Clone Sequence Records
BS07407.5prime Sequence
402 bp (401 high quality bases) assembled on 2006-01-06
> BS07407.5prime
GAAGTTATCAGTCGACATGAAGAAGAAGAGAGCACACACTCATTCACTCA
CTCACGCACACACACAAGTGCAGGCCACGCGCAGCAGAAAGGCAAACAGC
GGAAAATCGAAAAATCAGGCGGCAAGACCGCAACAACTGCAGAGAAGCAT
GGATGCAGAGAGGCGGAGTGCCGGGAAGTGCTGTCTAGCTATTATAAGCC
GTTCTATAGTTGGGCGACGGAGTGTGAGCGAGCGAAGTGGTGTGGGGGAG
GGGTGCAGCCAGCATGTGCAGGCGATAAATGCAACGTGTAATGTGGGGAG
GCAGTGCACGGGTTTTCGACATCCGATGTCCATTGCAAATGGAAGAGGAC
GTGCAATGGTTTGCGATGCACGTGTTGGCGGTCAATGAAAGCTTTCTAGA
CC
BS07407.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9162-PA | 372 | CG9162-RA | 1..372 | 17..388 | 1860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 18:59:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:59:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6078800..6079172 | 17..389 | 1865 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:59:11 has no hits.
BS07407.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:55 Download gff for
BS07407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9162-PA | 1..372 | 17..388 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:44 Download gff for
BS07407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9162-PA | 1..372 | 17..388 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:42:59 Download gff for
BS07407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6078800..6079172 | 17..389 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:42:59 Download gff for
BS07407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6078800..6079172 | 17..389 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 20:07:06 Download gff for
BS07407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6078800..6079172 | 17..389 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 20:07:06 Download gff for
BS07407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6078800..6079172 | 17..389 | 100 | | Plus |
BS07407.3prime Sequence
402 bp (401 high quality bases) assembled on 2006-01-06
> BS07407.3prime
ATGGTCTAGAAAGCTTTCATTGACCGCCAACACGTGCATCGCAAACCATT
GCACGTCCTCTTCCATTTGCAATGGACATCGGATGTCGAAAACCCGTGCA
CTGCCTCCCCACATTACACGTTGCATTTATCGCCTGCACATGCTGGCTGC
ACCCCTCCCCCACACCACTTCGCTCGCTCACACTCCGTCGCCCAACTATA
GAACGGCTTATAATAGCTAGACAGCACTTCCCGGCACTCCGCCTCTCTGC
ATCCATGCTTCTCTGCAGTTGTTGCGGTCTTGCCGCCTGATTTTTCGATT
TTCCGCTGTTTGCCTTTCTGCTGCGCGTGGCCTGCACTTGTGTGTGTGCG
TGAGTGAGTGAATGAGTGTGTGCTCTCTTCTTCTTCATGTCGACTGATAA
CT
BS07407.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9162-PA | 372 | CG9162-RA | 1..372 | 388..17 | 1860 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-04 10:31:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:31:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6078800..6079172 | 388..16 | 1865 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 10:31:38 has no hits.
BS07407.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:54 Download gff for
BS07407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9162-PA | 1..372 | 17..388 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:43 Download gff for
BS07407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9162-PA | 1..372 | 17..388 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:37:42 Download gff for
BS07407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6078800..6079172 | 16..388 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:37:42 Download gff for
BS07407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6078800..6079172 | 16..388 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:26:26 Download gff for
BS07407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6078800..6079172 | 16..388 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:26:26 Download gff for
BS07407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6078800..6079172 | 16..388 | 100 | | Minus |
BS07407.complete Sequence
404 bp (404 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635846
> BS07407.complete
GAAGTTATCAGTCGACATGAAGAAGAAGAGAGCACACACTCATTCACTCA
CTCACGCACACACACAAGTGCAGGCCACGCGCAGCAGAAAGGCAAACAGC
GGAAAATCGAAAAATCAGGCGGCAAGACCGCAACAACTGCAGAGAAGCAT
GGATGCAGAGAGGCGGAGTGCCGGGAAGTGCTGTCTAGCTATTATAAGCC
GTTCTATAGTTGGGCGACGGAGTGTGAGCGAGCGAAGTGGTGTGGGGGAG
GGGTGCAGCCAGCATGTGCAGGCGATAAATGCAACGTGTAATGTGGGGAG
GCAGTGCACGGGTTTTCGACATCCGATGTCCATTGCAAATGGAAGAGGAC
GTGCAATGGTTTGCGATGCACGTGTTGGCGGTCAATGAAAGCTTTCTAGA
CCAT
BS07407.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-28 00:59:16 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 00:59:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:59:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6078800..6079172 | 17..389 | 1865 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:59:15 has no hits.
BS07407.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:59 Download gff for
BS07407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9162-RA | 1..372 | 17..388 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:45 Download gff for
BS07407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9162-RA | 303..675 | 17..389 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:59 Download gff for
BS07407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9162-RA | 303..675 | 17..389 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:47 Download gff for
BS07407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6078800..6079170 | 17..387 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:47 Download gff for
BS07407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6078800..6079170 | 17..387 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:49 Download gff for
BS07407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6078800..6079170 | 17..387 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:49 Download gff for
BS07407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6078800..6079170 | 17..387 | 100 | | Plus |
BS07407.pep Sequence
Translation from 16 to 387
> BS07407.pep
MKKKRAHTHSLTHAHTQVQATRSRKANSGKSKNQAARPQQLQRSMDAERR
SAGKCCLAIISRSIVGRRSVSERSGVGEGCSQHVQAINATCNVGRQCTGF
RHPMSIANGRGRAMVCDARVGGQ*
Sequence BS07407.pep has no blast hits.