Clone Sequence Records
BS07420.3prime Sequence
879 bp (792 high quality bases) assembled on 2006-01-06
> BS07420.3prime
ATGGTCTAGAAAGCTTCTAAGTGCTGATATGATTTGAGCTCTCTTTGGCC
ACTTCGATAGGATCGGGGTACTCCGGCTGCAAGTGCAGAGCGCCCAGGAG
TTTCCGCCTACCGTGGACGTACCACAACATCTCTCGGTAGGATCGCGGGA
GGACTTCGTCCAGCACCTTGTCCGCCCGATAGGTCAAGTAGAAGACATTG
GTGGTCTGCACTTTGCCGCTCTTGGCATCCCAAATCTGGGCCACGGTCAT
CAGCTGGACGTAGTTCTGGGCGGCGTAAACAACGTGGGCGGTGAGCTGGA
GGAACCGATCCACATGCACCGGGTGCATGAAACTAATGTCCGAGATGCAC
CTGAGGGTGGGCCGATCGCCCAGATAGATGCTAGCCATTATGAAGCTGAT
TTCAACGGCCTGGCGCATGAGATAGCCCCCAAAGATGGTGTTCTGCGCAT
TCCTGTTCTCCGGAAATGGAGCAATCATCGTAGACTGCATAGAGTCCTCC
ATCCAGCGGCATTTCGGCGGCAGCACACGCTTGTTGAGATCCATACTATT
GGCTGGGGTGGTTCTCTTGAGGATCTCGTACATGAGGGCCTGTTCGTGCT
CCCTGGGCGGCGAGTTGAACACTGAGTCCATGGCAGAAGACTTGCGCACT
TTTTGCCGCTTCTCTGCCTGCTCCCAAATGAGCTTCTCGGTTTCATCGCC
AACCTCTATAGGATTAATGGGAGCCGGTCCCGTATTGGTGGCATTTCTGG
CCACCATGACGAAGATTGCTTTTGTTACATCAATATATTCGCCGTGGGCC
AACTGCCTCACATAGATGGTAATCTCCATGGAGCTCCGCCCCGCCCACGA
GATGTGACCACTGATCTCGATGTCCTGGT
BS07420.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1774-PA | 1419 | CG1774-RA | 557..1419 | 879..17 | 4315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:04:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1774-RB | 1731 | CG1774-RB | 745..1609 | 879..15 | 4325 | 100 | Minus |
| CG1774-RA | 1860 | CG1774-RA | 874..1738 | 879..15 | 4325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:04:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31593733..31594597 | 879..15 | 4325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 08:04:47 has no hits.
BS07420.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:13 Download gff for
BS07420.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1774-PA | 557..1419 | 17..879 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:08 Download gff for
BS07420.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1774-PA | 557..1419 | 17..879 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:20:20 Download gff for
BS07420.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1774-RA | 933..1799 | 11..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:48:39 Download gff for
BS07420.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1774-RA | 874..1740 | 11..879 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:48:39 Download gff for
BS07420.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31593733..31594599 | 11..879 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:20:20 Download gff for
BS07420.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27419455..27420321 | 11..879 | 99 | | Minus |
BS07420.5prime Sequence
832 bp (756 high quality bases) assembled on 2006-01-06
> BS07420.5prime
GAAGTTATCAGTCGACATGCTGTGTACCTTGGCACGGAGTTTTGGAACGG
CGCTGGCGAGGAGGAGCTCTTGGTCGACTGCCCGGCGAAGGCGACTGCTG
GCCACAAGTCCCCCCCCTTTGGCGAGCCAGCAGATGCCCAGGAGCTATAC
GCTAGACAACGGACCCAAGGTGAAGTCCGATCATCGCTCTGGAACGATGG
TGGAGGTGGCTCGTGTCATTCGCGAGCAATCCGGCGTGGACGTGGGATAC
CATACGATTCCCAAGCCCCGAGATCATCTCCTGCAGCACGAGCCGAAGAG
GGAGGAGCTTCCACCAAGAACTATGCTGGATTCGCACACCACGGCCATTC
TGCCCCTGAGCTCCAGTGAGCTAATCCGCGAGAGCTACGTGAATCACCTG
GGAAGGGTGAGATTGGGCCGAATTATGGAGGAGTTGGACATGTTTGCCGT
ATGGATCTGCCATCGTCATGTGAAGCTGCCCAAGCTGCCGAAGGGAGTGC
CTTTGCCTTACACCTTTGTCACGTTGCTGGTCGACAAAGTGGAGTTCACC
AACCTGGAGCGGTTGCAGGTCAACCAGGACATCGAGATCAGTGGTCACAT
CTCGTGGGCGGGGCGGAGCTCCATGGAGATTACCATCTATGTGAGGCAGT
TGGCCCACGGCGAATATATTGATGTAACAAAAGCAATCTTCGTCATGGTG
GCCAGAAATGCCACCAATACGGGACCGGCTCCCATTAATCCTATAGAGGT
TGGCGATGAAACCGAGAAGCTCATTTGGGAGCAGGCAGAGAAGCGGCAAA
AAGTGCGCAAGTCTTCTGCCATGGACTCAGTG
BS07420.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1774-PA | 1419 | CG1774-RA | 1..816 | 17..832 | 4080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:21:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1774-RB | 1731 | CG1774-RB | 189..1004 | 17..832 | 4080 | 100 | Plus |
| CG1774-RA | 1860 | CG1774-RA | 318..1133 | 17..832 | 4080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:21:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31593366..31593992 | 206..832 | 3135 | 100 | Plus |
| 3R | 32079331 | 3R | 31593120..31593309 | 17..206 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:21:51 has no hits.
BS07420.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:14 Download gff for
BS07420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1774-PA | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:10 Download gff for
BS07420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1774-PA | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:59:32 Download gff for
BS07420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1774-RA | 377..1192 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:10:22 Download gff for
BS07420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1774-RA | 318..1133 | 17..832 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:10:22 Download gff for
BS07420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31593120..31593309 | 17..206 | 100 | -> | Plus |
| 3R | 31593367..31593992 | 207..832 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:59:32 Download gff for
BS07420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27418842..27419031 | 17..206 | 100 | -> | Plus |
| arm_3R | 27419089..27419714 | 207..832 | 100 | | Plus |
BS07420.complete Sequence
1451 bp (1451 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635852
> BS07420.complete
GAAGTTATCAGTCGACATGCTGTGTACCTTGGCACGGAGTTTTGGAACGG
CGCTGGCGAGGAGGAGCTCTTGGTCGACTGCCCGGCGAAGGCGACTGCTG
GCCACAAGTCCCCCCCCTTTGGCGAGCCAGCAGATGCCCAGGAGCTATAC
GCTAGACAACGGACCCAAGGTGAAGTCCGATCATCGCTCTGGAACGATGG
TGGAGGTGGCTCGTGTCATTCGCGAGCAATCCGGCGTGGACGTGGGATAC
CATACGATTCCCAAGCCCCGAGATCATCTCCTGCAGCACGAGCCGAAGAG
GGAGGAGCTTCCACCAAGAACTATGCTGGATTCGCACACCACGGCCATTC
TGCCCCTGAGCTCCAGTGAGCTAATCCGCGAGAGCTACGTGAATCACCTG
GGAAGGGTGAGATTGGGCCGAATTATGGAGGAGTTGGACATGTTTGCCGT
ATGGATCTGCCATCGTCATGTGAAGCTGCCCAAGCTGCCGAAGGGAGTGC
CTTTGCCTTACACCTTTGTCACGTTGCTGGTCGACAAAGTGGAGTTCACC
AACCTGGAGCGGTTGCAGGTCAACCAGGACATCGAGATCAGTGGTCACAT
CTCGTGGGCGGGGCGGAGCTCCATGGAGATTACCATCTATGTGAGGCAGT
TGGCCCACGGCGAATATATTGATGTAACAAAAGCAATCTTCGTCATGGTG
GCCAGAAATGCCACCAATACGGGACCGGCTCCCATTAATCCTATAGAGGT
TGGCGATGAAACCGAGAAGCTCATTTGGGAGCAGGCAGAGAAGCGGCAAA
AAGTGCGCAAGTCTTCTGCCATGGACTCAGTGTTCAACTCGCCGCCCAGG
GAGCACGAACAGGCCCTCATGTACGAGATCCTCAAGAGAACCACCCCAGC
CAATAGTATGGATCTCAACAAGCGTGTGCTGCCGCCGAAATGCCGCTGGA
TGGAGGACTCTATGCAGTCTACGATGATTGCTCCATTTCCGGAGAACAGG
AATGCGCAGAACACCATCTTTGGGGGCTATCTCATGCGCCAGGCCGTTGA
AATCAGCTTCATAATGGCTAGCATCTATCTGGGCGATCGGCCCACCCTCA
GGTGCATCTCGGACATTAGTTTCATGCACCCGGTGCATGTGGATCGGTTC
CTCCAGCTCACCGCCCACGTTGTTTACGCCGCCCAGAACTACGTCCAGCT
GATGACCGTGGCCCAGATTTGGGATGCCAAGAGCGGCAAAGTGCAGACCA
CCAATGTCTTCTACTTGACCTATCGGGCGGACAAGGTGCTGGACGAAGTC
CTCCCGCGATCCTACCGAGAGATGTTGTGGTACGTCCACGGTAGGCGGAA
ACTCCTGGGCGCTCTGCACTTGCAGCCGGAGTACCCCGATCCTATCGAAG
TGGCCAAAGAGAGCTCAAATCATATCAGCACTTAGAAGCTTTCTAGACCA
T
BS07420.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:18:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1774-RB | 1419 | CG1774-PB | 1..1419 | 17..1435 | 7095 | 100 | Plus |
| CG1774-RA | 1419 | CG1774-PA | 1..1419 | 17..1435 | 7095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:18:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1774-RB | 1731 | CG1774-RB | 189..1609 | 17..1437 | 7105 | 100 | Plus |
| CG1774-RA | 1860 | CG1774-RA | 318..1738 | 17..1437 | 7105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:18:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31593366..31594597 | 206..1437 | 6160 | 100 | Plus |
| 3R | 32079331 | 3R | 31593120..31593309 | 17..206 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:18:44 has no hits.
BS07420.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:01 Download gff for
BS07420.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1774-RA | 1..1419 | 17..1435 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:07 Download gff for
BS07420.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1774-RA | 377..1799 | 17..1441 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:26:49 Download gff for
BS07420.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1774-RA | 377..1795 | 17..1435 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:02 Download gff for
BS07420.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1774-RA | 377..1799 | 17..1441 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:33 Download gff for
BS07420.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1774-RA | 318..1736 | 17..1435 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:33 Download gff for
BS07420.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31593120..31593309 | 17..206 | 100 | -> | Plus |
| 3R | 31593367..31594595 | 207..1435 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:26:49 Download gff for
BS07420.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27418842..27419031 | 17..206 | 100 | -> | Plus |
| arm_3R | 27419089..27420317 | 207..1435 | 100 | | Plus |
BS07420.pep Sequence
Translation from 16 to 1434
> BS07420.pep
MLCTLARSFGTALARRSSWSTARRRRLLATSPPPLASQQMPRSYTLDNGP
KVKSDHRSGTMVEVARVIREQSGVDVGYHTIPKPRDHLLQHEPKREELPP
RTMLDSHTTAILPLSSSELIRESYVNHLGRVRLGRIMEELDMFAVWICHR
HVKLPKLPKGVPLPYTFVTLLVDKVEFTNLERLQVNQDIEISGHISWAGR
SSMEITIYVRQLAHGEYIDVTKAIFVMVARNATNTGPAPINPIEVGDETE
KLIWEQAEKRQKVRKSSAMDSVFNSPPREHEQALMYEILKRTTPANSMDL
NKRVLPPKCRWMEDSMQSTMIAPFPENRNAQNTIFGGYLMRQAVEISFIM
ASIYLGDRPTLRCISDISFMHPVHVDRFLQLTAHVVYAAQNYVQLMTVAQ
IWDAKSGKVQTTNVFYLTYRADKVLDEVLPRSYREMLWYVHGRRKLLGAL
HLQPEYPDPIEVAKESSNHIST*
BS07420.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1774-PB | 472 | CG1774-PB | 1..472 | 1..472 | 2457 | 100 | Plus |
| CG1774-PA | 472 | CG1774-PA | 1..472 | 1..472 | 2457 | 100 | Plus |
| CG1635-PA | 448 | CG1635-PA | 6..440 | 13..445 | 1115 | 46.9 | Plus |
| CG1638-PB | 443 | CG1638-PB | 32..441 | 38..449 | 1053 | 47.3 | Plus |
| CG13771-PA | 451 | CG13771-PA | 9..423 | 25..444 | 934 | 44.4 | Plus |
