Clone Sequence Records
BS07421.3prime Sequence
962 bp (823 high quality bases) assembled on 2006-01-06
> BS07421.3prime
ATGGTCTAGAAAGCTTTTAGCGGGTTGAGAGCGGGGTGCGAATCTGGAGG
CTGGAGGTGGGGCCCAGCAGGACGACCAGCAGGACCGCCAGGAGCAACAG
GGGCAGAGGGGGCAGGAGCAGCCTCGAGCCCAGCTCGTGCTGCATGGCCG
CGTGCTGCTCACTTTTAATGATATGCACAAAGACGCTGTCAGAATTCGAG
TTGTCCGCGGAGCAGGTGTAGTTGCCCGAGTCCGTGTGCTGGACTCGCGA
TATCACCAGGTTGCTGGTCTTCATCTGCTGCTCGGACTCTACGCGGATGC
CACCCCGCGCCGAGTCGCTTACCAGCTCCGTGTCCTTGTGCCACAGCATG
TGCGTGTAGGGTCCTGGAGCCTGGGGTGCGATGCACGTCAGATTGATGTC
GCTGCCACTCTGGATGAACAGCTCGCGGTTGGCCAGGATCTGAGCCTTGG
AGGTCACGACGACCAGCTTGTAGGCCAGACTGATCTTGGGCTCCGTGGAC
ACCTGGCACTCGTAGACGCCCGCATCTCTCTGCTGCACCGAAACGATCTT
GAGCACCCACTCGTCGGAGTTGTCGATGTGCCGCGCCAGAAAGCGCTGAT
CGTTCGTGTAGGTCATGATGCCGATGGTCAGGATGTGGAGATCCCGTTGT
CGTATCCAGGACACCGCCCTGTCGCCCAGGTGGCGAACGCGGCAGTGGAG
ACGGGCGGTGGTGCCCAAAGCTGCAATAACCTCCCGATCTGTTGTGTTGT
CAAACACGGGATCGATGGCATCGTAATTATCTGGTATCAAGTTGGACAAT
TCCTCGGCGGCGGCCAGATGGCCGAAGTATTGGCTGCTGCGCCGGCTCTG
CTTGTCGACTGGAGCGGTTAATCCCATGATCACGAGCAGCGCCATAAAGT
ATTCCACCAACATTTCATGCGCAATTTGTGGGGCTCTCGAATTACTTATA
ACTTTTCCTATG
BS07421.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5308-PA | 1011 | dpr5-RA | 66..1011 | 962..17 | 4730 | 100 | Minus |
CG5308-PB | 897 | dpr5-RB | 1..897 | 913..17 | 4485 | 100 | Minus |
CG33512-PA | 891 | dpr4-RA | 297..332 | 515..480 | 155 | 97.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:10:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr5-RA | 1817 | CG5308-RA | 435..1380 | 962..17 | 4730 | 100 | Minus |
dpr5-RB | 1419 | CG5308-RB | 46..982 | 953..17 | 4685 | 100 | Minus |
dpr4-RB | 2994 | CG33512-RB | 1201..1515 | 697..383 | 330 | 74.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:10:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11503411..11503780 | 823..454 | 1850 | 100 | Minus |
3R | 32079331 | 3R | 11504295..11504552 | 453..196 | 1290 | 100 | Minus |
3R | 32079331 | 3R | 11505274..11505452 | 195..17 | 895 | 100 | Minus |
3R | 32079331 | 3R | 11501115..11501246 | 953..822 | 660 | 100 | Minus |
3R | 32079331 | 3R | 11535995..11536180 | 480..665 | 255 | 75.8 | Plus |
Blast to na_te.dros performed on 2015-02-03 12:10:15 has no hits.
BS07421.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:15 Download gff for
BS07421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr5-PA | 66..1011 | 17..962 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:12 Download gff for
BS07421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5308-PA | 66..1011 | 17..962 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:47:10 Download gff for
BS07421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr5-RA | 435..1382 | 13..962 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:39:02 Download gff for
BS07421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr5-RA | 435..1382 | 13..962 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:39:02 Download gff for
BS07421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11501115..11501245 | 823..953 | 100 | -> | Minus |
3R | 11503412..11503780 | 454..822 | 100 | -> | Minus |
3R | 11504295..11504552 | 196..453 | 100 | -> | Minus |
3R | 11505274..11505454 | 13..195 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:47:10 Download gff for
BS07421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7329134..7329502 | 454..822 | 100 | -> | Minus |
arm_3R | 7326837..7326967 | 823..953 | 100 | -> | Minus |
arm_3R | 7330017..7330274 | 196..453 | 100 | -> | Minus |
arm_3R | 7330996..7331176 | 13..195 | 98 | | Minus |
BS07421.5prime Sequence
928 bp (871 high quality bases) assembled on 2006-01-06
> BS07421.5prime
GAAGTTATCAGTCGACATGAGATGGCGGCACGCAGTTCGCGCTACATTTA
CTTCGACCACGGCCACCGAATCTAGTCCGCTCATAGGAAAAGTTATAAGT
AATTCGAGAGCCCCACAAATTGCGCATGAAATGTTGGTGGAATACTTTAT
GGCGCTGCTCGTGATCATGGGATTAACCGCTCCAGTCGACAAGCAGAGCC
GGCGCAGCAGCCAATACTTCGGCCATCTGGCCGCCGCCGAGGAATTGTCC
AACTTGATACCAGATAATTACGATGCCATCGATCCCGTGTTTGACAACAC
AACAGATCGGGAGGTTATTGCAGCTTTGGGCACCACCGCCCGTCTCCACT
GCCGCGTTCGCCACCTGGGCGACAGGGCGGTGTCCTGGATACGACAACGG
GATCTCCACATCCTGACCATCGGCATCATGACCTACACGAACGATCAGCG
CTTTCTGGCGCGGCACATCGACAACTCCGACGAGTGGGTGCTCAAGATCG
TTTCGGTGCAGCAGAGAGATGCGGGCGTCTACGAGTGCCAGGTGTCCACG
GAGCCCAAGATCAGTCTGGCCTACAAGCTGGTCGTCGTGACCTCCAAGGC
TCAGATCCTGGCCAACCGCGAGCTGTTCATCCAGAGTGGCAGCGACATCA
ATCTGACGTGCATCGCACCCCAGGCTCCAGGACCCTACACGCACATGCTG
TGGCACAAGGACACGGAGCTGGTAAGCGACTCGGCGCGGGGTGGCATCCG
CGTAGAGTCCGAGCAGCAGATGAAGACCAGCAACCTGGTGATATCGCGAG
TCCAGCACACGGACTCGGGCAACTACACCTGCTCCGCGGACAACTCGAAT
TCTGACAGCGTCTTTGTGCATATCATTAAAAGTGAGCAGCACGCGGCCAT
GCAGCACGAGCTGGGCTCGAGGCTGCTC
BS07421.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5308-PA | 1011 | dpr5-RA | 1..912 | 17..928 | 4560 | 100 | Plus |
CG5308-PB | 897 | dpr5-RB | 1..798 | 131..928 | 3990 | 100 | Plus |
CG33512-PA | 891 | dpr4-RA | 297..332 | 529..564 | 155 | 97.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:21:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr5-RA | 1817 | CG5308-RA | 369..1281 | 16..928 | 4565 | 100 | Plus |
dpr5-RB | 1419 | CG5308-RB | 46..883 | 91..928 | 4190 | 100 | Plus |
dpr4-RB | 2994 | CG33512-RB | 1201..1515 | 347..661 | 330 | 74.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:21:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11503411..11503780 | 221..590 | 1850 | 100 | Plus |
3R | 32079331 | 3R | 11504295..11504552 | 591..848 | 1290 | 100 | Plus |
3R | 32079331 | 3R | 11501115..11501246 | 91..222 | 660 | 100 | Plus |
3R | 32079331 | 3R | 11505274..11505353 | 849..928 | 400 | 100 | Plus |
3R | 32079331 | 3R | 11500352..11500428 | 16..92 | 385 | 100 | Plus |
3R | 32079331 | 3R | 11535995..11536180 | 564..379 | 255 | 75.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:21:43 has no hits.
BS07421.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:16 Download gff for
BS07421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr5-PA | 1..912 | 17..928 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:13 Download gff for
BS07421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5308-PA | 1..912 | 17..928 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:23:24 Download gff for
BS07421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr5-RA | 367..1281 | 13..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:56:07 Download gff for
BS07421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr5-RA | 367..1281 | 13..928 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:56:07 Download gff for
BS07421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11500350..11500428 | 13..92 | 98 | -> | Plus |
3R | 11501117..11501245 | 93..221 | 100 | -> | Plus |
3R | 11503412..11503780 | 222..590 | 100 | -> | Plus |
3R | 11504295..11504552 | 591..848 | 100 | -> | Plus |
3R | 11505274..11505353 | 849..928 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:23:24 Download gff for
BS07421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7326072..7326150 | 13..92 | 98 | -> | Plus |
arm_3R | 7326839..7326967 | 93..221 | 100 | -> | Plus |
arm_3R | 7329134..7329502 | 222..590 | 100 | -> | Plus |
arm_3R | 7330017..7330274 | 591..848 | 100 | -> | Plus |
arm_3R | 7330996..7331075 | 849..928 | 100 | | Plus |
BS07421.complete Sequence
1043 bp (1043 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635853
> BS07421.complete
GAAGTTATCAGTCGACATGAGATGGCGGCACGCAGTTCGCGCTACATTTA
CTTCGACCACGGCCACCGAATCTAGTCCGCTCATAGGAAAAGTTATAAGT
AATTCGAGAGCCCCACAAATTGCGCATGAAATGTTGGTGGAATACTTTAT
GGCGCTGCTCGTGATCATGGGATTAACCGCTCCAGTCGACAAGCAGAGCC
GGCGCAGCAGCCAATACTTCGGCCATCTGGCCGCCGCCGAGGAATTGTCC
AACTTGATACCAGATAATTACGATGCCATCGATCCCGTGTTTGACAACAC
AACAGATCGGGAGGTTATTGCAGCTTTGGGCACCACCGCCCGTCTCCACT
GCCGCGTTCGCCACCTGGGCGACAGGGCGGTGTCCTGGATACGACAACGG
GATCTCCACATCCTGACCATCGGCATCATGACCTACACGAACGATCAGCG
CTTTCTGGCGCGGCACATCGACAACTCCGACGAGTGGGTGCTCAAGATCG
TTTCGGTGCAGCAGAGAGATGCGGGCGTCTACGAGTGCCAGGTGTCCACG
GAGCCCAAGATCAGTCTGGCCTACAAGCTGGTCGTCGTGACCTCCAAGGC
TCAGATCCTGGCCAACCGCGAGCTGTTCATCCAGAGTGGCAGCGACATCA
ATCTGACGTGCATCGCACCCCAGGCTCCAGGACCCTACACGCACATGCTG
TGGCACAAGGACACGGAGCTGGTAAGCGACTCGGCGCGGGGTGGCATCCG
CGTAGAGTCCGAGCAGCAGATGAAGACCAGCAACCTGGTGATATCGCGAG
TCCAGCACACGGACTCGGGCAACTACACCTGCTCCGCGGACAACTCGAAT
TCTGACAGCGTCTTTGTGCATATCATTAAAAGTGAGCAGCACGCGGCCAT
GCAGCACGAGCTGGGCTCGAGGCTGCTCCTGCCCCCTCTGCCCCTGTTGC
TCCTGGCGGTCCTGCTGGTCGTCCTGCTGGGCCCCACCTCCAGCCTCCAG
ATTCGCACCCCGCTCTCAACCCGCTAAAAGCTTTCTAGACCAT
BS07421.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:15:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr5-RA | 1011 | CG5308-PA | 1..1011 | 17..1027 | 5055 | 100 | Plus |
dpr5-RB | 897 | CG5308-PB | 1..897 | 131..1027 | 4485 | 100 | Plus |
dpr4-RB | 972 | CG33512-PB | 196..510 | 347..661 | 330 | 73.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:15:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr5-RA | 1817 | CG5308-RA | 369..1380 | 16..1027 | 5060 | 100 | Plus |
dpr5-RB | 1419 | CG5308-RB | 46..982 | 91..1027 | 4685 | 100 | Plus |
dpr4-RB | 2994 | CG33512-RB | 1201..1515 | 347..661 | 330 | 73.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:15:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11503411..11503780 | 221..590 | 1850 | 100 | Plus |
3R | 32079331 | 3R | 11504295..11504552 | 591..848 | 1290 | 100 | Plus |
3R | 32079331 | 3R | 11505274..11505452 | 849..1027 | 895 | 100 | Plus |
3R | 32079331 | 3R | 11501115..11501246 | 91..222 | 660 | 100 | Plus |
3R | 32079331 | 3R | 11500352..11500428 | 16..92 | 385 | 100 | Plus |
3R | 32079331 | 3R | 11535995..11536180 | 564..379 | 255 | 75.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:15:24 has no hits.
BS07421.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:03 Download gff for
BS07421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr5-RA | 1..1011 | 17..1027 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:09 Download gff for
BS07421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr5-RA | 367..1382 | 13..1031 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:55 Download gff for
BS07421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr5-RA | 370..1378 | 17..1025 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:03 Download gff for
BS07421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr5-RA | 367..1382 | 13..1031 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:42 Download gff for
BS07421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr5-RA | 370..1378 | 17..1025 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:42 Download gff for
BS07421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11504295..11504552 | 591..848 | 100 | -> | Plus |
3R | 11505274..11505450 | 849..1025 | 100 | | Plus |
3R | 11503412..11503780 | 222..590 | 100 | -> | Plus |
3R | 11500353..11500428 | 17..92 | 100 | -> | Plus |
3R | 11501117..11501245 | 93..221 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:55 Download gff for
BS07421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7326075..7326150 | 17..92 | 100 | -> | Plus |
arm_3R | 7326839..7326967 | 93..221 | 100 | -> | Plus |
arm_3R | 7329134..7329502 | 222..590 | 100 | -> | Plus |
arm_3R | 7330017..7330274 | 591..848 | 100 | -> | Plus |
arm_3R | 7330996..7331172 | 849..1025 | 100 | | Plus |
BS07421.pep Sequence
Translation from 16 to 1026
> BS07421.pep
MRWRHAVRATFTSTTATESSPLIGKVISNSRAPQIAHEMLVEYFMALLVI
MGLTAPVDKQSRRSSQYFGHLAAAEELSNLIPDNYDAIDPVFDNTTDREV
IAALGTTARLHCRVRHLGDRAVSWIRQRDLHILTIGIMTYTNDQRFLARH
IDNSDEWVLKIVSVQQRDAGVYECQVSTEPKISLAYKLVVVTSKAQILAN
RELFIQSGSDINLTCIAPQAPGPYTHMLWHKDTELVSDSARGGIRVESEQ
QMKTSNLVISRVQHTDSGNYTCSADNSNSDSVFVHIIKSEQHAAMQHELG
SRLLLPPLPLLLLAVLLVVLLGPTSSLQIRTPLSTR*
BS07421.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr5-PA | 336 | CG5308-PA | 1..336 | 1..336 | 1708 | 100 | Plus |
dpr5-PB | 298 | CG5308-PB | 1..298 | 39..336 | 1515 | 100 | Plus |
dpr4-PB | 323 | CG33512-PB | 45..279 | 90..324 | 670 | 56.2 | Plus |
dpr8-PB | 344 | CG32600-PB | 42..297 | 90..336 | 485 | 41.8 | Plus |
dpr8-PA | 344 | CG32600-PA | 42..297 | 90..336 | 485 | 41.8 | Plus |