Clone Sequence Records
BS07409.3prime Sequence
907 bp (809 high quality bases) assembled on 2006-01-06
> BS07409.3prime
ATGGTCTAGAAAGCTTTCATATTTGGTCAGTTGTGGCGCAAAACTTCCAG
GTGCTGACCTTCTCTTTGAAACTATAGTTGCCCAGGAGATTCTTAAACGC
CTTAAAAAGCCTTGTTAGCGGACTATTGCGCTGCAGTCCGAGGAGATCTC
CTTGAAGAGGCTGCACATCCAGGCGCAACTCTTTGTAATCCTCGCTGGCC
TGCAGCGTGAAATAGCCGCGCAAATTGACTGCGTACTGCGGATTTCCCAT
TCTCGTCTTCGTAAACTCAATCGTCTGCTGCAACTGGTGGGCGAAGAAAG
ATTGACCGGCGCCACGTTGGAAAGAGCGTCCTGTCCAAGTGTCGTAAGAA
ATGCTGATTAGCCACTTGTAGTGTTTCGGCTCCTTCGATTCTTTAAGTTC
CACATTCAAAGCATACAGTTGAGTTAGCACATCCTTTATAGTGTCCACGT
AGCAGATCAACCAGTAGTAATATATGCTCTGATCGTTCTCCGTGTTCTTG
ACCAGCACAATGGAGCGCAGGCATTTGACATCGTTTGTGGTGGGCGTGAT
GACGTGTGATCGCACTAAGGGCGGTGTCCCACAAACTCCGACTTCGGCGA
CTTTTGTTTCTTGTGTCTCATCGACGATTGGCGGTTGCACATGGGCGTTT
TCAATTTTTTGTTGCTTTCGCGGCGTAGCCCTTTCTGATCTTTTATCTGC
CACTATTTTGTCGGCTACTAACTTATCCGCCAGGCCAAATAATAGGTAGT
CGTATAGCTTCTCTGGTTGCGAAGTTAGTTCCTGATCGCTGCACGCTTGA
GCTGCCAGGACTAGGCATTGTCTAAAGTAACATAAATTTGAAATGGACAC
TGATTTGGCCACGTTGCGACTGAGCTCGAAGGGATCCTGTACGCACATGG
CCCTATC
BS07409.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7163-PA | 1980 | mkg-p-RA | 1090..1980 | 907..17 | 4455 | 100 | Minus |
| CG7163-PB | 1980 | mkg-p-RB | 1090..1980 | 907..17 | 4455 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:59:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33057-RB | 3058 | CG33057-RB | 1859..2750 | 907..16 | 4460 | 100 | Minus |
| CG33057-RA | 3110 | CG33057-RA | 1911..2802 | 907..16 | 4460 | 100 | Minus |
| mkg-p-RD | 3058 | CG7163-RD | 1859..2750 | 907..16 | 4460 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:59:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8402476..8403367 | 16..907 | 4460 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:59:46 has no hits.
BS07409.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:58 Download gff for
BS07409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mkg-p-PB | 1090..1980 | 17..907 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:49 Download gff for
BS07409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7163-PB | 1090..1980 | 17..907 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:00:44 Download gff for
BS07409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33057-RA | 1911..2806 | 9..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:16:15 Download gff for
BS07409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mkg-p-RD | 1859..2754 | 9..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:16:15 Download gff for
BS07409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8402472..8403367 | 9..907 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:00:44 Download gff for
BS07409.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8395572..8396467 | 9..907 | 99 | | Plus |
BS07409.5prime Sequence
875 bp (760 high quality bases) assembled on 2006-01-06
> BS07409.5prime
GAAGTTATCAGTCGACATGCCGGCCCCTGCCTCGGAATCAACTTCTCCGC
CTGGGGATGGTGACGGTAATCTTGTGCTTTGCATGGTATGCGCTGCTCCC
TTCCGGAGTATGCAGGATTGCCTTGCCCACGAGCTGATCAAGCACGCCAG
CAAGCCACAAAAGCAACTGCGACAGCGATTGAACGCCATTACCAAGCTAT
TTAACAGCGCACAAAGCCAATCCGAGCGTCAAGAGCTGCGGGAGGCTCTC
GAATGGTCCGAGTCCGGCGGGCACTTGTGCACCGTATTGAATTTCTTTGC
TTGTGATCTCGAAAATATGAAAACCTGCTTCGGGCACGTCCGGAACTGCA
TAGAGAAGGAGATGAGGGGCAGGGTTAGGGTGTTCCCCTTTGGTTCACTG
GTTACGGGTTTAGCACTGAAGGAGAGCGACATCGATTTGTTTCTGGAGCC
CAACGGCAACCAGCCACCATTGTTCCATAATCAGCTATACAACAAGACCT
CACACTTTTTACGAAGATCCAAATGCTTTGCGGATGTCTTCACCATTCGT
CATGCCAGCGTGCCCATCATTAGATGTAAGCATCAGCTCACCGGACTCAA
CATAGACATCAATATGTCAAATCCGAATAGCATATATAACTCCCGATTTG
TGGGCGAACTGATGTTTCGCAATGAGCGGATACGCGAGCTCTGCCTGTTT
TTGAAAATTTGGGCCAAGAAGCTAAAATTGATTAGTCATGGCGGCATGAC
AAGCTATTGCTTAATATCCTTGATCATCGTTAACTTGCAAGTGAATCGAC
TAGTGCCCTCCGTCAAAGAGCTCCAGTCACTCTGTCCACCGGTTATTTTG
TCGGGCGTTAACTATGCCTACAGCC
BS07409.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7163-PA | 1980 | mkg-p-RA | 1..859 | 17..875 | 4295 | 100 | Plus |
| CG7163-PB | 1980 | mkg-p-RB | 1..859 | 17..875 | 4295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:22:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33057-RB | 3058 | CG33057-RB | 770..1628 | 17..875 | 4295 | 100 | Plus |
| mkg-p-RD | 3058 | CG7163-RD | 770..1628 | 17..875 | 4295 | 100 | Plus |
| mkg-p-RB | 2337 | CG7163-RB | 49..907 | 17..875 | 4295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:21:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8403598..8404051 | 875..422 | 2270 | 100 | Minus |
| 3L | 28110227 | 3L | 8404103..8404508 | 422..17 | 2030 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:22:00 has no hits.
BS07409.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:11:59 Download gff for
BS07409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mkg-p-PB | 1..859 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:50 Download gff for
BS07409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7163-PB | 1..859 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:23:30 Download gff for
BS07409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mkg-p-RA | 67..925 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:56:09 Download gff for
BS07409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mkg-p-RB | 44..907 | 9..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:56:09 Download gff for
BS07409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8403598..8404050 | 423..875 | 100 | <- | Minus |
| 3L | 8404103..8404513 | 9..422 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:23:30 Download gff for
BS07409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8396698..8397150 | 423..875 | 100 | <- | Minus |
| arm_3L | 8397203..8397613 | 9..422 | 99 | | Minus |
BS07409.complete Sequence
2012 bp assembled on 2008-08-14
GenBank Submission: FJ635848
> BS07409.complete
GAAGTTATCAGTCGACATGCCGGCCCCTGCCTCGGAATCAACTTCTCCGC
CTGGGGATGGTGACGGTAATCTTGTGCTTTGCATGGTATGCGCTGCTCCC
TTCCGGAGTATGCAGGATTGCCTTGCCCACGAGCTGATCAAGCACGCCAG
CAAGCCACAAAAGCAACTGCGACAGCGATTGAACGCCATTACCAAGCTAT
TTAACAGCGCACAAAGCCAATCCGAGCGTCAAGAGCTGCGGGAGGCTCTC
GAATGGTCCGAGTCCGGCGGGCACTTGTGCACCGTATTGAATTTCTTTGC
TTGTGATCTCGAAAATATGAAAACCTGCTTCGGGCACGTCCGGAACTGCA
TAGAGAAGGAGATGAGGGGCAGGGTTAGGGTGTTCCCCTTTGGTTCACTG
GTTACGGGTTTAGCACTGAAGGAGAGCGACATCGATTTGTTTCTGGAGCC
CAACGGCAACCAGCCACCATTGTTCCATAATCAGCTATACAACAAGACCT
CACACTTTTTACGAAGATCCAAATGCTTTGCGGATGTCTTCACCATTCGT
CATGCCAGCGTGCCCATCATTAGATGTAAGCATCAGCTCACCGGACTCAA
CATAGACATCAATATGTCAAATCCGAATAGCATATATAACTCCCGATTTG
TGGGCGAACTGATGTTTCGCAATGAGCGGATACGCGAGCTCTGCCTGTTT
TTGAAAATTTGGGCCAAGAAGCTAAAATTGATTAGTCATGGCGGCATGAC
AAGCTATTGCTTAATATCCTTGATCATCGTTAACTTGCAAGTGAATCGAC
TAGTGCCCTCCGTCAAAGAGCTCCAGTCACTCTGTCCACCGGTTATTTTG
TCGGGCGTTAACTATGCCTACAGCCTGGACCTAACGCCGCCGATCCCAGC
ACGGCTCACCACGCTGGATTTACTTAAAAACTTCTTCATATACTACTGCA
CTGTCAACTTTGACAAAAGTGTATTGAGTCCGTTTCTGGGCGGCTGTGTG
GACAAGGAGACAACACTGGGCATGCCGGGAGGTTTTCCCGAGTACGATGA
GCAACAAAAGCTCGTGCATGATGCAATAGGTGCGCCGCCAGACGCTTTCC
AGCTGGATAGGGCCATGTGCGTACAGGATCCCTTCGAGCTCAGTCGCAAC
GTGGCCAAATCAGTGTCCATTTCAAATTTATGTTACTTTAGACAATGCCT
AGTCCTGGCAGCTCAAGCGTGCAGCGATCAGGAACTAACTTCGCAACCAG
AGAAGCTATACGACTACCTATTATTTGGCCTGGCGGATAAGTTAGTAGCC
GACAAAATAGTGGCAGATAAAAGATCAGAAAGGGCTACGCCGCGAAAGCA
ACAAAAAATTGAAAACGCCCATGTGCAACCGCCAATCGTCGATGAGACAC
AAGAAACAAAAGTCGCCGAAGTCGGAGTTTGTGGGACACCGCCCTTAGTG
CGATCACACGTCATCACGCCCACCACAAACGATGTCAAATGCCTGCGCTC
CATTGTGCTGGTCAAGAACACGGAGAACGATCAGAGCATATATTACTACT
GGTTGATCTGCTACGTGGACACTATAAAGGATGTGCTAACTCAACTGTAT
GCTTTGAATGTGGAACTTAAAGAATCGAAGGAGCCGAAACACTACAAGTG
GCTAATCAGCATTTCTTACGACACTTGGACAGGACGCTCTTTCCAACGTG
GCGCCGGTCAATCTTTCTTCGCCCACCAGTTGCAGCAGACGATTGAGTTT
ACGAAGACGAGAATGGGAAATCCGCAGTACGCAGTCAATTTGCGCGGCTA
TTTCACGCTGCAGGCCAGCGAGGATTACAAAGAGTTGCGCCTGGATGTGC
AGCCTCTTCAAGGAGATCTCCTCGGACTGCAGCGCAATAGTCCGCTAACA
AGGCTTTTTAAGGCGTTTAAGAATCTCCTGGGCAACTATAGTTTCAAAGA
GAAGGTCAGCACCTGGAAGTTTTGCGCCACAACTGACCAAATATGAAAGC
TTTCTAGACCAT
BS07409.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:50:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mkg-p-RD | 1980 | CG7163-PD | 1..1980 | 17..1996 | 9900 | 100 | Plus |
| mkg-p-RB | 1980 | CG7163-PB | 1..1980 | 17..1996 | 9900 | 100 | Plus |
| mkg-p-RA | 1980 | CG7163-PA | 1..1980 | 17..1996 | 9900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:50:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33057-RB | 3058 | CG33057-RB | 770..2750 | 17..1997 | 9905 | 100 | Plus |
| mkg-p-RD | 3058 | CG7163-RD | 770..2750 | 17..1997 | 9905 | 100 | Plus |
| mkg-p-RB | 2337 | CG7163-RB | 49..2029 | 17..1997 | 9905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:50:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8402476..8404051 | 1997..422 | 7880 | 100 | Minus |
| 3L | 28110227 | 3L | 8404103..8404508 | 422..17 | 2030 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:50:06 has no hits.
BS07409.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:51:03 Download gff for
BS07409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mkg-p-RB | 44..2033 | 9..2004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:33:58 Download gff for
BS07409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mkg-p-RA | 67..2045 | 17..1995 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:00:12 Download gff for
BS07409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mkg-p-RB | 49..2027 | 17..1995 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:16 Download gff for
BS07409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mkg-p-RB | 49..2027 | 17..1995 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:16 Download gff for
BS07409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8402478..8404050 | 423..1995 | 100 | <- | Minus |
| 3L | 8404103..8404508 | 17..422 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:33:58 Download gff for
BS07409.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8395578..8397150 | 423..1995 | 100 | <- | Minus |
| arm_3L | 8397203..8397608 | 17..422 | 100 | | Minus |
BS07409.pep Sequence
Translation from 16 to 1995
> BS07409.pep
MPAPASESTSPPGDGDGNLVLCMVCAAPFRSMQDCLAHELIKHASKPQKQ
LRQRLNAITKLFNSAQSQSERQELREALEWSESGGHLCTVLNFFACDLEN
MKTCFGHVRNCIEKEMRGRVRVFPFGSLVTGLALKESDIDLFLEPNGNQP
PLFHNQLYNKTSHFLRRSKCFADVFTIRHASVPIIRCKHQLTGLNIDINM
SNPNSIYNSRFVGELMFRNERIRELCLFLKIWAKKLKLISHGGMTSYCLI
SLIIVNLQVNRLVPSVKELQSLCPPVILSGVNYAYSLDLTPPIPARLTTL
DLLKNFFIYYCTVNFDKSVLSPFLGGCVDKETTLGMPGGFPEYDEQQKLV
HDAIGAPPDAFQLDRAMCVQDPFELSRNVAKSVSISNLCYFRQCLVLAAQ
ACSDQELTSQPEKLYDYLLFGLADKLVADKIVADKRSERATPRKQQKIEN
AHVQPPIVDETQETKVAEVGVCGTPPLVRSHVITPTTNDVKCLRSIVLVK
NTENDQSIYYYWLICYVDTIKDVLTQLYALNVELKESKEPKHYKWLISIS
YDTWTGRSFQRGAGQSFFAHQLQQTIEFTKTRMGNPQYAVNLRGYFTLQA
SEDYKELRLDVQPLQGDLLGLQRNSPLTRLFKAFKNLLGNYSFKEKVSTW
KFCATTDQI*
BS07409.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:20:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mkg-p-PD | 659 | CG7163-PD | 1..659 | 1..659 | 3469 | 100 | Plus |
| mkg-p-PB | 659 | CG7163-PB | 1..659 | 1..659 | 3469 | 100 | Plus |
| mkg-p-PA | 659 | CG7163-PA | 1..659 | 1..659 | 3469 | 100 | Plus |
| CG1091-PC | 563 | CG1091-PC | 260..532 | 120..384 | 224 | 27 | Plus |
| CG1091-PA | 505 | CG1091-PA | 205..474 | 120..384 | 222 | 27.1 | Plus |
