Clone Sequence Records
BS07408.3prime Sequence
865 bp (820 high quality bases) assembled on 2006-01-06
> BS07408.3prime
ATGGTCTAGAAAGCTTCTAGTCCTCCAGCGTTACGTTGCGGAACAGATAG
GACATGGACTCCTTGTTGTGAATGCGGCGAATGGCCTCAGCGATCAGAAT
GGAGATGTCGATCGTCTTGATCTTATGGCACTGCAGCTTTTGGATCTCGT
GTGGAATGGTATTGGTTACAACGATCTCATCGATGGGCGACTCGTCCAGC
TGACGCGGTGCATCTGAGCTAAGCAGACCATGCGTGGCCAGCACGTATAT
CTTGCAGGCACCGTTCTCCTTCAGCATCTCAGCGGCGGCCACGAAGGCCT
GCACATCGTCGATCAGGTCATCCACCATGATGGCGATGCGTCCACTGACA
TCTCCCACAATGGTCAGCGGTGGCTTGACCTTGACAATGTGCTCCGGAAC
ACCCACCGAAACCGAGGTGGTTCGCTGGCGGGCGCTGCTGGTTGGGGCGT
GTTGTGGAGTAGAGTTTCTGGTCGGTGGAGGGGAGTACCGACCGTCGACC
TCATCGGCATCCGTTTCCTTCTGTTCGCCATGGATGACGGCCAGGCCAAG
ACGCAGTCGCTCGGCGTAGGAGTTGGCCTTCTTGGCCACGCCCGGATTGC
GAGCTACAATCACCGAATTTCGATAGTCGGGAATGCTCTCTTGAATATAT
TGGAGCAGAAAGGGCGACGCCCTCAGATTGTCCACGGGTATGTCAAAGAA
GCCCTGGATTTCCTTCTGGTGCAGATCCATAGTGATGATGTGCGTCAGGC
CAGAGGTGCACATCATCTTGGCCAGCAGCTTGGACACAATGCAGCCGCGC
TTGCGCATCTTGCACTGCTTGGAATAGGGCAAATATGGAATCACTCCCAC
GATCGAACGAGCCGA
BS07408.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2246-PD | 1104 | CG2246-RD | 256..1104 | 865..17 | 4245 | 100 | Minus |
| CG2246-PF | 1104 | CG2246-RF | 256..1104 | 865..17 | 4245 | 100 | Minus |
| CG2246-PB | 1164 | CG2246-RB | 316..1164 | 865..17 | 4245 | 100 | Minus |
| CG2246-PE | 1161 | CG2246-RE | 709..1161 | 469..17 | 2265 | 100 | Minus |
| CG2246-PA | 1221 | CG2246-RA | 769..1221 | 469..17 | 2265 | 100 | Minus |
| CG2246-PC | 1161 | CG2246-RC | 709..1161 | 469..17 | 2265 | 100 | Minus |
| CG2246-PE | 1161 | CG2246-RE | 256..653 | 865..468 | 1990 | 100 | Minus |
| CG2246-PA | 1221 | CG2246-RA | 316..713 | 865..468 | 1990 | 100 | Minus |
| CG2246-PC | 1161 | CG2246-RC | 256..653 | 865..468 | 1990 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:10:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2246-RG | 1584 | CG2246-RG | 585..1433 | 865..17 | 4245 | 100 | Minus |
| CG2246-RM | 1630 | CG2246-RM | 491..1339 | 865..17 | 4245 | 100 | Minus |
| CG2246-RL | 1495 | CG2246-RL | 356..1204 | 865..17 | 4245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:10:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30595040..30595270 | 635..865 | 1155 | 100 | Plus |
| 3R | 32079331 | 3R | 30594818..30594984 | 468..634 | 835 | 100 | Plus |
| 3R | 32079331 | 3R | 30593262..30593422 | 17..177 | 805 | 100 | Plus |
| 3R | 32079331 | 3R | 30593489..30593636 | 176..323 | 740 | 100 | Plus |
| 3R | 32079331 | 3R | 30593704..30593851 | 322..469 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 12:10:36 has no hits.
BS07408.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:56 Download gff for
BS07408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2246-PD | 257..1104 | 17..864 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:46 Download gff for
BS07408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2246-PB | 317..1164 | 17..864 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:47:14 Download gff for
BS07408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2246-RL | 357..1204 | 17..864 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:39:05 Download gff for
BS07408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2246-RL | 357..1204 | 17..864 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:39:05 Download gff for
BS07408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30593262..30593420 | 17..175 | 100 | <- | Plus |
| 3R | 30593489..30593635 | 176..322 | 100 | <- | Plus |
| 3R | 30593705..30593849 | 323..467 | 100 | <- | Plus |
| 3R | 30594818..30594984 | 468..634 | 100 | <- | Plus |
| 3R | 30595040..30595269 | 635..864 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:47:14 Download gff for
BS07408.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26418984..26419142 | 17..175 | 100 | <- | Plus |
| arm_3R | 26419211..26419357 | 176..322 | 100 | <- | Plus |
| arm_3R | 26419427..26419571 | 323..467 | 100 | <- | Plus |
| arm_3R | 26420540..26420706 | 468..634 | 100 | <- | Plus |
| arm_3R | 26420762..26420991 | 635..864 | 100 | | Plus |
BS07408.5prime Sequence
925 bp (826 high quality bases) assembled on 2006-01-06
> BS07408.5prime
GAAGTTATCAGTCGACATGGATAACACCTCCACCTCGGACATTGTCATCA
TCAATGGCAACTCGCATCCGGATCTGGCCAATATGGTGGCCGAGCGTATG
GGAATCAAGAATGGGGGCTGCTCCGTGTTCCACAAGTCCAATAGGGAGAC
TATTGTGGAGATCAGTGATTCCGTTAGAGGCAAGGACATCTACATCATCC
AAACGGGCACAAAGGATGCCAACAATAATATCATGGAGCTTCTGATTATG
GCCTACGCCTGCAAGACTTCCTCGGCTCGTTCGATCGTGGGAGTGATTCC
ATATTTGCCCTATTCCAAGCAGTGCAAGATGCGCAAGCGCGGCTGCATTG
TGTCCAAGCTGCTGGCCAAGATGATGTGCACCTCTGGCCTGACGCACATC
ATCACTATGGATCTGCACCAGAAGGAAATCCAGGGCTTCTTTGACATACC
CGTGGACAATCTGAGGGCGTCGCCCTTTCTGCTCCAATATATTCAAGAGA
GCATTCCCGACTATCGAAATTCGGTGATTGTAGCTCGCAATCCGGGCGTG
GCCAAGAAGGCCAACTCCTACGCCGAGCGACTGCGTCTTGGCCTGGCCGT
CATCCATGGCGAACAGAAGGAAACGGATGCCGATGAGGTCGACGGTCGGT
ACTCCCCTCCACCGACCAGAAACTCTACTCCACAACACGCCCCAACCAGC
AGCGCCCGCCAGCGAACCACCTCGGTTTCGGTGGGTGTTCCGGAGCACAT
TGTCAAGGTCAAGCCACCGCTGACCATTGTGGGAGATGTCAGTGGACGCA
TCGCCATCATGGTGGATGACCTGATCGACGATGTGCAGGCCTTCGTGGCC
GCCGCTGAGATGCTGAAGGAGAACGGTGCCTGCAAGATATACGTGCTGGC
CACGCATGGTCTGCTTAGCTCAGAT
BS07408.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2246-PB | 1164 | CG2246-RB | 57..969 | 13..925 | 4565 | 100 | Plus |
| CG2246-PD | 1104 | CG2246-RD | 1..909 | 17..925 | 4545 | 100 | Plus |
| CG2246-PF | 1104 | CG2246-RF | 1..909 | 17..925 | 4545 | 100 | Plus |
| CG2246-PA | 1221 | CG2246-RA | 57..713 | 13..669 | 3285 | 100 | Plus |
| CG2246-PE | 1161 | CG2246-RE | 1..653 | 17..669 | 3265 | 100 | Plus |
| CG2246-PC | 1161 | CG2246-RC | 1..653 | 17..669 | 3265 | 100 | Plus |
| CG2246-PA | 1221 | CG2246-RA | 769..1026 | 668..925 | 1290 | 100 | Plus |
| CG2246-PE | 1161 | CG2246-RE | 709..966 | 668..925 | 1290 | 100 | Plus |
| CG2246-PC | 1161 | CG2246-RC | 709..966 | 668..925 | 1290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:12:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2246-RG | 1584 | CG2246-RG | 326..1238 | 13..925 | 4565 | 100 | Plus |
| CG2246-RM | 1630 | CG2246-RM | 232..1144 | 13..925 | 4565 | 100 | Plus |
| CG2246-RL | 1495 | CG2246-RL | 97..1009 | 13..925 | 4565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:12:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30595040..30595328 | 502..214 | 1445 | 100 | Minus |
| 3R | 32079331 | 3R | 30595389..30595590 | 214..13 | 1010 | 100 | Minus |
| 3R | 32079331 | 3R | 30594818..30594984 | 669..503 | 835 | 100 | Minus |
| 3R | 32079331 | 3R | 30593704..30593851 | 815..668 | 740 | 100 | Minus |
| 3R | 32079331 | 3R | 30593525..30593636 | 925..814 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 04:12:07 has no hits.
BS07408.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:57 Download gff for
BS07408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2246-PB | 55..969 | 10..925 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:47 Download gff for
BS07408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2246-PB | 55..969 | 10..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:47:17 Download gff for
BS07408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2246-RL | 95..1009 | 10..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:22:10 Download gff for
BS07408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2246-RL | 95..1009 | 10..925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:22:10 Download gff for
BS07408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30593525..30593635 | 815..925 | 100 | <- | Minus |
| 3R | 30593705..30593849 | 670..814 | 100 | <- | Minus |
| 3R | 30594818..30594984 | 503..669 | 100 | <- | Minus |
| 3R | 30595040..30595328 | 214..502 | 100 | <- | Minus |
| 3R | 30595390..30595592 | 10..213 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:47:17 Download gff for
BS07408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26420540..26420706 | 503..669 | 100 | <- | Minus |
| arm_3R | 26421112..26421314 | 10..213 | 99 | | Minus |
| arm_3R | 26419247..26419357 | 815..925 | 100 | <- | Minus |
| arm_3R | 26419427..26419571 | 670..814 | 100 | <- | Minus |
| arm_3R | 26420762..26421050 | 214..502 | 100 | <- | Minus |
BS07408.complete Sequence
1136 bp (1136 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635847
> BS07408.complete
GAAGTTATCAGTCGACATGGATAACACCTCCACCTCGGACATTGTCATCA
TCAATGGCAACTCGCATCCGGATCTGGCCAATATGGTGGCCGAGCGTATG
GGAATCAAGAATGGGGGCTGCTCCGTGTTCCACAAGTCCAATAGGGAGAC
TATTGTGGAGATCAGTGATTCCGTTAGAGGCAAGGACATCTACATCATCC
AAACGGGCACAAAGGATGCCAACAATAATATCATGGAGCTTCTGATTATG
GCCTACGCCTGCAAGACTTCCTCGGCTCGTTCGATCGTGGGAGTGATTCC
ATATTTGCCCTATTCCAAGCAGTGCAAGATGCGCAAGCGCGGCTGCATTG
TGTCCAAGCTGCTGGCCAAGATGATGTGCACCTCTGGCCTGACGCACATC
ATCACTATGGATCTGCACCAGAAGGAAATCCAGGGCTTCTTTGACATACC
CGTGGACAATCTGAGGGCGTCGCCCTTTCTGCTCCAATATATTCAAGAGA
GCATTCCCGACTATCGAAATTCGGTGATTGTAGCTCGCAATCCGGGCGTG
GCCAAGAAGGCCAACTCCTACGCCGAGCGACTGCGTCTTGGCCTGGCCGT
CATCCATGGCGAACAGAAGGAAACGGATGCCGATGAGGTCGACGGTCGGT
ACTCCCCTCCACCGACCAGAAACTCTACTCCACAACACGCCCCAACCAGC
AGCGCCCGCCAGCGAACCACCTCGGTTTCGGTGGGTGTTCCGGAGCACAT
TGTCAAGGTCAAGCCACCGCTGACCATTGTGGGAGATGTCAGTGGACGCA
TCGCCATCATGGTGGATGACCTGATCGACGATGTGCAGGCCTTCGTGGCC
GCCGCTGAGATGCTGAAGGAGAACGGTGCCTGCAAGATATACGTGCTGGC
CACGCATGGTCTGCTTAGCTCAGATGCACCGCGTCAGCTGGACGAGTCGC
CCATCGATGAGATCGTTGTAACCAATACCATTCCACACGAGATCCAAAAG
CTGCAGTGCCATAAGATCAAGACGATCGACATCTCCATTCTGATCGCTGA
GGCCATTCGCCGCATTCACAACAAGGAGTCCATGTCCTATCTGTTCCGCA
ACGTAACGCTGGAGGACTAGAAGCTTTCTAGACCAT
BS07408.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:50:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2246-RG | 1164 | CG2246-PG | 57..1164 | 13..1120 | 5540 | 100 | Plus |
| CG2246-RJ | 1158 | CG2246-PJ | 51..1158 | 13..1120 | 5540 | 100 | Plus |
| CG2246-RB | 1164 | CG2246-PB | 57..1164 | 13..1120 | 5540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:50:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2246-RG | 1584 | CG2246-RG | 326..1433 | 13..1120 | 5540 | 100 | Plus |
| CG2246-RM | 1630 | CG2246-RM | 232..1339 | 13..1120 | 5540 | 100 | Plus |
| CG2246-RL | 1495 | CG2246-RL | 97..1204 | 13..1120 | 5540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:50:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30595040..30595328 | 502..214 | 1445 | 100 | Minus |
| 3R | 32079331 | 3R | 30595389..30595590 | 214..13 | 1010 | 100 | Minus |
| 3R | 32079331 | 3R | 30594818..30594984 | 669..503 | 835 | 100 | Minus |
| 3R | 32079331 | 3R | 30593262..30593422 | 1120..960 | 805 | 100 | Minus |
| 3R | 32079331 | 3R | 30593489..30593636 | 961..814 | 740 | 100 | Minus |
| 3R | 32079331 | 3R | 30593704..30593851 | 815..668 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:50:27 has no hits.
BS07408.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:33 Download gff for
BS07408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2246-RB | 55..1164 | 10..1120 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:53:36 Download gff for
BS07408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2246-RC | 824..1274 | 670..1120 | 100 | | Plus |
| CG2246-RC | 108..765 | 10..669 | 99 | -> | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:17 Download gff for
BS07408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2246-RL | 101..1204 | 17..1120 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:33 Download gff for
BS07408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2246-RC | 108..765 | 10..669 | 99 | -> | Plus |
| CG2246-RC | 824..1274 | 670..1120 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:01 Download gff for
BS07408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2246-RL | 101..1204 | 17..1120 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:01 Download gff for
BS07408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30595390..30595586 | 17..213 | 100 | | Minus |
| 3R | 30593262..30593420 | 962..1120 | 100 | <- | Minus |
| 3R | 30593489..30593635 | 815..961 | 100 | <- | Minus |
| 3R | 30593705..30593849 | 670..814 | 100 | <- | Minus |
| 3R | 30594818..30594984 | 503..669 | 100 | <- | Minus |
| 3R | 30595040..30595328 | 214..502 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:17 Download gff for
BS07408.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26421112..26421308 | 17..213 | 100 | | Minus |
| arm_3R | 26418984..26419142 | 962..1120 | 100 | <- | Minus |
| arm_3R | 26419211..26419357 | 815..961 | 100 | <- | Minus |
| arm_3R | 26419427..26419571 | 670..814 | 100 | <- | Minus |
| arm_3R | 26420540..26420706 | 503..669 | 100 | <- | Minus |
| arm_3R | 26420762..26421050 | 214..502 | 100 | <- | Minus |
BS07408.pep Sequence
Translation from 16 to 1119
> BS07408.pep
MDNTSTSDIVIINGNSHPDLANMVAERMGIKNGGCSVFHKSNRETIVEIS
DSVRGKDIYIIQTGTKDANNNIMELLIMAYACKTSSARSIVGVIPYLPYS
KQCKMRKRGCIVSKLLAKMMCTSGLTHIITMDLHQKEIQGFFDIPVDNLR
ASPFLLQYIQESIPDYRNSVIVARNPGVAKKANSYAERLRLGLAVIHGEQ
KETDADEVDGRYSPPPTRNSTPQHAPTSSARQRTTSVSVGVPEHIVKVKP
PLTIVGDVSGRIAIMVDDLIDDVQAFVAAAEMLKENGACKIYVLATHGLL
SSDAPRQLDESPIDEIVVTNTIPHEIQKLQCHKIKTIDISILIAEAIRRI
HNKESMSYLFRNVTLED*
BS07408.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2246-PM | 367 | CG2246-PM | 1..367 | 1..367 | 1870 | 100 | Plus |
| CG2246-PL | 367 | CG2246-PL | 1..367 | 1..367 | 1870 | 100 | Plus |
| CG2246-PK | 367 | CG2246-PK | 1..367 | 1..367 | 1870 | 100 | Plus |
| CG2246-PF | 367 | CG2246-PF | 1..367 | 1..367 | 1870 | 100 | Plus |
| CG2246-PD | 367 | CG2246-PD | 1..367 | 1..367 | 1870 | 100 | Plus |
