Clone Sequence Records
BS07416.3prime Sequence
875 bp (809 high quality bases) assembled on 2006-01-06
> BS07416.3prime
ATGGTCTAGAAAGCTTCTATCTGCAATTGCCAAGGTTCTCTGGGGGGCAG
GCAGAATAAACAAACCCAAACGGACAGAGACTGAGTAGTTTGGGCAGCAG
TTTGATTGGTTGGCTTACCTTTACCAGCAATTGCAAATTCAAAATTTTTT
GCAGCACACAATTTTTTGGTAAGCGAAATATTTCCGTTTTGTTGTTTTGC
GCTTGAGTTTGATTCGCAGGCTCATTTCGATTCAGTTTTTGGCTTTCATT
CTGATTCACGTTGCGACTTGTCGTACTAGCAGCCTCAGCCGGAGTTTCCG
GTTCCGTTTTTGTTTCCGTTCGACCTGAAGTTGCCATTGCCGTAGCCGTT
GCCGTTGCCGTTGCCGTTGCCAACACATTGCCGGACAGTTGGCTGCTCGA
TGCTGGTCCTGCTGCCATCGAGGTGGCTGCCTGTCTAGTTATTGTTGTTT
CCACTCTGGCCACTTTTGTGTACCTTTGGGTCGTGGCTGTTGCAGCAGCT
GCTCTTGTCCGCGTCGAGGATTGACCGGCAGTGACAACAGGGGCGGCTGC
CCTGCCTCCGAGTGGCAGGACAACATTAGCGGCGCCAATTCCAGCAGCTC
CGGCCTTTGTCTCCGTCGCCGCAATAGAAACGCGACTCTGATTCAGCTGC
TCCGGCTCCGGCTGCTCCTGCTGCTGCTTCTGGCTCTGATTGGAGCCCTC
TGCTCGTTTGGATTCCGGGTGCTCGTATTCCCTTAGCAGACAGGCCACCA
GCAAATGTTTTATAAGCACCATAATTTCACCGGGAAAGACACGCGAGCTC
AATTCATCGAAGGAAATCGAATTCGCGTGATCGCCATAAATTAAATTGCT
GTTCTGAAACACACGTAAATTATTT
BS07416.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30295-PA | 1866 | Ipk1-RA | 1008..1866 | 875..17 | 4295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:12:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ipk1-RA | 2472 | CG30295-RA | 1475..2333 | 875..17 | 4295 | 100 | Minus |
Ipk1-RC | 2633 | CG30295-RC | 1475..2231 | 875..119 | 3785 | 100 | Minus |
Ipk1-RD | 1825 | CG30295-RD | 664..1420 | 875..119 | 3785 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:12:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20877617..20878323 | 723..17 | 3535 | 100 | Minus |
2R | 25286936 | 2R | 20876526..20876621 | 875..780 | 480 | 100 | Minus |
2R | 25286936 | 2R | 20877254..20877312 | 780..722 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 16:12:49 has no hits.
BS07416.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:11 Download gff for
BS07416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ipk1-PA | 1008..1866 | 17..875 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:05 Download gff for
BS07416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30295-PA | 1008..1866 | 17..875 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:21:42 Download gff for
BS07416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ipk1-RA | 1475..2333 | 17..875 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:40:42 Download gff for
BS07416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ipk1-RA | 1475..2333 | 17..875 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:40:42 Download gff for
BS07416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20876526..20876621 | 780..875 | 100 | -> | Minus |
2R | 20877255..20877312 | 722..779 | 100 | -> | Minus |
2R | 20877619..20878323 | 17..721 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:21:42 Download gff for
BS07416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16764031..16764126 | 780..875 | 100 | -> | Minus |
arm_2R | 16764760..16764817 | 722..779 | 100 | -> | Minus |
arm_2R | 16765124..16765828 | 17..721 | 100 | | Minus |
BS07416.5prime Sequence
846 bp (815 high quality bases) assembled on 2006-01-06
> BS07416.5prime
GAAGTTATCAGTCGACATGACAGCCGAACGAGGACCCCGCTCCCCGGGAA
CGGGGCAAAAACTAAGGCTTAGAGCCACTGAGCCAATGCCACAGTGGACG
GCCAAAAATCTGCACGCCCTGCTGGATCTGCCCGCGGCGATGGAACTGCG
CCAAATTGAGTTGATCTATCGGGCGGAGGGTAATGCAAATTTGGTGCTCG
CCCTGCCGCAATTTAAAAAAGTTTTACGTTTGCCAAAAATGATATCCAGC
AGACTGCGCCAGGCGGCGCACCAGCGGCACGAGCTGGCGGATGAGGTTGC
TCGGCCGGAAGGGCAGCGTGTCTCATCCGAAAGAGCTGGAACTGAAAATG
CTGGCGACTTGACAATGCCGGATTTTATGGCTTATATCGGGATAATGCGC
CGTCTATTAGGAAATGAGTTTGTCTGCGGAGCGGATATTGTTGCCATACC
AAAGGAAGACGATAGATTCTGGATAAACGAGCATATACGCGCCCAAAGAC
CGGTTTCGCGTCTGGATAAGGAATTTGTGGGGCCATTCGGCCTGCTGCTG
CCAGATGTGACCCAATTGCCTGCCACGTTCGATGTTTTACTTGCCAATTT
ACAGGCAAAGGGCACAACAGGAGATGAAAGTGGAGCTGCAGCGGGCGTAG
GAGATGGCGGTGGCGTTGGCCGTGGAGCAGGAACAAGGACGAAAAACAGG
AGCGCTGTCCGTCGTCTGGGCGATACATATGCCATCGAAATAAAACCCAA
ACAAGGCTGGCTTCAGTTGGCAAGTGATGTCAACGATTTATTTGATTTAA
TGCCATCGGGGGCAGTGACAAAGCCAAAGGAGACGACCCTGCATCA
BS07416.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30295-PA | 1866 | Ipk1-RA | 1..822 | 17..838 | 4110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:25:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ipk1-RC | 2633 | CG30295-RC | 467..1289 | 16..838 | 4115 | 100 | Plus |
Ipk1-RB | 2636 | CG30295-RB | 467..1289 | 16..838 | 4115 | 100 | Plus |
Ipk1-RA | 2472 | CG30295-RA | 467..1289 | 16..838 | 4115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:25:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20871671..20872005 | 16..350 | 1675 | 100 | Plus |
2R | 25286936 | 2R | 20875231..20875471 | 598..838 | 1190 | 99.6 | Plus |
2R | 25286936 | 2R | 20872539..20872692 | 350..503 | 770 | 100 | Plus |
2R | 25286936 | 2R | 20873650..20873752 | 503..605 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:25:35 has no hits.
BS07416.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:12 Download gff for
BS07416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ipk1-PA | 1..829 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:07 Download gff for
BS07416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30295-PA | 1..829 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:24:16 Download gff for
BS07416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ipk1-RA | 462..1296 | 9..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:56:47 Download gff for
BS07416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ipk1-RA | 462..1296 | 9..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:56:47 Download gff for
BS07416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20871666..20872005 | 9..350 | 99 | -> | Plus |
2R | 20872540..20872692 | 351..503 | 100 | -> | Plus |
2R | 20873651..20873751 | 504..604 | 100 | -> | Plus |
2R | 20875238..20875478 | 605..845 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:24:16 Download gff for
BS07416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16762743..16762983 | 605..845 | 99 | | Plus |
arm_2R | 16759171..16759510 | 9..350 | 99 | -> | Plus |
arm_2R | 16760045..16760197 | 351..503 | 100 | -> | Plus |
arm_2R | 16761156..16761256 | 504..604 | 100 | -> | Plus |
BS07416.complete Sequence
1898 bp assembled on 2008-01-02
GenBank Submission: FJ635851
> BS07416.complete
GAAGTTATCAGTCGACATGACAGCCGAACGAGGACCCCGCTCCCCGGGAA
CGGGGCAAAAACTAAGGCTTAGAGCCACTGAGCCAATGCCACAGTGGACG
GCCAAAAATCTGCACGCCCTGCTGGATCTGCCCGCGGCGATGGAACTGCG
CCAAATTGAGTTGATCTATCGGGCGGAGGGTAATGCAAATTTGGTGCTCG
CCCTGCCGCAATTTAAAAAAGTTTTACGTTTGCCAAAAATGATATCCAGC
AGACTGCGCCAGGCGGCGCACCAGCGGCACGAGCTGGCGGATGAGGTTGC
TCGGCCGGAAGGGCAGCGTGTCTCATCCGAAAGAGCTGGAACTGAAAATG
CTGGCGACTTGACAATGCCGGATTTTATGGCTTATATCGGGATAATGCGC
CGTCTATTAGGAAATGAGTTTGTCTGCGGAGCGGATATTGTTGCCATACC
AAAGGAAGACGATAGATTCTGGATAAACGAGCATATACGCGCCCAAAGAC
CGGTTTCGCGTCTGGATAAGGAATTTGTGGGGCCATTCGGCCTGCTGCTG
CCAGATGTGACCCAATTGCCTGCCACGTTCGATGTTTTACTTGCCAATTT
ACAGGCAAAGGGCACAACAGGAGATGAAAGTGGAGCTGCAGCGGGCGTAG
GAGATGGCGGTGGCGTTGGCCGTGGAGCAGGAACAAGGACGAAAAACAGG
AGCGCTGTCCGTCGTCTGGGCGATACATATGCCATCGAAATAAAACCCAA
ACAAGGCTGGCTTCAGTTGGCAAGTGATGTCAACGATTTATTTGATTTAA
TGCCATCGGGGGCAGTGACAAAGCCAAAGGAGACGACCTGCAATCAGGAG
GAGAATGAGCCCTCTGCCCGGGACAAGTGCTGGTGTCGCTTTTGCAGCAT
GCAACTGCTGAAGATGCACAATGGGAAAATCAAACGTTTGGGCCACTACT
GTCCGCTGGATCTATTTTCCGGTACACCCAGTCGTATGCTCGATGCCTTG
GATGCACTTCTCGCCTGCCCGCAAAATAATTTACGTGTGTTTCAGAACAG
CAATTTAATTTATGGCGATCACGCGAATTCGATTTCCTTCGATGAATTGA
GCTCGCGTGTCTTTCCCGGTGAAATTATGGTGCTTATAAAACATTTGCTG
GTGGCCTGTCTGCTAAGGGAATACGAGCACCCGGAATCCAAACGAGCAGA
GGGCTCCAATCAGAGCCAGAAGCAGCAGCAGGAGCAGCCGGAGCCGGAGC
AGCTGAATCAGAGTCGCGTTTCTATTGCGGCGACGGAGACAAAGGCCGGA
GCTGCTGGAATTGGCGCCGCTAATGTTGTCCTGCCACTCGGAGGCAGGGC
AGCCGCCCCTGTTGTCACTGCCGGTCAATCCTCGACGCGGACAAGAGCAG
CTGCTGCAACAGCCACGACCCAAAGGTACACAAAAGTGGCCAGAGTGGAA
ACAACAATAACTAGACAGGCAGCCACCTCGATGGCAGCAGGACCAGCATC
GAGCAGCCAACTGTCCGGCAATGTGTTGGCAACGGCAACGGCAACGGCAA
CGGCTACGGCAATGGCAACTTCAGGTCGAACGGAAACAAAAACGGAACCG
GAAACTCCGGCTGAGGCTGCTAGTACGACAAGTCGCAACGTGAATCAGAA
TGAAAGCCAAAAACTGAATCGAAATGAGCCTGCGAATCAAACTCAAGCGC
AAAACAACAAAACGGAAATATTTCGCTTACCAAAAAATTGTGTGCTGCAA
AAAATTTTGAATTTGCAATTGCTGGTAAAGGTAAGCCAACCAATCAAACT
GCTGCCCAAACTACTCAGTCTCTGTCCGTTTGGGTTTGTTTATTCTGCCT
GCCCCCCAGAGAACCTTGGCAATTGCAGATAGAAGCTTTCTAGACCAT
BS07416.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:39:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ipk1-RA | 1866 | CG30295-PA | 1..1866 | 17..1882 | 9330 | 100 | Plus |
Ipk1-RC | 2148 | CG30295-PC | 1..1764 | 17..1780 | 8820 | 100 | Plus |
Ipk1-RB | 2151 | CG30295-PB | 1..1764 | 17..1780 | 8820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:39:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ipk1-RA | 2472 | CG30295-RA | 467..2333 | 16..1882 | 9335 | 100 | Plus |
Ipk1-RC | 2633 | CG30295-RC | 467..2231 | 16..1780 | 8825 | 100 | Plus |
Ipk1-RB | 2636 | CG30295-RB | 467..2231 | 16..1780 | 8825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:39:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20877617..20878323 | 1176..1882 | 3535 | 100 | Plus |
2R | 25286936 | 2R | 20871671..20872005 | 16..350 | 1675 | 100 | Plus |
2R | 25286936 | 2R | 20875231..20875546 | 598..913 | 1565 | 99.7 | Plus |
2R | 25286936 | 2R | 20872539..20872692 | 350..503 | 770 | 100 | Plus |
2R | 25286936 | 2R | 20876474..20876621 | 972..1119 | 740 | 100 | Plus |
2R | 25286936 | 2R | 20873650..20873752 | 503..605 | 515 | 100 | Plus |
2R | 25286936 | 2R | 20875603..20875663 | 912..972 | 305 | 100 | Plus |
2R | 25286936 | 2R | 20877254..20877312 | 1119..1177 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:39:16 has no hits.
BS07416.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:25 Download gff for
BS07416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ipk1-RA | 1..1866 | 17..1882 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:34 Download gff for
BS07416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ipk1-RA | 453..2318 | 17..1882 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:34 Download gff for
BS07416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ipk1-RA | 468..2333 | 17..1882 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:25 Download gff for
BS07416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ipk1-RA | 447..2318 | 9..1882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:44 Download gff for
BS07416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ipk1-RA | 468..2333 | 17..1882 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:44 Download gff for
BS07416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20871672..20872005 | 17..350 | 100 | -> | Plus |
2R | 20872540..20872692 | 351..503 | 100 | -> | Plus |
2R | 20873651..20873751 | 504..604 | 100 | -> | Plus |
2R | 20875238..20875546 | 605..913 | 100 | -> | Plus |
2R | 20875605..20875663 | 914..972 | 100 | -> | Plus |
2R | 20876475..20876621 | 973..1119 | 100 | -> | Plus |
2R | 20877255..20877312 | 1120..1177 | 100 | -> | Plus |
2R | 20877619..20878323 | 1178..1882 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:34 Download gff for
BS07416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16759177..16759510 | 17..350 | 100 | -> | Plus |
arm_2R | 16760045..16760197 | 351..503 | 100 | -> | Plus |
arm_2R | 16761156..16761256 | 504..604 | 100 | -> | Plus |
arm_2R | 16762743..16763051 | 605..913 | 100 | -> | Plus |
arm_2R | 16763110..16763168 | 914..972 | 100 | -> | Plus |
arm_2R | 16763980..16764126 | 973..1119 | 100 | -> | Plus |
arm_2R | 16764760..16764817 | 1120..1177 | 100 | -> | Plus |
arm_2R | 16765124..16765828 | 1178..1882 | 100 | | Plus |
BS07416.pep Sequence
Translation from 16 to 1881
> BS07416.pep
MTAERGPRSPGTGQKLRLRATEPMPQWTAKNLHALLDLPAAMELRQIELI
YRAEGNANLVLALPQFKKVLRLPKMISSRLRQAAHQRHELADEVARPEGQ
RVSSERAGTENAGDLTMPDFMAYIGIMRRLLGNEFVCGADIVAIPKEDDR
FWINEHIRAQRPVSRLDKEFVGPFGLLLPDVTQLPATFDVLLANLQAKGT
TGDESGAAAGVGDGGGVGRGAGTRTKNRSAVRRLGDTYAIEIKPKQGWLQ
LASDVNDLFDLMPSGAVTKPKETTCNQEENEPSARDKCWCRFCSMQLLKM
HNGKIKRLGHYCPLDLFSGTPSRMLDALDALLACPQNNLRVFQNSNLIYG
DHANSISFDELSSRVFPGEIMVLIKHLLVACLLREYEHPESKRAEGSNQS
QKQQQEQPEPEQLNQSRVSIAATETKAGAAGIGAANVVLPLGGRAAAPVV
TAGQSSTRTRAAAATATTQRYTKVARVETTITRQAATSMAAGPASSSQLS
GNVLATATATATATAMATSGRTETKTEPETPAEAASTTSRNVNQNESQKL
NRNEPANQTQAQNNKTEIFRLPKNCVLQKILNLQLLVKVSQPIKLLPKLL
SLCPFGFVYSACPPENLGNCR*
BS07416.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:18:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ipk1-PA | 621 | CG30295-PA | 1..621 | 1..621 | 3178 | 100 | Plus |
Ipk1-PC | 715 | CG30295-PC | 1..588 | 1..588 | 2996 | 100 | Plus |
Ipk1-PB | 716 | CG30295-PB | 1..588 | 1..588 | 2996 | 100 | Plus |
Ipk1-PD | 576 | CG30295-PD | 57..448 | 197..588 | 1992 | 100 | Plus |