07407.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6078800..6079172 17..389 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 20:07:06 Download gff for BS07407.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6078800..6079172 17..389 100   Plus

BS07407.3prime Sequence

402 bp (401 high quality bases) assembled on 2006-01-06

> BS07407.3prime
ATGGTCTAGAAAGCTTTCATTGACCGCCAACACGTGCATCGCAAACCATT
GCACGTCCTCTTCCATTTGCAATGGACATCGGATGTCGAAAACCCGTGCA
CTGCCTCCCCACATTACACGTTGCATTTATCGCCTGCACATGCTGGCTGC
ACCCCTCCCCCACACCACTTCGCTCGCTCACACTCCGTCGCCCAACTATA
GAACGGCTTATAATAGCTAGACAGCACTTCCCGGCACTCCGCCTCTCTGC
ATCCATGCTTCTCTGCAGTTGTTGCGGTCTTGCCGCCTGATTTTTCGATT
TTCCGCTGTTTGCCTTTCTGCTGCGCGTGGCCTGCACTTGTGTGTGTGCG
TGAGTGAGTGAATGAGTGTGTGCTCTCTTCTTCTTCATGTCGACTGATAA
CT

BS07407.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG9162-PA 372 CG9162-RA 1..372 388..17 1860 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-04 10:31:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:31:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6078800..6079172 388..16 1865 100 Minus
Blast to na_te.dros performed on 2015-02-04 10:31:38 has no hits.

BS07407.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:54 Download gff for BS07407.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9162-PA 1..372 17..388 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:43 Download gff for BS07407.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9162-PA 1..372 17..388 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:37:42 Download gff for BS07407.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6078800..6079172 16..388 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:37:42 Download gff for BS07407.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6078800..6079172 16..388 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:26:26 Download gff for BS07407.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6078800..6079172 16..388 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:26:26 Download gff for BS07407.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6078800..6079172 16..388 100   Minus

BS07407.complete Sequence

404 bp (404 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635846

> BS07407.complete
GAAGTTATCAGTCGACATGAAGAAGAAGAGAGCACACACTCATTCACTCA
CTCACGCACACACACAAGTGCAGGCCACGCGCAGCAGAAAGGCAAACAGC
GGAAAATCGAAAAATCAGGCGGCAAGACCGCAACAACTGCAGAGAAGCAT
GGATGCAGAGAGGCGGAGTGCCGGGAAGTGCTGTCTAGCTATTATAAGCC
GTTCTATAGTTGGGCGACGGAGTGTGAGCGAGCGAAGTGGTGTGGGGGAG
GGGTGCAGCCAGCATGTGCAGGCGATAAATGCAACGTGTAATGTGGGGAG
GCAGTGCACGGGTTTTCGACATCCGATGTCCATTGCAAATGGAAGAGGAC
GTGCAATGGTTTGCGATGCACGTGTTGGCGGTCAATGAAAGCTTTCTAGA
CCAT

BS07407.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-28 00:59:16 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 00:59:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6078800..6079172 17..389 1865 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:59:15 has no hits.

BS07407.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:59 Download gff for BS07407.complete
Subject Subject Range Query Range Percent Splice Strand
CG9162-RA 1..372 17..388 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:45 Download gff for BS07407.complete
Subject Subject Range Query Range Percent Splice Strand
CG9162-RA 303..675 17..389 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:59 Download gff for BS07407.complete
Subject Subject Range Query Range Percent Splice Strand
CG9162-RA 303..675 17..389 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:47 Download gff for BS07407.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6078800..6079170 17..387 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:47 Download gff for BS07407.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6078800..6079170 17..387 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:49 Download gff for BS07407.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6078800..6079170 17..387 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:49 Download gff for BS07407.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6078800..6079170 17..387 100   Plus

BS07407.pep Sequence

Translation from 16 to 387

> BS07407.pep
MKKKRAHTHSLTHAHTQVQATRSRKANSGKSKNQAARPQQLQRSMDAERR
SAGKCCLAIISRSIVGRRSVSERSGVGEGCSQHVQAINATCNVGRQCTGF
RHPMSIANGRGRAMVCDARVGGQ*
Sequence BS07407.pep has no blast hits.