Clone BS07421 Report

Search the DGRC for BS07421

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:21
Vector:pDNR-Dual
Associated Gene/Transcriptdpr5-RA
Protein status:BS07421.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07421.3prime Sequence

962 bp (823 high quality bases) assembled on 2006-01-06

> BS07421.3prime
ATGGTCTAGAAAGCTTTTAGCGGGTTGAGAGCGGGGTGCGAATCTGGAGG
CTGGAGGTGGGGCCCAGCAGGACGACCAGCAGGACCGCCAGGAGCAACAG
GGGCAGAGGGGGCAGGAGCAGCCTCGAGCCCAGCTCGTGCTGCATGGCCG
CGTGCTGCTCACTTTTAATGATATGCACAAAGACGCTGTCAGAATTCGAG
TTGTCCGCGGAGCAGGTGTAGTTGCCCGAGTCCGTGTGCTGGACTCGCGA
TATCACCAGGTTGCTGGTCTTCATCTGCTGCTCGGACTCTACGCGGATGC
CACCCCGCGCCGAGTCGCTTACCAGCTCCGTGTCCTTGTGCCACAGCATG
TGCGTGTAGGGTCCTGGAGCCTGGGGTGCGATGCACGTCAGATTGATGTC
GCTGCCACTCTGGATGAACAGCTCGCGGTTGGCCAGGATCTGAGCCTTGG
AGGTCACGACGACCAGCTTGTAGGCCAGACTGATCTTGGGCTCCGTGGAC
ACCTGGCACTCGTAGACGCCCGCATCTCTCTGCTGCACCGAAACGATCTT
GAGCACCCACTCGTCGGAGTTGTCGATGTGCCGCGCCAGAAAGCGCTGAT
CGTTCGTGTAGGTCATGATGCCGATGGTCAGGATGTGGAGATCCCGTTGT
CGTATCCAGGACACCGCCCTGTCGCCCAGGTGGCGAACGCGGCAGTGGAG
ACGGGCGGTGGTGCCCAAAGCTGCAATAACCTCCCGATCTGTTGTGTTGT
CAAACACGGGATCGATGGCATCGTAATTATCTGGTATCAAGTTGGACAAT
TCCTCGGCGGCGGCCAGATGGCCGAAGTATTGGCTGCTGCGCCGGCTCTG
CTTGTCGACTGGAGCGGTTAATCCCATGATCACGAGCAGCGCCATAAAGT
ATTCCACCAACATTTCATGCGCAATTTGTGGGGCTCTCGAATTACTTATA
ACTTTTCCTATG

BS07421.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5308-PA 1011 dpr5-RA 66..1011 962..17 4730 100 Minus
CG5308-PB 897 dpr5-RB 1..897 913..17 4485 100 Minus
CG33512-PA 891 dpr4-RA 297..332 515..480 155 97.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
dpr5-RA 1817 CG5308-RA 435..1380 962..17 4730 100 Minus
dpr5-RB 1419 CG5308-RB 46..982 953..17 4685 100 Minus
dpr4-RB 2994 CG33512-RB 1201..1515 697..383 330 74.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:10:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11503411..11503780 823..454 1850 100 Minus
3R 32079331 3R 11504295..11504552 453..196 1290 100 Minus
3R 32079331 3R 11505274..11505452 195..17 895 100 Minus
3R 32079331 3R 11501115..11501246 953..822 660 100 Minus
3R 32079331 3R 11535995..11536180 480..665 255 75.8 Plus
Blast to na_te.dros performed on 2015-02-03 12:10:15 has no hits.

BS07421.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:15 Download gff for BS07421.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr5-PA 66..1011 17..962 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:12 Download gff for BS07421.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5308-PA 66..1011 17..962 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:47:10 Download gff for BS07421.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr5-RA 435..1382 13..962 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:39:02 Download gff for BS07421.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr5-RA 435..1382 13..962 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:39:02 Download gff for BS07421.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11501115..11501245 823..953 100 -> Minus
3R 11503412..11503780 454..822 100 -> Minus
3R 11504295..11504552 196..453 100 -> Minus
3R 11505274..11505454 13..195 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:47:10 Download gff for BS07421.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7329134..7329502 454..822 100 -> Minus
arm_3R 7326837..7326967 823..953 100 -> Minus
arm_3R 7330017..7330274 196..453 100 -> Minus
arm_3R 7330996..7331176 13..195 98   Minus

BS07421.5prime Sequence

928 bp (871 high quality bases) assembled on 2006-01-06

> BS07421.5prime
GAAGTTATCAGTCGACATGAGATGGCGGCACGCAGTTCGCGCTACATTTA
CTTCGACCACGGCCACCGAATCTAGTCCGCTCATAGGAAAAGTTATAAGT
AATTCGAGAGCCCCACAAATTGCGCATGAAATGTTGGTGGAATACTTTAT
GGCGCTGCTCGTGATCATGGGATTAACCGCTCCAGTCGACAAGCAGAGCC
GGCGCAGCAGCCAATACTTCGGCCATCTGGCCGCCGCCGAGGAATTGTCC
AACTTGATACCAGATAATTACGATGCCATCGATCCCGTGTTTGACAACAC
AACAGATCGGGAGGTTATTGCAGCTTTGGGCACCACCGCCCGTCTCCACT
GCCGCGTTCGCCACCTGGGCGACAGGGCGGTGTCCTGGATACGACAACGG
GATCTCCACATCCTGACCATCGGCATCATGACCTACACGAACGATCAGCG
CTTTCTGGCGCGGCACATCGACAACTCCGACGAGTGGGTGCTCAAGATCG
TTTCGGTGCAGCAGAGAGATGCGGGCGTCTACGAGTGCCAGGTGTCCACG
GAGCCCAAGATCAGTCTGGCCTACAAGCTGGTCGTCGTGACCTCCAAGGC
TCAGATCCTGGCCAACCGCGAGCTGTTCATCCAGAGTGGCAGCGACATCA
ATCTGACGTGCATCGCACCCCAGGCTCCAGGACCCTACACGCACATGCTG
TGGCACAAGGACACGGAGCTGGTAAGCGACTCGGCGCGGGGTGGCATCCG
CGTAGAGTCCGAGCAGCAGATGAAGACCAGCAACCTGGTGATATCGCGAG
TCCAGCACACGGACTCGGGCAACTACACCTGCTCCGCGGACAACTCGAAT
TCTGACAGCGTCTTTGTGCATATCATTAAAAGTGAGCAGCACGCGGCCAT
GCAGCACGAGCTGGGCTCGAGGCTGCTC

BS07421.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5308-PA 1011 dpr5-RA 1..912 17..928 4560 100 Plus
CG5308-PB 897 dpr5-RB 1..798 131..928 3990 100 Plus
CG33512-PA 891 dpr4-RA 297..332 529..564 155 97.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
dpr5-RA 1817 CG5308-RA 369..1281 16..928 4565 100 Plus
dpr5-RB 1419 CG5308-RB 46..883 91..928 4190 100 Plus
dpr4-RB 2994 CG33512-RB 1201..1515 347..661 330 74.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:21:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11503411..11503780 221..590 1850 100 Plus
3R 32079331 3R 11504295..11504552 591..848 1290 100 Plus
3R 32079331 3R 11501115..11501246 91..222 660 100 Plus
3R 32079331 3R 11505274..11505353 849..928 400 100 Plus
3R 32079331 3R 11500352..11500428 16..92 385 100 Plus
3R 32079331 3R 11535995..11536180 564..379 255 75.8 Minus
Blast to na_te.dros performed on 2015-02-13 00:21:43 has no hits.

BS07421.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:16 Download gff for BS07421.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr5-PA 1..912 17..928 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:13 Download gff for BS07421.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5308-PA 1..912 17..928 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:23:24 Download gff for BS07421.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr5-RA 367..1281 13..928 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:56:07 Download gff for BS07421.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr5-RA 367..1281 13..928 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:56:07 Download gff for BS07421.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11500350..11500428 13..92 98 -> Plus
3R 11501117..11501245 93..221 100 -> Plus
3R 11503412..11503780 222..590 100 -> Plus
3R 11504295..11504552 591..848 100 -> Plus
3R 11505274..11505353 849..928 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:23:24 Download gff for BS07421.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7326072..7326150 13..92 98 -> Plus
arm_3R 7326839..7326967 93..221 100 -> Plus
arm_3R 7329134..7329502 222..590 100 -> Plus
arm_3R 7330017..7330274 591..848 100 -> Plus
arm_3R 7330996..7331075 849..928 100   Plus

BS07421.complete Sequence

1043 bp (1043 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635853

> BS07421.complete
GAAGTTATCAGTCGACATGAGATGGCGGCACGCAGTTCGCGCTACATTTA
CTTCGACCACGGCCACCGAATCTAGTCCGCTCATAGGAAAAGTTATAAGT
AATTCGAGAGCCCCACAAATTGCGCATGAAATGTTGGTGGAATACTTTAT
GGCGCTGCTCGTGATCATGGGATTAACCGCTCCAGTCGACAAGCAGAGCC
GGCGCAGCAGCCAATACTTCGGCCATCTGGCCGCCGCCGAGGAATTGTCC
AACTTGATACCAGATAATTACGATGCCATCGATCCCGTGTTTGACAACAC
AACAGATCGGGAGGTTATTGCAGCTTTGGGCACCACCGCCCGTCTCCACT
GCCGCGTTCGCCACCTGGGCGACAGGGCGGTGTCCTGGATACGACAACGG
GATCTCCACATCCTGACCATCGGCATCATGACCTACACGAACGATCAGCG
CTTTCTGGCGCGGCACATCGACAACTCCGACGAGTGGGTGCTCAAGATCG
TTTCGGTGCAGCAGAGAGATGCGGGCGTCTACGAGTGCCAGGTGTCCACG
GAGCCCAAGATCAGTCTGGCCTACAAGCTGGTCGTCGTGACCTCCAAGGC
TCAGATCCTGGCCAACCGCGAGCTGTTCATCCAGAGTGGCAGCGACATCA
ATCTGACGTGCATCGCACCCCAGGCTCCAGGACCCTACACGCACATGCTG
TGGCACAAGGACACGGAGCTGGTAAGCGACTCGGCGCGGGGTGGCATCCG
CGTAGAGTCCGAGCAGCAGATGAAGACCAGCAACCTGGTGATATCGCGAG
TCCAGCACACGGACTCGGGCAACTACACCTGCTCCGCGGACAACTCGAAT
TCTGACAGCGTCTTTGTGCATATCATTAAAAGTGAGCAGCACGCGGCCAT
GCAGCACGAGCTGGGCTCGAGGCTGCTCCTGCCCCCTCTGCCCCTGTTGC
TCCTGGCGGTCCTGCTGGTCGTCCTGCTGGGCCCCACCTCCAGCCTCCAG
ATTCGCACCCCGCTCTCAACCCGCTAAAAGCTTTCTAGACCAT

BS07421.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:15:25
Subject Length Description Subject Range Query Range Score Percent Strand
dpr5-RA 1011 CG5308-PA 1..1011 17..1027 5055 100 Plus
dpr5-RB 897 CG5308-PB 1..897 131..1027 4485 100 Plus
dpr4-RB 972 CG33512-PB 196..510 347..661 330 73.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:15:26
Subject Length Description Subject Range Query Range Score Percent Strand
dpr5-RA 1817 CG5308-RA 369..1380 16..1027 5060 100 Plus
dpr5-RB 1419 CG5308-RB 46..982 91..1027 4685 100 Plus
dpr4-RB 2994 CG33512-RB 1201..1515 347..661 330 73.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:15:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11503411..11503780 221..590 1850 100 Plus
3R 32079331 3R 11504295..11504552 591..848 1290 100 Plus
3R 32079331 3R 11505274..11505452 849..1027 895 100 Plus
3R 32079331 3R 11501115..11501246 91..222 660 100 Plus
3R 32079331 3R 11500352..11500428 16..92 385 100 Plus
3R 32079331 3R 11535995..11536180 564..379 255 75.8 Minus
Blast to na_te.dros performed on 2014-11-28 00:15:24 has no hits.

BS07421.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:03 Download gff for BS07421.complete
Subject Subject Range Query Range Percent Splice Strand
dpr5-RA 1..1011 17..1027 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:09 Download gff for BS07421.complete
Subject Subject Range Query Range Percent Splice Strand
dpr5-RA 367..1382 13..1031 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:55 Download gff for BS07421.complete
Subject Subject Range Query Range Percent Splice Strand
dpr5-RA 370..1378 17..1025 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:03 Download gff for BS07421.complete
Subject Subject Range Query Range Percent Splice Strand
dpr5-RA 367..1382 13..1031 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:42 Download gff for BS07421.complete
Subject Subject Range Query Range Percent Splice Strand
dpr5-RA 370..1378 17..1025 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:42 Download gff for BS07421.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11504295..11504552 591..848 100 -> Plus
3R 11505274..11505450 849..1025 100   Plus
3R 11503412..11503780 222..590 100 -> Plus
3R 11500353..11500428 17..92 100 -> Plus
3R 11501117..11501245 93..221 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:55 Download gff for BS07421.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7326075..7326150 17..92 100 -> Plus
arm_3R 7326839..7326967 93..221 100 -> Plus
arm_3R 7329134..7329502 222..590 100 -> Plus
arm_3R 7330017..7330274 591..848 100 -> Plus
arm_3R 7330996..7331172 849..1025 100   Plus

BS07421.pep Sequence

Translation from 16 to 1026

> BS07421.pep
MRWRHAVRATFTSTTATESSPLIGKVISNSRAPQIAHEMLVEYFMALLVI
MGLTAPVDKQSRRSSQYFGHLAAAEELSNLIPDNYDAIDPVFDNTTDREV
IAALGTTARLHCRVRHLGDRAVSWIRQRDLHILTIGIMTYTNDQRFLARH
IDNSDEWVLKIVSVQQRDAGVYECQVSTEPKISLAYKLVVVTSKAQILAN
RELFIQSGSDINLTCIAPQAPGPYTHMLWHKDTELVSDSARGGIRVESEQ
QMKTSNLVISRVQHTDSGNYTCSADNSNSDSVFVHIIKSEQHAAMQHELG
SRLLLPPLPLLLLAVLLVVLLGPTSSLQIRTPLSTR*

BS07421.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:16
Subject Length Description Subject Range Query Range Score Percent Strand
dpr5-PA 336 CG5308-PA 1..336 1..336 1708 100 Plus
dpr5-PB 298 CG5308-PB 1..298 39..336 1515 100 Plus
dpr4-PB 323 CG33512-PB 45..279 90..324 670 56.2 Plus
dpr8-PB 344 CG32600-PB 42..297 90..336 485 41.8 Plus
dpr8-PA 344 CG32600-PA 42..297 90..336 485 41.8 Plus