Clone BS07422 Report

Search the DGRC for BS07422

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCG14521-RA
Protein status:BS07422.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07422.3prime Sequence

956 bp (834 high quality bases) assembled on 2006-01-06

> BS07422.3prime
ATGGTCTAGAAAGCTTTCACGCTCCCCCGGTTCTCAGACTCAGCCTCATC
CACAGAAGCATCAGCATGGCGAGCAGGGGCTGCCACGTCGTCCGGTTGCT
CCTGCCCGCATTCCGAGCAGCCTCCTCGAGACCTCCGATGTAATTCAGAT
GATCATCGTTGCTGGCGGAGGCGCCCGGATGAAGCTTGATTTCGTATAAC
CGCAATGTGCCCTCGGCACGGCCCAGCGAGTTTGTGCTGACGCAGTGATA
GGTGCCCACATCGGAGGGCGAGAAGGAACGCACCACCAGCAGCATGACGC
CCCGATAGCCATCGCGGCGCTCCGTTATCCCGTACTTGGGCCCGTCGAGC
AGCATTTCGGGACCCGGCGAGCCGGACTCCAGGCTGGCCGTGGAGACGCT
GGCGAATCCGTTGGACGTCCGCGCCCCCTTCAGCCAGTAGGAGACGGGCG
ACGGCGAGGCCTCCACCTGGCATTCCAGCTGCACATCGGATCCCAAGGGC
GTGCCCAGGAGCTGGCTGGGGGCCCTCACCATGGGAGCAAATTGCACACT
CAGCGAGACTCGTTTGCTGACGGCAGGTGGAACATCGTTGGATGCTATAC
ACAAGTAGGCGCCCATCTGACGCCTCTCCAGGCGGAGCAGCCTGAGCGAG
GATCCATTATAGGACTCCACTTTCATGAGCTCCCTACTGCCTGGCTTGCG
AATGAGTATCATTTCGCCGTCCTCCCTGCGCCAAGTGACCCTTGGCTGGG
GATTTCCCGTGGCTTTGCAGGTGAGCGTGGCATCCTCGCCCTCCTGGACG
GCCAGATCGGCGGATGACTCTTCGTTGATGATATCCGGTGGTACCTGCAC
ATCGATACAACCCACTTGGTTCTTCATGGGACTCGTATTTATTTGGCACA
TATAGCAGCCGCGGTCACTTTCCCGCAGTTTGCTGAATTTTTAGTTCCAT
GTGTGC

BS07422.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG14521-PA 1242 CG14521-RA 323..1242 936..17 4575 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG14521-RA 3105 CG14521-RA 1683..2622 956..17 4640 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28926166..28926365 341..540 1000 100 Plus
3R 32079331 3R 28926898..28927072 670..844 875 100 Plus
3R 32079331 3R 28925913..28926062 193..342 750 100 Plus
3R 32079331 3R 28926717..28926847 541..671 655 100 Plus
3R 32079331 3R 28925487..28925604 17..134 590 100 Plus
3R 32079331 3R 28927135..28927232 844..941 460 98 Plus
3R 32079331 3R 28925740..28925802 131..193 315 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:07:41 has no hits.

BS07422.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:18 Download gff for BS07422.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14521-PA 303..1242 17..956 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:15 Download gff for BS07422.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14521-PA 303..1242 17..956 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:52:22 Download gff for BS07422.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14521-RA 1683..2622 17..956 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:40:35 Download gff for BS07422.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14521-RA 1683..2622 17..956 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:40:35 Download gff for BS07422.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 28925742..28925801 133..192 100 <- Plus
3R 28925913..28926061 193..341 100 <- Plus
3R 28926167..28926365 342..540 100 <- Plus
3R 28926717..28926845 541..669 100 <- Plus
3R 28926898..28927071 670..843 100 <- Plus
3R 28927135..28927241 844..950 97   Plus
3R 28925487..28925602 17..132 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:52:22 Download gff for BS07422.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24751209..24751324 17..132 100 <- Plus
arm_3R 24751464..24751523 133..192 100 <- Plus
arm_3R 24751635..24751783 193..341 100 <- Plus
arm_3R 24751889..24752087 342..540 100 <- Plus
arm_3R 24752439..24752567 541..669 100 <- Plus
arm_3R 24752620..24752793 670..843 100 <- Plus
arm_3R 24752857..24752963 844..950 97   Plus

BS07422.5prime Sequence

897 bp (853 high quality bases) assembled on 2006-01-06

> BS07422.5prime
GAAGTTATCAGTCGACATGGAGAAGCTGCTGCAATCGACGCTGTTTGTCA
TCCTGATAATGGCCACAAAATGCGGCAGTGGCTCGACCCAGAACCAGCAT
CACGAGAGCAGTTCCCAGCTGGATCCCGATCCGGAGTTCATAGGGTTCAT
CAACAACGTCACATATCCGGCAGGACGCGAGGCCATCCTGGCCTGCTCGG
TGCGCAATCTCGGCAAGAATAAGGTTGGTTGGCTGAGAGCCTCCGATCAG
ACCGTTTTAGCTCTCCAAGGTCGCGTTGTCACCCATAATGCGAGAATCAG
CGTCATGCATCAGGATATGCACACATGGAAACTAAAAATCAGCAAACTGC
GGGAAAGTGACCGCGGCTGCTATATGTGCCAAATAAATACGAGTCCCATG
AAGAAACAAGTGGGTTGTATCGATGTGCAGGTACCACCGGATATCATCAA
CGAAGAGTCATCCGCCGATCTGGCCGTCCAGGAGGGCGAGGATGCCACGC
TCACCTGCAAAGCCACGGGAAATCCCCAGCCAAGGGTCACTTGGCGCAGG
GAGGACGGCGAAATGATACTCATTCGCAAGCCAGGCAGTAGGGAGCTCAT
GAAAGTGGAGTCCTATAATGGATCCTCGCTCAGGCTGCTCCGCCTGGAGA
GGCGTCAGATGGGCGCCTACTTGTGTATAGCATCCAACGATGTTCCACCT
GCCGTCAGCAAACGAGTCTCGCTGAGTGTGCAATTTGCTCCCATGGTGAG
GGCCCCCAGCCAGCTCCTGGGCACGCCCTTGGGATCCGATGTGCAGCTGG
AATGCCAGGTGGAGGCCTCGCCGTCGCCCGTCTCCTACTGGCTGAAGGGG
GCGCGGACGTCCAACGGATTCGCCAGCGTCTCCACGGCCAGCCTGGA

BS07422.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG14521-PA 1242 CG14521-RA 1..881 17..897 4405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:11:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14521-RA 3105 CG14521-RA 1381..2261 17..897 4405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28926898..28927072 605..431 875 100 Minus
3R 32079331 3R 28926203..28926365 897..735 815 100 Minus
3R 32079331 3R 28926717..28926847 734..604 655 100 Minus
3R 32079331 3R 28927475..28927596 225..104 610 100 Minus
3R 32079331 3R 28927135..28927241 431..325 535 100 Minus
3R 32079331 3R 28927310..28927412 324..222 515 100 Minus
3R 32079331 3R 28927684..28927771 104..17 440 100 Minus
Blast to na_te.dros performed on 2015-02-13 08:11:48 has no hits.

BS07422.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:20 Download gff for BS07422.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14521-PA 1..880 17..896 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:17 Download gff for BS07422.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14521-PA 1..880 17..896 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:56:25 Download gff for BS07422.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14521-RA 1374..2260 9..896 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:12:21 Download gff for BS07422.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14521-RA 1374..2260 9..896 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:12:21 Download gff for BS07422.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 28927477..28927595 105..223 100 <- Minus
3R 28927684..28927778 9..104 95   Minus
3R 28926204..28926365 735..896 100 <- Minus
3R 28926717..28926845 606..734 100 <- Minus
3R 28926898..28927071 432..605 100 <- Minus
3R 28927135..28927241 325..431 100 <- Minus
3R 28927310..28927410 224..324 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:56:25 Download gff for BS07422.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24751926..24752087 735..896 100 <- Minus
arm_3R 24752439..24752567 606..734 100 <- Minus
arm_3R 24752620..24752793 432..605 100 <- Minus
arm_3R 24752857..24752963 325..431 100 <- Minus
arm_3R 24753032..24753132 224..324 100 <- Minus
arm_3R 24753199..24753317 105..223 100 <- Minus
arm_3R 24753406..24753500 9..104 95   Minus

BS07422.complete Sequence

1274 bp (1274 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635854

> BS07422.complete
GAAGTTATCAGTCGACATGGAGAAGCTGCTGCAATCGACGCTGTTTGTCA
TCCTGATAATGGCCACAAAATGCGGCAGTGGCTCGACCCAGAACCAGCAT
CACGAGAGCAGTTCCCAGCTGGATCCCGATCCGGAGTTCATAGGGTTCAT
CAACAACGTCACATATCCGGCAGGACGCGAGGCCATCCTGGCCTGCTCGG
TGCGCAATCTCGGCAAGAATAAGGTTGGTTGGCTGAGAGCCTCCGATCAG
ACCGTTTTAGCTCTCCAAGGTCGCGTTGTCACCCATAATGCGAGAATCAG
CGTCATGCATCAGGATATGCACACATGGAAACTAAAAATCAGCAAACTGC
GGGAAAGTGACCGCGGCTGCTATATGTGCCAAATAAATACGAGTCCCATG
AAGAAACAAGTGGGTTGTATCGATGTGCAGGTACCACCGGATATCATCAA
CGAAGAGTCATCCGCCGATCTGGCCGTCCAGGAGGGCGAGGATGCCACGC
TCACCTGCAAAGCCACGGGAAATCCCCAGCCAAGGGTCACTTGGCGCAGG
GAGGACGGCGAAATGATACTCATTCGCAAGCCAGGCAGTAGGGAGCTCAT
GAAAGTGGAGTCCTATAATGGATCCTCGCTCAGGCTGCTCCGCCTGGAGA
GGCGTCAGATGGGCGCCTACTTGTGTATAGCATCCAACGATGTTCCACCT
GCCGTCAGCAAACGAGTCTCGCTGAGTGTGCAATTTGCTCCCATGGTGAG
GGCCCCCAGCCAGCTCCTGGGCACGCCCTTGGGATCCGATGTGCAGCTGG
AATGCCAGGTGGAGGCCTCGCCGTCGCCCGTCTCCTACTGGCTGAAGGGG
GCGCGGACGTCCAACGGATTCGCCAGCGTCTCCACGGCCAGCCTGGAGTC
CGGCTCGCCGGGTCCCGAAATGCTGCTCGACGGGCCCAAGTACGGGATAA
CGGAGCGCCGCGATGGCTATCGGGGCGTCATGCTGCTGGTGGTGCGTTCC
TTCTCGCCCTCCGATGTGGGCACCTATCACTGCGTCAGCACAAACTCGCT
GGGCCGTGCCGAGGGCACATTGCGGTTATACGAAATCAAGCTTCATCCGG
GCGCCTCCGCCAGCAACGATGATCATCTGAATTACATCGGAGGTCTCGAG
GAGGCTGCTCGGAATGCGGGCAGGAGCAACCGGACGACGTGGCAGCCCCT
GCTCGCCATGCTGATGCTTCTGTGGATGAGGCTGAGTCTGAGAACCGGGG
GAGCGTGAAAGCTTTCTAGACCAT

BS07422.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:57:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG14521-RA 1242 CG14521-PA 1..1242 17..1258 6210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG14521-RA 3105 CG14521-RA 1381..2622 17..1258 6210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28926166..28926365 934..735 1000 100 Minus
3R 32079331 3R 28926898..28927072 605..431 875 100 Minus
3R 32079331 3R 28925913..28926062 1082..933 750 100 Minus
3R 32079331 3R 28926717..28926847 734..604 655 100 Minus
3R 32079331 3R 28927475..28927596 225..104 610 100 Minus
3R 32079331 3R 28925487..28925604 1258..1141 590 100 Minus
3R 32079331 3R 28927135..28927241 431..325 535 100 Minus
3R 32079331 3R 28927310..28927412 324..222 515 100 Minus
3R 32079331 3R 28927684..28927771 104..17 440 100 Minus
3R 32079331 3R 28925740..28925802 1144..1082 315 100 Minus
Blast to na_te.dros performed on 2014-11-27 06:57:58 has no hits.

BS07422.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:05 Download gff for BS07422.complete
Subject Subject Range Query Range Percent Splice Strand
CG14521-RA 1..1242 17..1258 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:13 Download gff for BS07422.complete
Subject Subject Range Query Range Percent Splice Strand
CG14521-RA 1356..2604 9..1258 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:36 Download gff for BS07422.complete
Subject Subject Range Query Range Percent Splice Strand
CG14521-RA 1381..2621 17..1257 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:05 Download gff for BS07422.complete
Subject Subject Range Query Range Percent Splice Strand
CG14521-RA 1356..2604 9..1258 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:17 Download gff for BS07422.complete
Subject Subject Range Query Range Percent Splice Strand
CG14521-RA 1381..2621 17..1257 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:17 Download gff for BS07422.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28925488..28925602 1143..1257 100 <- Minus
3R 28925742..28925801 1083..1142 100 <- Minus
3R 28925913..28926061 934..1082 100 <- Minus
3R 28926167..28926365 735..933 100 <- Minus
3R 28926717..28926845 606..734 100 <- Minus
3R 28926898..28927071 432..605 100 <- Minus
3R 28927135..28927241 325..431 100 <- Minus
3R 28927310..28927410 224..324 100 <- Minus
3R 28927477..28927595 105..223 100 <- Minus
3R 28927684..28927771 17..104 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:36 Download gff for BS07422.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24753032..24753132 224..324 100 <- Minus
arm_3R 24753199..24753317 105..223 100 <- Minus
arm_3R 24753406..24753493 17..104 100   Minus
arm_3R 24751210..24751324 1143..1257 100 <- Minus
arm_3R 24751464..24751523 1083..1142 100 <- Minus
arm_3R 24751635..24751783 934..1082 100 <- Minus
arm_3R 24751889..24752087 735..933 100 <- Minus
arm_3R 24752439..24752567 606..734 100 <- Minus
arm_3R 24752620..24752793 432..605 100 <- Minus
arm_3R 24752857..24752963 325..431 100 <- Minus

BS07422.pep Sequence

Translation from 16 to 1257

> BS07422.pep
MEKLLQSTLFVILIMATKCGSGSTQNQHHESSSQLDPDPEFIGFINNVTY
PAGREAILACSVRNLGKNKVGWLRASDQTVLALQGRVVTHNARISVMHQD
MHTWKLKISKLRESDRGCYMCQINTSPMKKQVGCIDVQVPPDIINEESSA
DLAVQEGEDATLTCKATGNPQPRVTWRREDGEMILIRKPGSRELMKVESY
NGSSLRLLRLERRQMGAYLCIASNDVPPAVSKRVSLSVQFAPMVRAPSQL
LGTPLGSDVQLECQVEASPSPVSYWLKGARTSNGFASVSTASLESGSPGP
EMLLDGPKYGITERRDGYRGVMLLVVRSFSPSDVGTYHCVSTNSLGRAEG
TLRLYEIKLHPGASASNDDHLNYIGGLEEAARNAGRSNRTTWQPLLAMLM
LLWMRLSLRTGGA*

BS07422.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG14521-PA 413 CG14521-PA 1..413 1..413 2139 100 Plus
CG32791-PC 554 CG32791-PC 42..340 39..357 783 46.4 Plus
CG32791-PA 554 CG32791-PA 42..340 39..357 783 46.4 Plus
CG42343-PG 534 CG42343-PG 87..402 38..374 766 44.4 Plus
CG42343-PF 555 CG42343-PF 97..423 38..374 747 43.3 Plus