Clone BS07412 Report

Search the DGRC for BS07412

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptDlic-RA
Protein status:BS07412.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07412.3prime Sequence

884 bp (804 high quality bases) assembled on 2006-01-06

> BS07412.3prime
ATGGTCTAGAAAGCTTTCAACACTCACTCTGCGACATGTCAATCTCTTTT
TTCACACTGCGCGATAATCGATCAAGCTCGGCGGCCGCATCTGTGCGCAC
GGCCAGCTTTTCGGGCGTCATTACTGCATCCGTACCGTTGGCAGTGCGAC
CCGGACCCGCCGGATTACCCGCTCCGCCGGGACCTCCGGTACCCGGACTG
CCCGACTTTTTGTGCAGCAGCGAGTTAAAGAAGTTGGCTAGAACGCCTTC
GGCGCCGGGCGTTGCTGGCGTCAGCTTGGGATCAATCTTTTTGGGCGAAC
TCTGTCCGGTGGTGCCGGGCGTTCGGGGTCCGCTCTTATTGCTGCCTACG
CCCTGCGATCGCAGTGGTGACTCACCGCGCACCTGGTCGCCCTGCTTTAG
GATCTCCTGCTGGCGTGCCAGGAATGCCTGCTCATCCTCCGTCTGCACTT
CCGCCTCGCGATTGGAAACCGCCTTTCTAGTTGGTGGCGATTTGATAATG
TCTGTGTAGGGATTCTCGGCCTTGACTCCATGCATATTCTCGTATAAAAT
ACTAATCTTCTTCAGGCTATCCCAGCCAGCCGGAATGAGTACCGCATCCT
TCTCAACGACTAGCGCTGGCGTACGGAATGGTAGACCATAAATTCGATGC
GTCAGATACTTGTAGAGGACATCACAGTTCTTGTCTTCCTTGACGCTCGT
GTAGAAGAGCGAAGTGCCATGCCGCAGGCAGAAGTTACGTATCCACTGCT
GGATGAAGTCAAAGTGCTCGTCACGATACTCGTACTCCTTCTCTAGCGTG
GTCATGTAGTCCGTCTTTGTGACCACAACAACGATGTCGAGGCCCAGATT
TGTATTAGTGCATCCTCCGTCAGCGGCAGCAGGT

BS07412.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG1938-PD 1482 Dlic2-RD 645..1482 854..17 4190 100 Minus
CG1938-PB 1197 Dlic2-RB 360..1197 854..17 4190 100 Minus
CG1938-PA 1482 Dlic2-RA 645..1482 854..17 4190 100 Minus
CG1938-PC 1482 Dlic2-RC 645..1482 854..17 4190 100 Minus
CG1938-PD 1482 Dlic2-RD 614..644 884..854 155 100 Minus
CG1938-PB 1197 Dlic2-RB 329..359 884..854 155 100 Minus
CG1938-PA 1482 Dlic2-RA 614..644 884..854 155 100 Minus
CG1938-PC 1482 Dlic2-RC 614..644 884..854 155 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dlic-RA 2241 CG1938-RA 962..1830 884..17 4320 99.9 Minus
Dlic-RB 3371 CG1938-RB 618..1486 884..17 4320 99.9 Minus
Dlic-RD 3715 CG1938-RD 962..1830 884..17 4320 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:07:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11162514..11162785 288..17 1360 100 Minus
X 23542271 X 11161781..11162012 816..585 1160 100 Minus
X 23542271 X 11162267..11162454 474..287 940 100 Minus
X 23542271 X 11162086..11162198 584..472 565 100 Minus
X 23542271 X 11161648..11161718 884..815 305 98.6 Minus
Blast to na_te.dros performed on 2015-02-03 12:07:34 has no hits.

BS07412.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:05 Download gff for BS07412.3prime
Subject Subject Range Query Range Percent Splice Strand
Dlic2-PA 614..1482 17..884 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:57 Download gff for BS07412.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1938-PA 614..1482 17..884 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:46:38 Download gff for BS07412.3prime
Subject Subject Range Query Range Percent Splice Strand
Dlic-RD 962..1832 13..884 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:38:35 Download gff for BS07412.3prime
Subject Subject Range Query Range Percent Splice Strand
Dlic-RD 962..1832 13..884 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:38:35 Download gff for BS07412.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11161648..11161718 815..884 98 -> Minus
X 11161783..11162012 585..814 100 -> Minus
X 11162086..11162197 473..584 100 -> Minus
X 11162269..11162454 287..472 100 -> Minus
X 11162516..11162787 13..286 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:46:38 Download gff for BS07412.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11055681..11055751 815..884 98 -> Minus
arm_X 11055816..11056045 585..814 100 -> Minus
arm_X 11056119..11056230 473..584 100 -> Minus
arm_X 11056302..11056487 287..472 100 -> Minus
arm_X 11056549..11056820 13..286 99   Minus

BS07412.5prime Sequence

911 bp (827 high quality bases) assembled on 2006-01-06

> BS07412.5prime
GAAGTTATCAGTCGACATGGCGATGAACAGTGGGACGCAAACGAATGCGC
TGACATCATCCTTTACCATGAAGAAAAAGGATGCGGCCGCGGAAAAGGAG
AACCTATGGTCGGCGATATTGAATGAAGTACAAACACAGGGCAGCACAAA
ACTTCCATCAAACAAATCTGTACTAGTATTAGGCGACAATGCCACCGGAA
AGACGACACTCATTGCCAAACTGCAGGGCGTCGAGGATCCGAAGAAGGGT
TCCGGCCTGGAGTATGCCTACATTGATGTCAAGGATGAGTACAGAGACGA
CATGACGCGTTTAGGCGTTTGGGTCCTGGACGGTGATCCAGGACACACAA
ACCTGCTACACTATGCGCTCAACGAAACGAACTATGCACACACACTCGTC
ATCCTCACCGTTTCGATGACGCAGCCGTGGGGCTGGCTGGAGCAGCTAAA
CCATTGGATCAAGGTCCTCGGCCAGCACATCGATAGCCTGCAGCTGGACG
CCAAAGAGAAGGAGGCGGCCCGCCAGCGACTGACCACCACGTGGCAGAGC
TACTGTGAGGTGGGCGACGATCTGGATCCAGGCTCCCCCGTCAAGCGGAC
GATGCGCAACAACTCGATCGACGAGGATGACCTGCTGCCGCTGACGGAGG
ATGCACTAATTACAAATCTGGGCCTCGACATCGTTGTTGTGGTCACAAAG
ACGGACTACATGACCACGCTAGAGAAGGAGTACGAGTATCGTGACGAGCA
CTTTGACTTCATCCAGCAGTGGATACGTAACTTCTGCCTGCGGCATGGCA
CTTCGCTCTTCTACACGAGCGTCAAGGAAGACAAGAACTGTGATGTCCTC
TACAAGTATCTGACGCATCGAATTTATGGTCTACCATTCCGTACGCCAGC
GCTAGTCGTTG

BS07412.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG1938-PD 1482 Dlic2-RD 1..895 17..911 4475 100 Plus
CG1938-PA 1482 Dlic2-RA 1..895 17..911 4475 100 Plus
CG1938-PC 1482 Dlic2-RC 1..895 17..911 4475 100 Plus
CG1938-PB 1197 Dlic2-RB 1..610 302..911 3050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:25:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dlic-RA 2241 CG1938-RA 347..1243 15..911 4485 100 Plus
Dlic-RD 3715 CG1938-RD 347..1243 15..911 4485 100 Plus
Dlic-RB 3371 CG1938-RB 97..899 109..911 4015 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11161317..11161718 299..700 2010 100 Plus
X 23542271 X 11161781..11161993 699..911 1065 100 Plus
X 23542271 X 11161060..11161251 108..299 960 100 Plus
X 23542271 X 11155135..11155230 15..110 480 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:24:57 has no hits.

BS07412.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:05 Download gff for BS07412.5prime
Subject Subject Range Query Range Percent Splice Strand
Dlic2-PC 1..895 17..911 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:01:59 Download gff for BS07412.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1938-PC 1..895 17..911 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:00:03 Download gff for BS07412.5prime
Subject Subject Range Query Range Percent Splice Strand
Dlic-RD 342..1243 9..911 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:07:25 Download gff for BS07412.5prime
Subject Subject Range Query Range Percent Splice Strand
Dlic-RD 342..1243 9..911 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:07:25 Download gff for BS07412.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11155130..11155228 9..108 97 -> Plus
X 11161061..11161251 109..299 100 -> Plus
X 11161318..11161718 300..700 100 -> Plus
X 11161783..11161993 701..911 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:00:03 Download gff for BS07412.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11055816..11056026 701..911 100   Plus
arm_X 11049163..11049261 9..108 97 -> Plus
arm_X 11055094..11055284 109..299 100 -> Plus
arm_X 11055351..11055751 300..700 100 -> Plus

BS07412.complete Sequence

1514 bp (1514 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635850

> BS07412.complete
GAAGTTATCAGTCGACATGGCGATGAACAGTGGGACGCAAACGAATGCGC
TGACATCATCCTTTACCATGAAGAAAAAGGATGCGGCCGCGGAAAAGGAG
AACCTATGGTCGGCGATATTGAATGAAGTACAAACACAGGGCAGCACAAA
ACTTCCATCAAACAAATCTGTACTAGTATTAGGCGACAATGCCACCGGAA
AGACGACACTCATTGCCAAACTGCAGGGCGTCGAGGATCCGAAGAAGGGT
TCCGGCCTGGAGTATGCCTACATTGATGTCAAGGATGAGTACAGAGACGA
CATGACGCGTTTAGGCGTTTGGGTCCTGGACGGTGATCCAGGACACACAA
ACCTGCTACACTATGCGCTCAACGAAACGAACTATGCACACACACTCGTC
ATCCTCACCGTTTCGATGACGCAGCCGTGGGGCTGGCTGGAGCAGCTAAA
CCATTGGATCAAGGTCCTCGGCCAGCACATCGATAGCCTGCAGCTGGACG
CCAAAGAGAAGGAGGCGGCCCGCCAGCGACTGACCACCACGTGGCAGAGC
TACTGTGAGGTGGGCGACGATCTGGATCCAGGCTCCCCCGTCAAGCGGAC
GATGCGCAACAACTCGATCGACGAGGATGACCTGCTGCCGCTGACGGAGG
ATGCACTAATTACAAATCTGGGCCTCGACATCGTTGTTGTGGTCACAAAG
ACGGACTACATGACCACGCTAGAGAAGGAGTACGAGTATCGTGACGAGCA
CTTTGACTTCATCCAGCAGTGGATACGTAACTTCTGCCTGCGGCATGGCA
CTTCGCTCTTCTACACGAGCGTCAAGGAAGACAAGAACTGTGATGTCCTC
TACAAGTATCTGACGCATCGAATTTATGGTCTACCATTCCGTACGCCAGC
GCTAGTCGTTGAGAAGGATGCGGTACTCATTCCGGCTGGCTGGGATAGCC
TGAAGAAGATTAGTATTTTATACGAGAATATGCATGGAGTCAAGGCCGAG
AATCCCTACACAGACATTATCAAATCGCCACCAACTAGAAAGGCGGTTTC
CAATCGCGAGGCGGAAGTGCAGACGGAGGATGAGCAGGCATTCCTGGCAC
GCCAGCAGGAGATCCTAAAGCAGGGCGACCAGGTGCGCGGTGAGTCACCA
CTGCGATCGCAGGGCGTAGGCAGCAATAAGAGCGGACCCCGAACGCCCGG
CACCACCGGACAGAGTTCGCCCAAAAAGATTGATCCCAAGCTGACGCCAG
CAACGCCCGGCGCCGAAGGCGTTCTAGCCAACTTCTTTAACTCGCTGCTG
CACAAAAAGTCGGGCAGTCCGGGTACCGGAGGTCCCGGCGGAGCGGGTAA
TCCGGCGGGTCCGGGTCGCACTGCCAACGGTACGGATGCAGTAATGACGC
CCGAAAAGCTGGCCGTGCGCACAGATGCGGCCGCCGAGCTTGATCGATTA
TCGCGCAGTGTGAAAAAAGAGATTGACATGTCGCAGAGTGAGTGTTGAAA
GCTTTCTAGACCAT

BS07412.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dlic-RA 1482 CG1938-PA 1..1482 17..1498 7410 100 Plus
Dlic-RD 1482 CG1938-PD 1..1482 17..1498 7410 100 Plus
Dlic-RB 1197 CG1938-PB 1..1197 302..1498 5985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dlic-RA 2241 CG1938-RA 347..1830 15..1498 7420 100 Plus
Dlic-RD 3715 CG1938-RD 347..1830 15..1498 7420 100 Plus
Dlic-RB 3371 CG1938-RB 97..1486 109..1498 6950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:28:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11161317..11161718 299..700 2010 100 Plus
X 23542271 X 11162514..11162785 1227..1498 1360 100 Plus
X 23542271 X 11161781..11162012 699..930 1160 100 Plus
X 23542271 X 11161060..11161251 108..299 960 100 Plus
X 23542271 X 11162267..11162454 1041..1228 940 100 Plus
X 23542271 X 11162086..11162198 931..1043 565 100 Plus
X 23542271 X 11155135..11155230 15..110 480 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:28:47 has no hits.

BS07412.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:00 Download gff for BS07412.complete
Subject Subject Range Query Range Percent Splice Strand
Dlic2-RC 1..1482 17..1498 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:05 Download gff for BS07412.complete
Subject Subject Range Query Range Percent Splice Strand
Dlic2-RC 387..1877 9..1502 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:44 Download gff for BS07412.complete
Subject Subject Range Query Range Percent Splice Strand
Dlic-RD 349..1829 17..1497 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:00 Download gff for BS07412.complete
Subject Subject Range Query Range Percent Splice Strand
Dlic2-RC 387..1877 9..1502 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:19:51 Download gff for BS07412.complete
Subject Subject Range Query Range Percent Splice Strand
Dlic-RD 349..1829 17..1497 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:19:51 Download gff for BS07412.complete
Subject Subject Range Query Range Percent Splice Strand
X 11162516..11162784 1229..1497 100   Plus
X 11162269..11162454 1043..1228 100 -> Plus
X 11162086..11162197 931..1042 100 -> Plus
X 11155137..11155228 17..108 100 -> Plus
X 11161061..11161251 109..299 100 -> Plus
X 11161318..11161718 300..700 100 -> Plus
X 11161783..11162012 701..930 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:44 Download gff for BS07412.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11056119..11056230 931..1042 100 -> Plus
arm_X 11056302..11056487 1043..1228 100 -> Plus
arm_X 11056549..11056817 1229..1497 100   Plus
arm_X 11049170..11049261 17..108 100 -> Plus
arm_X 11055094..11055284 109..299 100 -> Plus
arm_X 11055351..11055751 300..700 100 -> Plus
arm_X 11055816..11056045 701..930 100 -> Plus

BS07412.pep Sequence

Translation from 16 to 1497

> BS07412.pep
MAMNSGTQTNALTSSFTMKKKDAAAEKENLWSAILNEVQTQGSTKLPSNK
SVLVLGDNATGKTTLIAKLQGVEDPKKGSGLEYAYIDVKDEYRDDMTRLG
VWVLDGDPGHTNLLHYALNETNYAHTLVILTVSMTQPWGWLEQLNHWIKV
LGQHIDSLQLDAKEKEAARQRLTTTWQSYCEVGDDLDPGSPVKRTMRNNS
IDEDDLLPLTEDALITNLGLDIVVVVTKTDYMTTLEKEYEYRDEHFDFIQ
QWIRNFCLRHGTSLFYTSVKEDKNCDVLYKYLTHRIYGLPFRTPALVVEK
DAVLIPAGWDSLKKISILYENMHGVKAENPYTDIIKSPPTRKAVSNREAE
VQTEDEQAFLARQQEILKQGDQVRGESPLRSQGVGSNKSGPRTPGTTGQS
SPKKIDPKLTPATPGAEGVLANFFNSLLHKKSGSPGTGGPGGAGNPAGPG
RTANGTDAVMTPEKLAVRTDAAAELDRLSRSVKKEIDMSQSEC*

BS07412.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dlic-PA 493 CG1938-PA 1..493 1..493 2578 100 Plus
Dlic-PD 493 CG1938-PD 1..493 1..493 2578 100 Plus
Dlic-PB 398 CG1938-PB 1..398 96..493 2100 100 Plus