Clone Sequence Records
BS07422.3prime Sequence
956 bp (834 high quality bases) assembled on 2006-01-06
> BS07422.3prime
ATGGTCTAGAAAGCTTTCACGCTCCCCCGGTTCTCAGACTCAGCCTCATC
CACAGAAGCATCAGCATGGCGAGCAGGGGCTGCCACGTCGTCCGGTTGCT
CCTGCCCGCATTCCGAGCAGCCTCCTCGAGACCTCCGATGTAATTCAGAT
GATCATCGTTGCTGGCGGAGGCGCCCGGATGAAGCTTGATTTCGTATAAC
CGCAATGTGCCCTCGGCACGGCCCAGCGAGTTTGTGCTGACGCAGTGATA
GGTGCCCACATCGGAGGGCGAGAAGGAACGCACCACCAGCAGCATGACGC
CCCGATAGCCATCGCGGCGCTCCGTTATCCCGTACTTGGGCCCGTCGAGC
AGCATTTCGGGACCCGGCGAGCCGGACTCCAGGCTGGCCGTGGAGACGCT
GGCGAATCCGTTGGACGTCCGCGCCCCCTTCAGCCAGTAGGAGACGGGCG
ACGGCGAGGCCTCCACCTGGCATTCCAGCTGCACATCGGATCCCAAGGGC
GTGCCCAGGAGCTGGCTGGGGGCCCTCACCATGGGAGCAAATTGCACACT
CAGCGAGACTCGTTTGCTGACGGCAGGTGGAACATCGTTGGATGCTATAC
ACAAGTAGGCGCCCATCTGACGCCTCTCCAGGCGGAGCAGCCTGAGCGAG
GATCCATTATAGGACTCCACTTTCATGAGCTCCCTACTGCCTGGCTTGCG
AATGAGTATCATTTCGCCGTCCTCCCTGCGCCAAGTGACCCTTGGCTGGG
GATTTCCCGTGGCTTTGCAGGTGAGCGTGGCATCCTCGCCCTCCTGGACG
GCCAGATCGGCGGATGACTCTTCGTTGATGATATCCGGTGGTACCTGCAC
ATCGATACAACCCACTTGGTTCTTCATGGGACTCGTATTTATTTGGCACA
TATAGCAGCCGCGGTCACTTTCCCGCAGTTTGCTGAATTTTTAGTTCCAT
GTGTGC
BS07422.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14521-PA | 1242 | CG14521-RA | 323..1242 | 936..17 | 4575 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:07:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14521-RA | 3105 | CG14521-RA | 1683..2622 | 956..17 | 4640 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:07:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28926166..28926365 | 341..540 | 1000 | 100 | Plus |
3R | 32079331 | 3R | 28926898..28927072 | 670..844 | 875 | 100 | Plus |
3R | 32079331 | 3R | 28925913..28926062 | 193..342 | 750 | 100 | Plus |
3R | 32079331 | 3R | 28926717..28926847 | 541..671 | 655 | 100 | Plus |
3R | 32079331 | 3R | 28925487..28925604 | 17..134 | 590 | 100 | Plus |
3R | 32079331 | 3R | 28927135..28927232 | 844..941 | 460 | 98 | Plus |
3R | 32079331 | 3R | 28925740..28925802 | 131..193 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:07:41 has no hits.
BS07422.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:18 Download gff for
BS07422.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14521-PA | 303..1242 | 17..956 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:15 Download gff for
BS07422.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14521-PA | 303..1242 | 17..956 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:52:22 Download gff for
BS07422.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14521-RA | 1683..2622 | 17..956 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:40:35 Download gff for
BS07422.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14521-RA | 1683..2622 | 17..956 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:40:35 Download gff for
BS07422.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28925742..28925801 | 133..192 | 100 | <- | Plus |
3R | 28925913..28926061 | 193..341 | 100 | <- | Plus |
3R | 28926167..28926365 | 342..540 | 100 | <- | Plus |
3R | 28926717..28926845 | 541..669 | 100 | <- | Plus |
3R | 28926898..28927071 | 670..843 | 100 | <- | Plus |
3R | 28927135..28927241 | 844..950 | 97 | | Plus |
3R | 28925487..28925602 | 17..132 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:52:22 Download gff for
BS07422.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24751209..24751324 | 17..132 | 100 | <- | Plus |
arm_3R | 24751464..24751523 | 133..192 | 100 | <- | Plus |
arm_3R | 24751635..24751783 | 193..341 | 100 | <- | Plus |
arm_3R | 24751889..24752087 | 342..540 | 100 | <- | Plus |
arm_3R | 24752439..24752567 | 541..669 | 100 | <- | Plus |
arm_3R | 24752620..24752793 | 670..843 | 100 | <- | Plus |
arm_3R | 24752857..24752963 | 844..950 | 97 | | Plus |
BS07422.5prime Sequence
897 bp (853 high quality bases) assembled on 2006-01-06
> BS07422.5prime
GAAGTTATCAGTCGACATGGAGAAGCTGCTGCAATCGACGCTGTTTGTCA
TCCTGATAATGGCCACAAAATGCGGCAGTGGCTCGACCCAGAACCAGCAT
CACGAGAGCAGTTCCCAGCTGGATCCCGATCCGGAGTTCATAGGGTTCAT
CAACAACGTCACATATCCGGCAGGACGCGAGGCCATCCTGGCCTGCTCGG
TGCGCAATCTCGGCAAGAATAAGGTTGGTTGGCTGAGAGCCTCCGATCAG
ACCGTTTTAGCTCTCCAAGGTCGCGTTGTCACCCATAATGCGAGAATCAG
CGTCATGCATCAGGATATGCACACATGGAAACTAAAAATCAGCAAACTGC
GGGAAAGTGACCGCGGCTGCTATATGTGCCAAATAAATACGAGTCCCATG
AAGAAACAAGTGGGTTGTATCGATGTGCAGGTACCACCGGATATCATCAA
CGAAGAGTCATCCGCCGATCTGGCCGTCCAGGAGGGCGAGGATGCCACGC
TCACCTGCAAAGCCACGGGAAATCCCCAGCCAAGGGTCACTTGGCGCAGG
GAGGACGGCGAAATGATACTCATTCGCAAGCCAGGCAGTAGGGAGCTCAT
GAAAGTGGAGTCCTATAATGGATCCTCGCTCAGGCTGCTCCGCCTGGAGA
GGCGTCAGATGGGCGCCTACTTGTGTATAGCATCCAACGATGTTCCACCT
GCCGTCAGCAAACGAGTCTCGCTGAGTGTGCAATTTGCTCCCATGGTGAG
GGCCCCCAGCCAGCTCCTGGGCACGCCCTTGGGATCCGATGTGCAGCTGG
AATGCCAGGTGGAGGCCTCGCCGTCGCCCGTCTCCTACTGGCTGAAGGGG
GCGCGGACGTCCAACGGATTCGCCAGCGTCTCCACGGCCAGCCTGGA
BS07422.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14521-PA | 1242 | CG14521-RA | 1..881 | 17..897 | 4405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:11:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14521-RA | 3105 | CG14521-RA | 1381..2261 | 17..897 | 4405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:11:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28926898..28927072 | 605..431 | 875 | 100 | Minus |
3R | 32079331 | 3R | 28926203..28926365 | 897..735 | 815 | 100 | Minus |
3R | 32079331 | 3R | 28926717..28926847 | 734..604 | 655 | 100 | Minus |
3R | 32079331 | 3R | 28927475..28927596 | 225..104 | 610 | 100 | Minus |
3R | 32079331 | 3R | 28927135..28927241 | 431..325 | 535 | 100 | Minus |
3R | 32079331 | 3R | 28927310..28927412 | 324..222 | 515 | 100 | Minus |
3R | 32079331 | 3R | 28927684..28927771 | 104..17 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:11:48 has no hits.
BS07422.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:20 Download gff for
BS07422.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14521-PA | 1..880 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:17 Download gff for
BS07422.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14521-PA | 1..880 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:56:25 Download gff for
BS07422.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14521-RA | 1374..2260 | 9..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:12:21 Download gff for
BS07422.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14521-RA | 1374..2260 | 9..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:12:21 Download gff for
BS07422.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28927477..28927595 | 105..223 | 100 | <- | Minus |
3R | 28927684..28927778 | 9..104 | 95 | | Minus |
3R | 28926204..28926365 | 735..896 | 100 | <- | Minus |
3R | 28926717..28926845 | 606..734 | 100 | <- | Minus |
3R | 28926898..28927071 | 432..605 | 100 | <- | Minus |
3R | 28927135..28927241 | 325..431 | 100 | <- | Minus |
3R | 28927310..28927410 | 224..324 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:56:25 Download gff for
BS07422.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24751926..24752087 | 735..896 | 100 | <- | Minus |
arm_3R | 24752439..24752567 | 606..734 | 100 | <- | Minus |
arm_3R | 24752620..24752793 | 432..605 | 100 | <- | Minus |
arm_3R | 24752857..24752963 | 325..431 | 100 | <- | Minus |
arm_3R | 24753032..24753132 | 224..324 | 100 | <- | Minus |
arm_3R | 24753199..24753317 | 105..223 | 100 | <- | Minus |
arm_3R | 24753406..24753500 | 9..104 | 95 | | Minus |
BS07422.complete Sequence
1274 bp (1274 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635854
> BS07422.complete
GAAGTTATCAGTCGACATGGAGAAGCTGCTGCAATCGACGCTGTTTGTCA
TCCTGATAATGGCCACAAAATGCGGCAGTGGCTCGACCCAGAACCAGCAT
CACGAGAGCAGTTCCCAGCTGGATCCCGATCCGGAGTTCATAGGGTTCAT
CAACAACGTCACATATCCGGCAGGACGCGAGGCCATCCTGGCCTGCTCGG
TGCGCAATCTCGGCAAGAATAAGGTTGGTTGGCTGAGAGCCTCCGATCAG
ACCGTTTTAGCTCTCCAAGGTCGCGTTGTCACCCATAATGCGAGAATCAG
CGTCATGCATCAGGATATGCACACATGGAAACTAAAAATCAGCAAACTGC
GGGAAAGTGACCGCGGCTGCTATATGTGCCAAATAAATACGAGTCCCATG
AAGAAACAAGTGGGTTGTATCGATGTGCAGGTACCACCGGATATCATCAA
CGAAGAGTCATCCGCCGATCTGGCCGTCCAGGAGGGCGAGGATGCCACGC
TCACCTGCAAAGCCACGGGAAATCCCCAGCCAAGGGTCACTTGGCGCAGG
GAGGACGGCGAAATGATACTCATTCGCAAGCCAGGCAGTAGGGAGCTCAT
GAAAGTGGAGTCCTATAATGGATCCTCGCTCAGGCTGCTCCGCCTGGAGA
GGCGTCAGATGGGCGCCTACTTGTGTATAGCATCCAACGATGTTCCACCT
GCCGTCAGCAAACGAGTCTCGCTGAGTGTGCAATTTGCTCCCATGGTGAG
GGCCCCCAGCCAGCTCCTGGGCACGCCCTTGGGATCCGATGTGCAGCTGG
AATGCCAGGTGGAGGCCTCGCCGTCGCCCGTCTCCTACTGGCTGAAGGGG
GCGCGGACGTCCAACGGATTCGCCAGCGTCTCCACGGCCAGCCTGGAGTC
CGGCTCGCCGGGTCCCGAAATGCTGCTCGACGGGCCCAAGTACGGGATAA
CGGAGCGCCGCGATGGCTATCGGGGCGTCATGCTGCTGGTGGTGCGTTCC
TTCTCGCCCTCCGATGTGGGCACCTATCACTGCGTCAGCACAAACTCGCT
GGGCCGTGCCGAGGGCACATTGCGGTTATACGAAATCAAGCTTCATCCGG
GCGCCTCCGCCAGCAACGATGATCATCTGAATTACATCGGAGGTCTCGAG
GAGGCTGCTCGGAATGCGGGCAGGAGCAACCGGACGACGTGGCAGCCCCT
GCTCGCCATGCTGATGCTTCTGTGGATGAGGCTGAGTCTGAGAACCGGGG
GAGCGTGAAAGCTTTCTAGACCAT
BS07422.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:57:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14521-RA | 1242 | CG14521-PA | 1..1242 | 17..1258 | 6210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:58:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14521-RA | 3105 | CG14521-RA | 1381..2622 | 17..1258 | 6210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:57:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28926166..28926365 | 934..735 | 1000 | 100 | Minus |
3R | 32079331 | 3R | 28926898..28927072 | 605..431 | 875 | 100 | Minus |
3R | 32079331 | 3R | 28925913..28926062 | 1082..933 | 750 | 100 | Minus |
3R | 32079331 | 3R | 28926717..28926847 | 734..604 | 655 | 100 | Minus |
3R | 32079331 | 3R | 28927475..28927596 | 225..104 | 610 | 100 | Minus |
3R | 32079331 | 3R | 28925487..28925604 | 1258..1141 | 590 | 100 | Minus |
3R | 32079331 | 3R | 28927135..28927241 | 431..325 | 535 | 100 | Minus |
3R | 32079331 | 3R | 28927310..28927412 | 324..222 | 515 | 100 | Minus |
3R | 32079331 | 3R | 28927684..28927771 | 104..17 | 440 | 100 | Minus |
3R | 32079331 | 3R | 28925740..28925802 | 1144..1082 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:57:58 has no hits.
BS07422.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:05 Download gff for
BS07422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14521-RA | 1..1242 | 17..1258 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:13 Download gff for
BS07422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14521-RA | 1356..2604 | 9..1258 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:36 Download gff for
BS07422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14521-RA | 1381..2621 | 17..1257 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:05 Download gff for
BS07422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14521-RA | 1356..2604 | 9..1258 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:17 Download gff for
BS07422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14521-RA | 1381..2621 | 17..1257 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:17 Download gff for
BS07422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28925488..28925602 | 1143..1257 | 100 | <- | Minus |
3R | 28925742..28925801 | 1083..1142 | 100 | <- | Minus |
3R | 28925913..28926061 | 934..1082 | 100 | <- | Minus |
3R | 28926167..28926365 | 735..933 | 100 | <- | Minus |
3R | 28926717..28926845 | 606..734 | 100 | <- | Minus |
3R | 28926898..28927071 | 432..605 | 100 | <- | Minus |
3R | 28927135..28927241 | 325..431 | 100 | <- | Minus |
3R | 28927310..28927410 | 224..324 | 100 | <- | Minus |
3R | 28927477..28927595 | 105..223 | 100 | <- | Minus |
3R | 28927684..28927771 | 17..104 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:36 Download gff for
BS07422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24753032..24753132 | 224..324 | 100 | <- | Minus |
arm_3R | 24753199..24753317 | 105..223 | 100 | <- | Minus |
arm_3R | 24753406..24753493 | 17..104 | 100 | | Minus |
arm_3R | 24751210..24751324 | 1143..1257 | 100 | <- | Minus |
arm_3R | 24751464..24751523 | 1083..1142 | 100 | <- | Minus |
arm_3R | 24751635..24751783 | 934..1082 | 100 | <- | Minus |
arm_3R | 24751889..24752087 | 735..933 | 100 | <- | Minus |
arm_3R | 24752439..24752567 | 606..734 | 100 | <- | Minus |
arm_3R | 24752620..24752793 | 432..605 | 100 | <- | Minus |
arm_3R | 24752857..24752963 | 325..431 | 100 | <- | Minus |
BS07422.pep Sequence
Translation from 16 to 1257
> BS07422.pep
MEKLLQSTLFVILIMATKCGSGSTQNQHHESSSQLDPDPEFIGFINNVTY
PAGREAILACSVRNLGKNKVGWLRASDQTVLALQGRVVTHNARISVMHQD
MHTWKLKISKLRESDRGCYMCQINTSPMKKQVGCIDVQVPPDIINEESSA
DLAVQEGEDATLTCKATGNPQPRVTWRREDGEMILIRKPGSRELMKVESY
NGSSLRLLRLERRQMGAYLCIASNDVPPAVSKRVSLSVQFAPMVRAPSQL
LGTPLGSDVQLECQVEASPSPVSYWLKGARTSNGFASVSTASLESGSPGP
EMLLDGPKYGITERRDGYRGVMLLVVRSFSPSDVGTYHCVSTNSLGRAEG
TLRLYEIKLHPGASASNDDHLNYIGGLEEAARNAGRSNRTTWQPLLAMLM
LLWMRLSLRTGGA*
BS07422.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14521-PA | 413 | CG14521-PA | 1..413 | 1..413 | 2139 | 100 | Plus |
CG32791-PC | 554 | CG32791-PC | 42..340 | 39..357 | 783 | 46.4 | Plus |
CG32791-PA | 554 | CG32791-PA | 42..340 | 39..357 | 783 | 46.4 | Plus |
CG42343-PG | 534 | CG42343-PG | 87..402 | 38..374 | 766 | 44.4 | Plus |
CG42343-PF | 555 | CG42343-PF | 97..423 | 38..374 | 747 | 43.3 | Plus |