Clone BS07423 Report

Search the DGRC for BS07423

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptSpdS-RB
Protein status:BS07423.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07423.3prime Sequence

684 bp (683 high quality bases) assembled on 2006-01-06

> BS07423.3prime
ATGGTCTAGAAAGCTTTCATTCGTAAAAGTGCTTCTGCACCCATCGAGGC
AAGGCAAAGGCGGCGGAGTGAACCTCGGAGGAGTAGTACCTTAGGTCTAT
AGAATCGATTTCGGACTTTCCAAGCTTGGGAGTAGCGAAGTCCTGGTTTT
TGTTCAGGGAGCCCATGACGAAGCCAATGTGGCCGCAGGGATAGGACGGA
ACGGAGGTGACGGCATAGGCCACCTTAGCAAAGTGCTCCTTGCAGCCGGA
CATGGTCTTCTTGATGTAGTCCAGGTCCAGCCAGAAGCTACCGCCCTGGG
AGCACACGATTCCGTCATCCTTCAGCGCGTGTTTCATTAGCTCGTAGTAG
CTTTCCTGAAACAGGCTCACTGCCGGACCAATGGGATCCGAGCTGTCGGT
GATGATGACATCAAATTCGTTCTTGTGTTTCTTCATATAGTCGAATCCAT
CGCCAATGGTAAGCTTCAACTTCTCGTTGGCGAAACCACAGGCCATCGCT
GGGAGATATTGCTTGGACAGCTCGACGACACGGTCGTCGATTTCCACCTG
ATGCACTTCCTCGACCAGTGGATGCTTTACCACCTCGCGAGCAACGCCGC
CATCGCCACCGCCCACGATCAGGACCTTTTTGGGATTGGGATGGGCGCAG
AGCGGCAGGAAAGATATCATGTCGACTGATAACT

BS07423.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8327-PA 864 SpdS-RA 211..864 670..17 3270 100 Minus
CG8327-PB 654 SpdS-RB 1..654 670..17 3270 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:41
Subject Length Description Subject Range Query Range Score Percent Strand
SpdS-RC 995 CG8327-RC 261..914 670..17 3270 100 Minus
SpdS-RB 1189 CG8327-RB 455..1108 670..17 3270 100 Minus
SpdS-RA 1511 CG8327-RA 291..944 670..17 3270 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9632453..9633106 670..17 3270 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:21:39 has no hits.

BS07423.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:21 Download gff for BS07423.3prime
Subject Subject Range Query Range Percent Splice Strand
SpdS-PB 1..654 17..670 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:18 Download gff for BS07423.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8327-PB 1..654 17..670 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:37:12 Download gff for BS07423.3prime
Subject Subject Range Query Range Percent Splice Strand
SpdS-RA 282..951 11..681 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:45:19 Download gff for BS07423.3prime
Subject Subject Range Query Range Percent Splice Strand
SpdS-RA 282..951 11..681 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:45:19 Download gff for BS07423.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9632444..9633113 11..681 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:37:12 Download gff for BS07423.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5458166..5458835 11..681 98   Minus

BS07423.5prime Sequence

684 bp (683 high quality bases) assembled on 2006-01-06

> BS07423.5prime
GAAGTTATCAGTCGACATGATATCTTTCCTGCCGCTCTGCGCCCATCCCA
ATCCCAAAAAGGTCCTGATCGTGGGCGGTGGCGATGGCGGCGTTGCTCGC
GAGGTGGTAAAGCATCCACTGGTCGAGGAAGTGCATCAGGTGGAAATCGA
CGACCGTGTCGTCGAGCTGTCCAAGCAATATCTCCCAGCGATGGCCTGTG
GTTTCGCCAACGAGAAGTTGAAGCTTACCATTGGCGATGGATTCGACTAT
ATGAAGAAACACAAGAACGAATTTGATGTCATCATCACCGACAGCTCGGA
TCCCATTGGTCCGGCAGTGAGCCTGTTTCAGGAAAGCTACTACGAGCTAA
TGAAACACGCGCTGAAGGATGACGGAATCGTGTGCTCCCAGGGCGGTAGC
TTCTGGCTGGACCTGGACTACATCAAGAAGACCATGTCCGGCTGCAAGGA
GCACTTTGCTAAGGTGGCCTATGCCGTCACCTCCGTTCCGTCCTATCCCT
GCGGCCACATTGGCTTCGTCATGGGCTCCCTGAACAAAAACCAGGACTTC
GCTACTCCCAAGCTTGGAAAGTCCGAAATCGATTCTATAGACCTAAGGTA
CTACTCCTCCGAGGTTCACTCCGCCGCCTTTGCCTTGCCTCGATGGGTGC
AGAAGCACTTTTACGAATGAAAGCTTTCTAGACC

BS07423.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8327-PA 864 SpdS-RA 211..864 17..670 3270 100 Plus
CG8327-PB 654 SpdS-RB 1..654 17..670 3270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:16:13
Subject Length Description Subject Range Query Range Score Percent Strand
SpdS-RC 995 CG8327-RC 261..914 17..670 3270 100 Plus
SpdS-RB 1189 CG8327-RB 455..1108 17..670 3270 100 Plus
SpdS-RA 1511 CG8327-RA 291..944 17..670 3270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:16:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9632453..9633106 17..670 3270 100 Plus
Blast to na_te.dros performed on 2015-02-12 20:16:12 has no hits.

BS07423.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:22 Download gff for BS07423.5prime
Subject Subject Range Query Range Percent Splice Strand
SpdS-PB 1..654 17..670 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:20 Download gff for BS07423.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8327-PB 1..654 17..670 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:36:58 Download gff for BS07423.5prime
Subject Subject Range Query Range Percent Splice Strand
SpdS-RA 282..951 6..676 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:36:17 Download gff for BS07423.5prime
Subject Subject Range Query Range Percent Splice Strand
SpdS-RA 282..951 6..676 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:36:17 Download gff for BS07423.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9632444..9633113 6..676 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:36:58 Download gff for BS07423.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5458166..5458835 6..676 98   Plus

BS07423.complete Sequence

686 bp (686 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635855

> BS07423.complete
GAAGTTATCAGTCGACATGATATCTTTCCTGCCGCTCTGCGCCCATCCCA
ATCCCAAAAAGGTCCTGATCGTGGGCGGTGGCGATGGCGGCGTTGCTCGC
GAGGTGGTAAAGCATCCACTGGTCGAGGAAGTGCATCAGGTGGAAATCGA
CGACCGTGTCGTCGAGCTGTCCAAGCAATATCTCCCAGCGATGGCCTGTG
GTTTCGCCAACGAGAAGTTGAAGCTTACCATTGGCGATGGATTCGACTAT
ATGAAGAAACACAAGAACGAATTTGATGTCATCATCACCGACAGCTCGGA
TCCCATTGGTCCGGCAGTGAGCCTGTTTCAGGAAAGCTACTACGAGCTAA
TGAAACACGCGCTGAAGGATGACGGAATCGTGTGCTCCCAGGGCGGTAGC
TTCTGGCTGGACCTGGACTACATCAAGAAGACCATGTCCGGCTGCAAGGA
GCACTTTGCTAAGGTGGCCTATGCCGTCACCTCCGTTCCGTCCTATCCCT
GCGGCCACATTGGCTTCGTCATGGGCTCCCTGAACAAAAACCAGGACTTC
GCTACTCCCAAGCTTGGAAAGTCCGAAATCGATTCTATAGACCTAAGGTA
CTACTCCTCCGAGGTTCACTCCGCCGCCTTTGCCTTGCCTCGATGGGTGC
AGAAGCACTTTTACGAATGAAAGCTTTCTAGACCAT

BS07423.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
SpdS-RC 864 CG8327-PC 211..864 17..670 3270 100 Plus
SpdS-RB 654 CG8327-PB 1..654 17..670 3270 100 Plus
SpdS-RA 864 CG8327-PA 211..864 17..670 3270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
SpdS-RC 995 CG8327-RC 261..914 17..670 3270 100 Plus
SpdS-RB 1189 CG8327-RB 455..1108 17..670 3270 100 Plus
SpdS-RA 1511 CG8327-RA 291..944 17..670 3270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:22:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9632453..9633106 17..670 3270 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:22:11 has no hits.

BS07423.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:56 Download gff for BS07423.complete
Subject Subject Range Query Range Percent Splice Strand
SpdS-RB 1..654 17..670 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:09 Download gff for BS07423.complete
Subject Subject Range Query Range Percent Splice Strand
SpdS-RB 458..1127 6..676 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:46 Download gff for BS07423.complete
Subject Subject Range Query Range Percent Splice Strand
SpdS-RA 291..943 17..669 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:56 Download gff for BS07423.complete
Subject Subject Range Query Range Percent Splice Strand
SpdS-RB 458..1127 6..676 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:56 Download gff for BS07423.complete
Subject Subject Range Query Range Percent Splice Strand
SpdS-RA 291..943 17..669 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:56 Download gff for BS07423.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9632453..9633105 17..669 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:46 Download gff for BS07423.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5458175..5458827 17..669 100   Plus

BS07423.pep Sequence

Translation from 16 to 669

> BS07423.pep
MISFLPLCAHPNPKKVLIVGGGDGGVAREVVKHPLVEEVHQVEIDDRVVE
LSKQYLPAMACGFANEKLKLTIGDGFDYMKKHKNEFDVIITDSSDPIGPA
VSLFQESYYELMKHALKDDGIVCSQGGSFWLDLDYIKKTMSGCKEHFAKV
AYAVTSVPSYPCGHIGFVMGSLNKNQDFATPKLGKSEIDSIDLRYYSSEV
HSAAFALPRWVQKHFYE*

BS07423.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
SpdS-PB 217 CG8327-PB 1..217 1..217 1155 100 Plus
SpdS-PC 287 CG8327-PC 71..287 1..217 1155 100 Plus
SpdS-PA 287 CG8327-PA 71..287 1..217 1155 100 Plus