Clone BS07416 Report

Search the DGRC for BS07416

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptIpk1-RA
Protein status:BS07416.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07416.3prime Sequence

875 bp (809 high quality bases) assembled on 2006-01-06

> BS07416.3prime
ATGGTCTAGAAAGCTTCTATCTGCAATTGCCAAGGTTCTCTGGGGGGCAG
GCAGAATAAACAAACCCAAACGGACAGAGACTGAGTAGTTTGGGCAGCAG
TTTGATTGGTTGGCTTACCTTTACCAGCAATTGCAAATTCAAAATTTTTT
GCAGCACACAATTTTTTGGTAAGCGAAATATTTCCGTTTTGTTGTTTTGC
GCTTGAGTTTGATTCGCAGGCTCATTTCGATTCAGTTTTTGGCTTTCATT
CTGATTCACGTTGCGACTTGTCGTACTAGCAGCCTCAGCCGGAGTTTCCG
GTTCCGTTTTTGTTTCCGTTCGACCTGAAGTTGCCATTGCCGTAGCCGTT
GCCGTTGCCGTTGCCGTTGCCAACACATTGCCGGACAGTTGGCTGCTCGA
TGCTGGTCCTGCTGCCATCGAGGTGGCTGCCTGTCTAGTTATTGTTGTTT
CCACTCTGGCCACTTTTGTGTACCTTTGGGTCGTGGCTGTTGCAGCAGCT
GCTCTTGTCCGCGTCGAGGATTGACCGGCAGTGACAACAGGGGCGGCTGC
CCTGCCTCCGAGTGGCAGGACAACATTAGCGGCGCCAATTCCAGCAGCTC
CGGCCTTTGTCTCCGTCGCCGCAATAGAAACGCGACTCTGATTCAGCTGC
TCCGGCTCCGGCTGCTCCTGCTGCTGCTTCTGGCTCTGATTGGAGCCCTC
TGCTCGTTTGGATTCCGGGTGCTCGTATTCCCTTAGCAGACAGGCCACCA
GCAAATGTTTTATAAGCACCATAATTTCACCGGGAAAGACACGCGAGCTC
AATTCATCGAAGGAAATCGAATTCGCGTGATCGCCATAAATTAAATTGCT
GTTCTGAAACACACGTAAATTATTT

BS07416.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG30295-PA 1866 Ipk1-RA 1008..1866 875..17 4295 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:12:53
Subject Length Description Subject Range Query Range Score Percent Strand
Ipk1-RA 2472 CG30295-RA 1475..2333 875..17 4295 100 Minus
Ipk1-RC 2633 CG30295-RC 1475..2231 875..119 3785 100 Minus
Ipk1-RD 1825 CG30295-RD 664..1420 875..119 3785 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:12:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20877617..20878323 723..17 3535 100 Minus
2R 25286936 2R 20876526..20876621 875..780 480 100 Minus
2R 25286936 2R 20877254..20877312 780..722 295 100 Minus
Blast to na_te.dros performed on 2015-01-31 16:12:49 has no hits.

BS07416.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:11 Download gff for BS07416.3prime
Subject Subject Range Query Range Percent Splice Strand
Ipk1-PA 1008..1866 17..875 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:05 Download gff for BS07416.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30295-PA 1008..1866 17..875 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:21:42 Download gff for BS07416.3prime
Subject Subject Range Query Range Percent Splice Strand
Ipk1-RA 1475..2333 17..875 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:40:42 Download gff for BS07416.3prime
Subject Subject Range Query Range Percent Splice Strand
Ipk1-RA 1475..2333 17..875 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:40:42 Download gff for BS07416.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20876526..20876621 780..875 100 -> Minus
2R 20877255..20877312 722..779 100 -> Minus
2R 20877619..20878323 17..721 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:21:42 Download gff for BS07416.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16764031..16764126 780..875 100 -> Minus
arm_2R 16764760..16764817 722..779 100 -> Minus
arm_2R 16765124..16765828 17..721 100   Minus

BS07416.5prime Sequence

846 bp (815 high quality bases) assembled on 2006-01-06

> BS07416.5prime
GAAGTTATCAGTCGACATGACAGCCGAACGAGGACCCCGCTCCCCGGGAA
CGGGGCAAAAACTAAGGCTTAGAGCCACTGAGCCAATGCCACAGTGGACG
GCCAAAAATCTGCACGCCCTGCTGGATCTGCCCGCGGCGATGGAACTGCG
CCAAATTGAGTTGATCTATCGGGCGGAGGGTAATGCAAATTTGGTGCTCG
CCCTGCCGCAATTTAAAAAAGTTTTACGTTTGCCAAAAATGATATCCAGC
AGACTGCGCCAGGCGGCGCACCAGCGGCACGAGCTGGCGGATGAGGTTGC
TCGGCCGGAAGGGCAGCGTGTCTCATCCGAAAGAGCTGGAACTGAAAATG
CTGGCGACTTGACAATGCCGGATTTTATGGCTTATATCGGGATAATGCGC
CGTCTATTAGGAAATGAGTTTGTCTGCGGAGCGGATATTGTTGCCATACC
AAAGGAAGACGATAGATTCTGGATAAACGAGCATATACGCGCCCAAAGAC
CGGTTTCGCGTCTGGATAAGGAATTTGTGGGGCCATTCGGCCTGCTGCTG
CCAGATGTGACCCAATTGCCTGCCACGTTCGATGTTTTACTTGCCAATTT
ACAGGCAAAGGGCACAACAGGAGATGAAAGTGGAGCTGCAGCGGGCGTAG
GAGATGGCGGTGGCGTTGGCCGTGGAGCAGGAACAAGGACGAAAAACAGG
AGCGCTGTCCGTCGTCTGGGCGATACATATGCCATCGAAATAAAACCCAA
ACAAGGCTGGCTTCAGTTGGCAAGTGATGTCAACGATTTATTTGATTTAA
TGCCATCGGGGGCAGTGACAAAGCCAAAGGAGACGACCCTGCATCA

BS07416.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG30295-PA 1866 Ipk1-RA 1..822 17..838 4110 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
Ipk1-RC 2633 CG30295-RC 467..1289 16..838 4115 100 Plus
Ipk1-RB 2636 CG30295-RB 467..1289 16..838 4115 100 Plus
Ipk1-RA 2472 CG30295-RA 467..1289 16..838 4115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:25:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20871671..20872005 16..350 1675 100 Plus
2R 25286936 2R 20875231..20875471 598..838 1190 99.6 Plus
2R 25286936 2R 20872539..20872692 350..503 770 100 Plus
2R 25286936 2R 20873650..20873752 503..605 515 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:25:35 has no hits.

BS07416.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:12 Download gff for BS07416.5prime
Subject Subject Range Query Range Percent Splice Strand
Ipk1-PA 1..829 17..845 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:07 Download gff for BS07416.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30295-PA 1..829 17..845 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:24:16 Download gff for BS07416.5prime
Subject Subject Range Query Range Percent Splice Strand
Ipk1-RA 462..1296 9..845 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:56:47 Download gff for BS07416.5prime
Subject Subject Range Query Range Percent Splice Strand
Ipk1-RA 462..1296 9..845 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:56:47 Download gff for BS07416.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20871666..20872005 9..350 99 -> Plus
2R 20872540..20872692 351..503 100 -> Plus
2R 20873651..20873751 504..604 100 -> Plus
2R 20875238..20875478 605..845 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:24:16 Download gff for BS07416.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16762743..16762983 605..845 99   Plus
arm_2R 16759171..16759510 9..350 99 -> Plus
arm_2R 16760045..16760197 351..503 100 -> Plus
arm_2R 16761156..16761256 504..604 100 -> Plus

BS07416.complete Sequence

1898 bp assembled on 2008-01-02

GenBank Submission: FJ635851

> BS07416.complete
GAAGTTATCAGTCGACATGACAGCCGAACGAGGACCCCGCTCCCCGGGAA
CGGGGCAAAAACTAAGGCTTAGAGCCACTGAGCCAATGCCACAGTGGACG
GCCAAAAATCTGCACGCCCTGCTGGATCTGCCCGCGGCGATGGAACTGCG
CCAAATTGAGTTGATCTATCGGGCGGAGGGTAATGCAAATTTGGTGCTCG
CCCTGCCGCAATTTAAAAAAGTTTTACGTTTGCCAAAAATGATATCCAGC
AGACTGCGCCAGGCGGCGCACCAGCGGCACGAGCTGGCGGATGAGGTTGC
TCGGCCGGAAGGGCAGCGTGTCTCATCCGAAAGAGCTGGAACTGAAAATG
CTGGCGACTTGACAATGCCGGATTTTATGGCTTATATCGGGATAATGCGC
CGTCTATTAGGAAATGAGTTTGTCTGCGGAGCGGATATTGTTGCCATACC
AAAGGAAGACGATAGATTCTGGATAAACGAGCATATACGCGCCCAAAGAC
CGGTTTCGCGTCTGGATAAGGAATTTGTGGGGCCATTCGGCCTGCTGCTG
CCAGATGTGACCCAATTGCCTGCCACGTTCGATGTTTTACTTGCCAATTT
ACAGGCAAAGGGCACAACAGGAGATGAAAGTGGAGCTGCAGCGGGCGTAG
GAGATGGCGGTGGCGTTGGCCGTGGAGCAGGAACAAGGACGAAAAACAGG
AGCGCTGTCCGTCGTCTGGGCGATACATATGCCATCGAAATAAAACCCAA
ACAAGGCTGGCTTCAGTTGGCAAGTGATGTCAACGATTTATTTGATTTAA
TGCCATCGGGGGCAGTGACAAAGCCAAAGGAGACGACCTGCAATCAGGAG
GAGAATGAGCCCTCTGCCCGGGACAAGTGCTGGTGTCGCTTTTGCAGCAT
GCAACTGCTGAAGATGCACAATGGGAAAATCAAACGTTTGGGCCACTACT
GTCCGCTGGATCTATTTTCCGGTACACCCAGTCGTATGCTCGATGCCTTG
GATGCACTTCTCGCCTGCCCGCAAAATAATTTACGTGTGTTTCAGAACAG
CAATTTAATTTATGGCGATCACGCGAATTCGATTTCCTTCGATGAATTGA
GCTCGCGTGTCTTTCCCGGTGAAATTATGGTGCTTATAAAACATTTGCTG
GTGGCCTGTCTGCTAAGGGAATACGAGCACCCGGAATCCAAACGAGCAGA
GGGCTCCAATCAGAGCCAGAAGCAGCAGCAGGAGCAGCCGGAGCCGGAGC
AGCTGAATCAGAGTCGCGTTTCTATTGCGGCGACGGAGACAAAGGCCGGA
GCTGCTGGAATTGGCGCCGCTAATGTTGTCCTGCCACTCGGAGGCAGGGC
AGCCGCCCCTGTTGTCACTGCCGGTCAATCCTCGACGCGGACAAGAGCAG
CTGCTGCAACAGCCACGACCCAAAGGTACACAAAAGTGGCCAGAGTGGAA
ACAACAATAACTAGACAGGCAGCCACCTCGATGGCAGCAGGACCAGCATC
GAGCAGCCAACTGTCCGGCAATGTGTTGGCAACGGCAACGGCAACGGCAA
CGGCTACGGCAATGGCAACTTCAGGTCGAACGGAAACAAAAACGGAACCG
GAAACTCCGGCTGAGGCTGCTAGTACGACAAGTCGCAACGTGAATCAGAA
TGAAAGCCAAAAACTGAATCGAAATGAGCCTGCGAATCAAACTCAAGCGC
AAAACAACAAAACGGAAATATTTCGCTTACCAAAAAATTGTGTGCTGCAA
AAAATTTTGAATTTGCAATTGCTGGTAAAGGTAAGCCAACCAATCAAACT
GCTGCCCAAACTACTCAGTCTCTGTCCGTTTGGGTTTGTTTATTCTGCCT
GCCCCCCAGAGAACCTTGGCAATTGCAGATAGAAGCTTTCTAGACCAT

BS07416.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
Ipk1-RA 1866 CG30295-PA 1..1866 17..1882 9330 100 Plus
Ipk1-RC 2148 CG30295-PC 1..1764 17..1780 8820 100 Plus
Ipk1-RB 2151 CG30295-PB 1..1764 17..1780 8820 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
Ipk1-RA 2472 CG30295-RA 467..2333 16..1882 9335 100 Plus
Ipk1-RC 2633 CG30295-RC 467..2231 16..1780 8825 100 Plus
Ipk1-RB 2636 CG30295-RB 467..2231 16..1780 8825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20877617..20878323 1176..1882 3535 100 Plus
2R 25286936 2R 20871671..20872005 16..350 1675 100 Plus
2R 25286936 2R 20875231..20875546 598..913 1565 99.7 Plus
2R 25286936 2R 20872539..20872692 350..503 770 100 Plus
2R 25286936 2R 20876474..20876621 972..1119 740 100 Plus
2R 25286936 2R 20873650..20873752 503..605 515 100 Plus
2R 25286936 2R 20875603..20875663 912..972 305 100 Plus
2R 25286936 2R 20877254..20877312 1119..1177 295 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:39:16 has no hits.

BS07416.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:25 Download gff for BS07416.complete
Subject Subject Range Query Range Percent Splice Strand
Ipk1-RA 1..1866 17..1882 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:34 Download gff for BS07416.complete
Subject Subject Range Query Range Percent Splice Strand
Ipk1-RA 453..2318 17..1882 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:34 Download gff for BS07416.complete
Subject Subject Range Query Range Percent Splice Strand
Ipk1-RA 468..2333 17..1882 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:25 Download gff for BS07416.complete
Subject Subject Range Query Range Percent Splice Strand
Ipk1-RA 447..2318 9..1882 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:44 Download gff for BS07416.complete
Subject Subject Range Query Range Percent Splice Strand
Ipk1-RA 468..2333 17..1882 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:44 Download gff for BS07416.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20871672..20872005 17..350 100 -> Plus
2R 20872540..20872692 351..503 100 -> Plus
2R 20873651..20873751 504..604 100 -> Plus
2R 20875238..20875546 605..913 100 -> Plus
2R 20875605..20875663 914..972 100 -> Plus
2R 20876475..20876621 973..1119 100 -> Plus
2R 20877255..20877312 1120..1177 100 -> Plus
2R 20877619..20878323 1178..1882 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:34 Download gff for BS07416.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16759177..16759510 17..350 100 -> Plus
arm_2R 16760045..16760197 351..503 100 -> Plus
arm_2R 16761156..16761256 504..604 100 -> Plus
arm_2R 16762743..16763051 605..913 100 -> Plus
arm_2R 16763110..16763168 914..972 100 -> Plus
arm_2R 16763980..16764126 973..1119 100 -> Plus
arm_2R 16764760..16764817 1120..1177 100 -> Plus
arm_2R 16765124..16765828 1178..1882 100   Plus

BS07416.pep Sequence

Translation from 16 to 1881

> BS07416.pep
MTAERGPRSPGTGQKLRLRATEPMPQWTAKNLHALLDLPAAMELRQIELI
YRAEGNANLVLALPQFKKVLRLPKMISSRLRQAAHQRHELADEVARPEGQ
RVSSERAGTENAGDLTMPDFMAYIGIMRRLLGNEFVCGADIVAIPKEDDR
FWINEHIRAQRPVSRLDKEFVGPFGLLLPDVTQLPATFDVLLANLQAKGT
TGDESGAAAGVGDGGGVGRGAGTRTKNRSAVRRLGDTYAIEIKPKQGWLQ
LASDVNDLFDLMPSGAVTKPKETTCNQEENEPSARDKCWCRFCSMQLLKM
HNGKIKRLGHYCPLDLFSGTPSRMLDALDALLACPQNNLRVFQNSNLIYG
DHANSISFDELSSRVFPGEIMVLIKHLLVACLLREYEHPESKRAEGSNQS
QKQQQEQPEPEQLNQSRVSIAATETKAGAAGIGAANVVLPLGGRAAAPVV
TAGQSSTRTRAAAATATTQRYTKVARVETTITRQAATSMAAGPASSSQLS
GNVLATATATATATAMATSGRTETKTEPETPAEAASTTSRNVNQNESQKL
NRNEPANQTQAQNNKTEIFRLPKNCVLQKILNLQLLVKVSQPIKLLPKLL
SLCPFGFVYSACPPENLGNCR*

BS07416.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:18:40
Subject Length Description Subject Range Query Range Score Percent Strand
Ipk1-PA 621 CG30295-PA 1..621 1..621 3178 100 Plus
Ipk1-PC 715 CG30295-PC 1..588 1..588 2996 100 Plus
Ipk1-PB 716 CG30295-PB 1..588 1..588 2996 100 Plus
Ipk1-PD 576 CG30295-PD 57..448 197..588 1992 100 Plus