Clone Sequence Records
BS07423.3prime Sequence
684 bp (683 high quality bases) assembled on 2006-01-06
> BS07423.3prime
ATGGTCTAGAAAGCTTTCATTCGTAAAAGTGCTTCTGCACCCATCGAGGC
AAGGCAAAGGCGGCGGAGTGAACCTCGGAGGAGTAGTACCTTAGGTCTAT
AGAATCGATTTCGGACTTTCCAAGCTTGGGAGTAGCGAAGTCCTGGTTTT
TGTTCAGGGAGCCCATGACGAAGCCAATGTGGCCGCAGGGATAGGACGGA
ACGGAGGTGACGGCATAGGCCACCTTAGCAAAGTGCTCCTTGCAGCCGGA
CATGGTCTTCTTGATGTAGTCCAGGTCCAGCCAGAAGCTACCGCCCTGGG
AGCACACGATTCCGTCATCCTTCAGCGCGTGTTTCATTAGCTCGTAGTAG
CTTTCCTGAAACAGGCTCACTGCCGGACCAATGGGATCCGAGCTGTCGGT
GATGATGACATCAAATTCGTTCTTGTGTTTCTTCATATAGTCGAATCCAT
CGCCAATGGTAAGCTTCAACTTCTCGTTGGCGAAACCACAGGCCATCGCT
GGGAGATATTGCTTGGACAGCTCGACGACACGGTCGTCGATTTCCACCTG
ATGCACTTCCTCGACCAGTGGATGCTTTACCACCTCGCGAGCAACGCCGC
CATCGCCACCGCCCACGATCAGGACCTTTTTGGGATTGGGATGGGCGCAG
AGCGGCAGGAAAGATATCATGTCGACTGATAACT
BS07423.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8327-PA | 864 | SpdS-RA | 211..864 | 670..17 | 3270 | 100 | Minus |
CG8327-PB | 654 | SpdS-RB | 1..654 | 670..17 | 3270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SpdS-RC | 995 | CG8327-RC | 261..914 | 670..17 | 3270 | 100 | Minus |
SpdS-RB | 1189 | CG8327-RB | 455..1108 | 670..17 | 3270 | 100 | Minus |
SpdS-RA | 1511 | CG8327-RA | 291..944 | 670..17 | 3270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9632453..9633106 | 670..17 | 3270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:21:39 has no hits.
BS07423.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:21 Download gff for
BS07423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-PB | 1..654 | 17..670 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:18 Download gff for
BS07423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8327-PB | 1..654 | 17..670 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:37:12 Download gff for
BS07423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RA | 282..951 | 11..681 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:45:19 Download gff for
BS07423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RA | 282..951 | 11..681 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:45:19 Download gff for
BS07423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9632444..9633113 | 11..681 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:37:12 Download gff for
BS07423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5458166..5458835 | 11..681 | 98 | | Minus |
BS07423.5prime Sequence
684 bp (683 high quality bases) assembled on 2006-01-06
> BS07423.5prime
GAAGTTATCAGTCGACATGATATCTTTCCTGCCGCTCTGCGCCCATCCCA
ATCCCAAAAAGGTCCTGATCGTGGGCGGTGGCGATGGCGGCGTTGCTCGC
GAGGTGGTAAAGCATCCACTGGTCGAGGAAGTGCATCAGGTGGAAATCGA
CGACCGTGTCGTCGAGCTGTCCAAGCAATATCTCCCAGCGATGGCCTGTG
GTTTCGCCAACGAGAAGTTGAAGCTTACCATTGGCGATGGATTCGACTAT
ATGAAGAAACACAAGAACGAATTTGATGTCATCATCACCGACAGCTCGGA
TCCCATTGGTCCGGCAGTGAGCCTGTTTCAGGAAAGCTACTACGAGCTAA
TGAAACACGCGCTGAAGGATGACGGAATCGTGTGCTCCCAGGGCGGTAGC
TTCTGGCTGGACCTGGACTACATCAAGAAGACCATGTCCGGCTGCAAGGA
GCACTTTGCTAAGGTGGCCTATGCCGTCACCTCCGTTCCGTCCTATCCCT
GCGGCCACATTGGCTTCGTCATGGGCTCCCTGAACAAAAACCAGGACTTC
GCTACTCCCAAGCTTGGAAAGTCCGAAATCGATTCTATAGACCTAAGGTA
CTACTCCTCCGAGGTTCACTCCGCCGCCTTTGCCTTGCCTCGATGGGTGC
AGAAGCACTTTTACGAATGAAAGCTTTCTAGACC
BS07423.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8327-PA | 864 | SpdS-RA | 211..864 | 17..670 | 3270 | 100 | Plus |
CG8327-PB | 654 | SpdS-RB | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:16:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SpdS-RC | 995 | CG8327-RC | 261..914 | 17..670 | 3270 | 100 | Plus |
SpdS-RB | 1189 | CG8327-RB | 455..1108 | 17..670 | 3270 | 100 | Plus |
SpdS-RA | 1511 | CG8327-RA | 291..944 | 17..670 | 3270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:16:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9632453..9633106 | 17..670 | 3270 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:16:12 has no hits.
BS07423.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:22 Download gff for
BS07423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-PB | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:20 Download gff for
BS07423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8327-PB | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:36:58 Download gff for
BS07423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RA | 282..951 | 6..676 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:36:17 Download gff for
BS07423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RA | 282..951 | 6..676 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:36:17 Download gff for
BS07423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9632444..9633113 | 6..676 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:36:58 Download gff for
BS07423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5458166..5458835 | 6..676 | 98 | | Plus |
BS07423.complete Sequence
686 bp (686 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635855
> BS07423.complete
GAAGTTATCAGTCGACATGATATCTTTCCTGCCGCTCTGCGCCCATCCCA
ATCCCAAAAAGGTCCTGATCGTGGGCGGTGGCGATGGCGGCGTTGCTCGC
GAGGTGGTAAAGCATCCACTGGTCGAGGAAGTGCATCAGGTGGAAATCGA
CGACCGTGTCGTCGAGCTGTCCAAGCAATATCTCCCAGCGATGGCCTGTG
GTTTCGCCAACGAGAAGTTGAAGCTTACCATTGGCGATGGATTCGACTAT
ATGAAGAAACACAAGAACGAATTTGATGTCATCATCACCGACAGCTCGGA
TCCCATTGGTCCGGCAGTGAGCCTGTTTCAGGAAAGCTACTACGAGCTAA
TGAAACACGCGCTGAAGGATGACGGAATCGTGTGCTCCCAGGGCGGTAGC
TTCTGGCTGGACCTGGACTACATCAAGAAGACCATGTCCGGCTGCAAGGA
GCACTTTGCTAAGGTGGCCTATGCCGTCACCTCCGTTCCGTCCTATCCCT
GCGGCCACATTGGCTTCGTCATGGGCTCCCTGAACAAAAACCAGGACTTC
GCTACTCCCAAGCTTGGAAAGTCCGAAATCGATTCTATAGACCTAAGGTA
CTACTCCTCCGAGGTTCACTCCGCCGCCTTTGCCTTGCCTCGATGGGTGC
AGAAGCACTTTTACGAATGAAAGCTTTCTAGACCAT
BS07423.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:22:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SpdS-RC | 864 | CG8327-PC | 211..864 | 17..670 | 3270 | 100 | Plus |
SpdS-RB | 654 | CG8327-PB | 1..654 | 17..670 | 3270 | 100 | Plus |
SpdS-RA | 864 | CG8327-PA | 211..864 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:22:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SpdS-RC | 995 | CG8327-RC | 261..914 | 17..670 | 3270 | 100 | Plus |
SpdS-RB | 1189 | CG8327-RB | 455..1108 | 17..670 | 3270 | 100 | Plus |
SpdS-RA | 1511 | CG8327-RA | 291..944 | 17..670 | 3270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:22:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9632453..9633106 | 17..670 | 3270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:22:11 has no hits.
BS07423.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:56 Download gff for
BS07423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RB | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:09 Download gff for
BS07423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RB | 458..1127 | 6..676 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:46 Download gff for
BS07423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RA | 291..943 | 17..669 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:56 Download gff for
BS07423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RB | 458..1127 | 6..676 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:56 Download gff for
BS07423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RA | 291..943 | 17..669 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:56 Download gff for
BS07423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9632453..9633105 | 17..669 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:46 Download gff for
BS07423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5458175..5458827 | 17..669 | 100 | | Plus |
BS07423.pep Sequence
Translation from 16 to 669
> BS07423.pep
MISFLPLCAHPNPKKVLIVGGGDGGVAREVVKHPLVEEVHQVEIDDRVVE
LSKQYLPAMACGFANEKLKLTIGDGFDYMKKHKNEFDVIITDSSDPIGPA
VSLFQESYYELMKHALKDDGIVCSQGGSFWLDLDYIKKTMSGCKEHFAKV
AYAVTSVPSYPCGHIGFVMGSLNKNQDFATPKLGKSEIDSIDLRYYSSEV
HSAAFALPRWVQKHFYE*
BS07423.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:51:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SpdS-PB | 217 | CG8327-PB | 1..217 | 1..217 | 1155 | 100 | Plus |
SpdS-PC | 287 | CG8327-PC | 71..287 | 1..217 | 1155 | 100 | Plus |
SpdS-PA | 287 | CG8327-PA | 71..287 | 1..217 | 1155 | 100 | Plus |