Clone Sequence Records
BS07410.3prime Sequence
462 bp (461 high quality bases) assembled on 2006-01-06
> BS07410.3prime
ATGGTCTAGAAAGCTTTCAGTCGAACAGAACGTCCATCGGTATGCCATAA
ATCTCGGCCAGCTGCAGTTTGGTGTAGGCAACAACGCCGCTGGGACAGTA
GGCCATCGCCTCCTCCAGAGTGACCCACTTGGAGCTTGACTCACCGGCAC
ATACCACATGCAGATAGACGATACCATCGAACATCTCATGGCTGATGATG
CCCATCAGGTTGCTGGGGGTGCCGCTACTGACGTTTCCGGCGGTGTTGCC
ACTACCGTTACCATCACCGTTACCGTTACCGTTTCCGCTTCCGCTTCCGT
TTCCGCCAATGATGTTGCCGCTCTGGCTCCCAGCGCTGCTCATTCCATCG
CCGTTGCCACCGTCGCTGCCGCCACCGCTGCCGCCACCCACGCTGCTACC
GCTGGCATTGGCGTTCGAAGAGGTGGACGGATTCAGATTGATGACCATGT
CGACTGATAACT
BS07410.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9106-PA | 432 | CG9106-RA | 1..432 | 448..17 | 2160 | 100 | Minus |
CG9106-PB | 432 | CG9106-RB | 1..432 | 448..17 | 2160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:53:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9106-RB | 1298 | CG9106-RB | 504..935 | 448..17 | 2160 | 100 | Minus |
CG9106-RA | 1240 | CG9106-RA | 446..877 | 448..17 | 2160 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:53:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15271399..15271830 | 17..448 | 2160 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 03:53:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 620..717 | 285..385 | 165 | 64.4 | Plus |
TART-A | 13424 | TART-A 13424bp | 11098..11129 | 404..373 | 115 | 84.4 | Minus |
BS07410.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:00 Download gff for
BS07410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9106-PB | 1..432 | 17..448 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:52 Download gff for
BS07410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9106-PB | 1..432 | 17..448 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:55:35 Download gff for
BS07410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9106-RA | 442..877 | 17..456 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:47:10 Download gff for
BS07410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9106-RA | 442..877 | 17..456 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:47:10 Download gff for
BS07410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15271399..15271834 | 17..456 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:55:35 Download gff for
BS07410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15165432..15165867 | 17..456 | 99 | | Plus |
BS07410.5prime Sequence
462 bp (461 high quality bases) assembled on 2006-01-06
> BS07410.5prime
GAAGTTATCAGTCGACATGGTCATCAATCTGAATCCGTCCACCTCTTCGA
ACGCCAATGCCAGCGGTAGCAGCGTGGGTGGCGGCAGCGGTGGCGGCAGC
GACGGTGGCAACGGCGATGGAATGAGCAGCGCTGGGAGCCAGAGCGGCAA
CATCATTGGCGGAAACGGAAGCGGAAGCGGAAACGGTAACGGTAACGGTG
ATGGTAACGGTAGTGGCAACACCGCCGGAAACGTCAGTAGCGGCACCCCC
AGCAACCTGATGGGCATCATCAGCCATGAGATGTTCGATGGTATCGTCTA
TCTGCATGTGGTATGTGCCGGTGAGTCAAGCTCCAAGTGGGTCACTCTGG
AGGAGGCGATGGCCTACTGTCCCAGCGGCGTTGTTGCCTACACCAAACTG
CAGCTGGCCGAGATTTATGGCATACCGATGGACGTTCTGTTCGACTGAAA
GCTTTCTAGACC
BS07410.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9106-PA | 432 | CG9106-RA | 1..432 | 17..448 | 2160 | 100 | Plus |
CG9106-PB | 432 | CG9106-RB | 1..432 | 17..448 | 2160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9106-RB | 1298 | CG9106-RB | 504..935 | 17..448 | 2160 | 100 | Plus |
CG9106-RA | 1240 | CG9106-RA | 446..877 | 17..448 | 2160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15271399..15271830 | 448..17 | 2160 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 07:05:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 620..717 | 180..80 | 165 | 64.4 | Minus |
TART-A | 13424 | TART-A 13424bp | 11098..11129 | 61..92 | 115 | 84.4 | Plus |
BS07410.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:01 Download gff for
BS07410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9106-PB | 1..432 | 17..448 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:53 Download gff for
BS07410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9106-PB | 1..432 | 17..448 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:22:14 Download gff for
BS07410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9106-RA | 442..877 | 9..448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:12:34 Download gff for
BS07410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9106-RA | 442..877 | 9..448 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:12:34 Download gff for
BS07410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15271399..15271834 | 9..448 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:22:14 Download gff for
BS07410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15165432..15165867 | 9..448 | 99 | | Minus |
BS07410.complete Sequence
464 bp (464 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635849
> BS07410.complete
GAAGTTATCAGTCGACATGGTCATCAATCTGAATCCGTCCACCTCTTCGA
ACGCCAATGCCAGCGGTAGCAGCGTGGGTGGCGGCAGCGGTGGCGGCAGC
GACGGTGGCAACGGCGATGGAATGAGCAGCGCTGGGAGCCAGAGCGGCAA
CATCATTGGCGGAAACGGAAGCGGAAGCGGAAACGGTAACGGTAACGGTG
ATGGTAACGGTAGTGGCAACACCGCCGGAAACGTCAGTAGCGGCACCCCC
AGCAACCTGATGGGCATCATCAGCCATGAGATGTTCGATGGTATCGTCTA
TCTGCATGTGGTATGTGCCGGTGAGTCAAGCTCCAAGTGGGTCACTCTGG
AGGAGGCGATGGCCTACTGTCCCAGCGGCGTTGTTGCCTACACCAAACTG
CAGCTGGCCGAGATTTATGGCATACCGATGGACGTTCTGTTCGACTGAAA
GCTTTCTAGACCAT
BS07410.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:53:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9106-RB | 432 | CG9106-PB | 1..432 | 17..448 | 2160 | 100 | Plus |
CG9106-RA | 432 | CG9106-PA | 1..432 | 17..448 | 2160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:53:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9106-RB | 1298 | CG9106-RB | 504..935 | 17..448 | 2160 | 100 | Plus |
CG9106-RA | 1240 | CG9106-RA | 446..877 | 17..448 | 2160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:53:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15271399..15271830 | 448..17 | 2160 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:53:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 620..717 | 180..80 | 165 | 64.4 | Minus |
TART-A | 13424 | TART-A 13424bp | 11098..11129 | 61..92 | 115 | 84.4 | Plus |
BS07410.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:02 Download gff for
BS07410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9106-RB | 1..432 | 17..448 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:32:20 Download gff for
BS07410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9106-RA | 442..877 | 9..448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:47:03 Download gff for
BS07410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9106-RA | 446..876 | 17..447 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:02 Download gff for
BS07410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9106-RA | 442..877 | 9..448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:59 Download gff for
BS07410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9106-RA | 446..876 | 17..447 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:59 Download gff for
BS07410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15271400..15271830 | 17..447 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:47:03 Download gff for
BS07410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15165433..15165863 | 17..447 | 100 | | Minus |
BS07410.pep Sequence
Translation from 16 to 447
> BS07410.pep
MVINLNPSTSSNANASGSSVGGGSGGGSDGGNGDGMSSAGSQSGNIIGGN
GSGSGNGNGNGDGNGSGNTAGNVSSGTPSNLMGIISHEMFDGIVYLHVVC
AGESSSKWVTLEEAMAYCPSGVVAYTKLQLAEIYGIPMDVLFD*
BS07410.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:09:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9106-PB | 143 | CG9106-PB | 1..143 | 1..143 | 747 | 100 | Plus |
CG9106-PA | 143 | CG9106-PA | 1..143 | 1..143 | 747 | 100 | Plus |
Cpr11A-PA | 270 | CG2560-PA | 192..265 | 8..81 | 144 | 45.3 | Plus |