Clone BS07410 Report

Search the DGRC for BS07410

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG9106-RA
Protein status:BS07410.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07410.3prime Sequence

462 bp (461 high quality bases) assembled on 2006-01-06

> BS07410.3prime
ATGGTCTAGAAAGCTTTCAGTCGAACAGAACGTCCATCGGTATGCCATAA
ATCTCGGCCAGCTGCAGTTTGGTGTAGGCAACAACGCCGCTGGGACAGTA
GGCCATCGCCTCCTCCAGAGTGACCCACTTGGAGCTTGACTCACCGGCAC
ATACCACATGCAGATAGACGATACCATCGAACATCTCATGGCTGATGATG
CCCATCAGGTTGCTGGGGGTGCCGCTACTGACGTTTCCGGCGGTGTTGCC
ACTACCGTTACCATCACCGTTACCGTTACCGTTTCCGCTTCCGCTTCCGT
TTCCGCCAATGATGTTGCCGCTCTGGCTCCCAGCGCTGCTCATTCCATCG
CCGTTGCCACCGTCGCTGCCGCCACCGCTGCCGCCACCCACGCTGCTACC
GCTGGCATTGGCGTTCGAAGAGGTGGACGGATTCAGATTGATGACCATGT
CGACTGATAACT

BS07410.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9106-PA 432 CG9106-RA 1..432 448..17 2160 100 Minus
CG9106-PB 432 CG9106-RB 1..432 448..17 2160 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:53:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG9106-RB 1298 CG9106-RB 504..935 448..17 2160 100 Minus
CG9106-RA 1240 CG9106-RA 446..877 448..17 2160 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15271399..15271830 17..448 2160 100 Plus
Blast to na_te.dros performed 2015-02-12 03:53:38
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 620..717 285..385 165 64.4 Plus
TART-A 13424 TART-A 13424bp 11098..11129 404..373 115 84.4 Minus

BS07410.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:00 Download gff for BS07410.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9106-PB 1..432 17..448 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:52 Download gff for BS07410.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9106-PB 1..432 17..448 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:55:35 Download gff for BS07410.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9106-RA 442..877 17..456 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:47:10 Download gff for BS07410.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9106-RA 442..877 17..456 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:47:10 Download gff for BS07410.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15271399..15271834 17..456 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:55:35 Download gff for BS07410.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15165432..15165867 17..456 99   Plus

BS07410.5prime Sequence

462 bp (461 high quality bases) assembled on 2006-01-06

> BS07410.5prime
GAAGTTATCAGTCGACATGGTCATCAATCTGAATCCGTCCACCTCTTCGA
ACGCCAATGCCAGCGGTAGCAGCGTGGGTGGCGGCAGCGGTGGCGGCAGC
GACGGTGGCAACGGCGATGGAATGAGCAGCGCTGGGAGCCAGAGCGGCAA
CATCATTGGCGGAAACGGAAGCGGAAGCGGAAACGGTAACGGTAACGGTG
ATGGTAACGGTAGTGGCAACACCGCCGGAAACGTCAGTAGCGGCACCCCC
AGCAACCTGATGGGCATCATCAGCCATGAGATGTTCGATGGTATCGTCTA
TCTGCATGTGGTATGTGCCGGTGAGTCAAGCTCCAAGTGGGTCACTCTGG
AGGAGGCGATGGCCTACTGTCCCAGCGGCGTTGTTGCCTACACCAAACTG
CAGCTGGCCGAGATTTATGGCATACCGATGGACGTTCTGTTCGACTGAAA
GCTTTCTAGACC

BS07410.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG9106-PA 432 CG9106-RA 1..432 17..448 2160 100 Plus
CG9106-PB 432 CG9106-RB 1..432 17..448 2160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9106-RB 1298 CG9106-RB 504..935 17..448 2160 100 Plus
CG9106-RA 1240 CG9106-RA 446..877 17..448 2160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15271399..15271830 448..17 2160 100 Minus
Blast to na_te.dros performed 2015-02-12 07:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 620..717 180..80 165 64.4 Minus
TART-A 13424 TART-A 13424bp 11098..11129 61..92 115 84.4 Plus

BS07410.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:01 Download gff for BS07410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9106-PB 1..432 17..448 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:53 Download gff for BS07410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9106-PB 1..432 17..448 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:22:14 Download gff for BS07410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9106-RA 442..877 9..448 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:12:34 Download gff for BS07410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9106-RA 442..877 9..448 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:12:34 Download gff for BS07410.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15271399..15271834 9..448 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:22:14 Download gff for BS07410.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15165432..15165867 9..448 99   Minus

BS07410.complete Sequence

464 bp (464 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635849

> BS07410.complete
GAAGTTATCAGTCGACATGGTCATCAATCTGAATCCGTCCACCTCTTCGA
ACGCCAATGCCAGCGGTAGCAGCGTGGGTGGCGGCAGCGGTGGCGGCAGC
GACGGTGGCAACGGCGATGGAATGAGCAGCGCTGGGAGCCAGAGCGGCAA
CATCATTGGCGGAAACGGAAGCGGAAGCGGAAACGGTAACGGTAACGGTG
ATGGTAACGGTAGTGGCAACACCGCCGGAAACGTCAGTAGCGGCACCCCC
AGCAACCTGATGGGCATCATCAGCCATGAGATGTTCGATGGTATCGTCTA
TCTGCATGTGGTATGTGCCGGTGAGTCAAGCTCCAAGTGGGTCACTCTGG
AGGAGGCGATGGCCTACTGTCCCAGCGGCGTTGTTGCCTACACCAAACTG
CAGCTGGCCGAGATTTATGGCATACCGATGGACGTTCTGTTCGACTGAAA
GCTTTCTAGACCAT

BS07410.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9106-RB 432 CG9106-PB 1..432 17..448 2160 100 Plus
CG9106-RA 432 CG9106-PA 1..432 17..448 2160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9106-RB 1298 CG9106-RB 504..935 17..448 2160 100 Plus
CG9106-RA 1240 CG9106-RA 446..877 17..448 2160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15271399..15271830 448..17 2160 100 Minus
Blast to na_te.dros performed 2014-11-26 15:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 620..717 180..80 165 64.4 Minus
TART-A 13424 TART-A 13424bp 11098..11129 61..92 115 84.4 Plus

BS07410.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:02 Download gff for BS07410.complete
Subject Subject Range Query Range Percent Splice Strand
CG9106-RB 1..432 17..448 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:32:20 Download gff for BS07410.complete
Subject Subject Range Query Range Percent Splice Strand
CG9106-RA 442..877 9..448 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:47:03 Download gff for BS07410.complete
Subject Subject Range Query Range Percent Splice Strand
CG9106-RA 446..876 17..447 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:02 Download gff for BS07410.complete
Subject Subject Range Query Range Percent Splice Strand
CG9106-RA 442..877 9..448 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:59 Download gff for BS07410.complete
Subject Subject Range Query Range Percent Splice Strand
CG9106-RA 446..876 17..447 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:59 Download gff for BS07410.complete
Subject Subject Range Query Range Percent Splice Strand
X 15271400..15271830 17..447 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:47:03 Download gff for BS07410.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15165433..15165863 17..447 100   Minus

BS07410.pep Sequence

Translation from 16 to 447

> BS07410.pep
MVINLNPSTSSNANASGSSVGGGSGGGSDGGNGDGMSSAGSQSGNIIGGN
GSGSGNGNGNGDGNGSGNTAGNVSSGTPSNLMGIISHEMFDGIVYLHVVC
AGESSSKWVTLEEAMAYCPSGVVAYTKLQLAEIYGIPMDVLFD*

BS07410.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9106-PB 143 CG9106-PB 1..143 1..143 747 100 Plus
CG9106-PA 143 CG9106-PA 1..143 1..143 747 100 Plus
Cpr11A-PA 270 CG2560-PA 192..265 8..81 144 45.3 Plus