Clone BS07424 Report

Search the DGRC for BS07424

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG10830-RA
Protein status:BS07424.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07424.3prime Sequence

717 bp (716 high quality bases) assembled on 2006-01-06

> BS07424.3prime
ATGGTCTAGAAAGCTTCTAGTCCCGGATGAAGACGAACTCATTGTAGTGG
TTCCAGCGATTTTCCTCTGTGTCCACGCCCGGCTTGGGTTCCGCTGCCGA
GCCGGCAGTTCCGGATCCGCAGCTTCCGGCCATGCGGTATCCGTGGTCGT
GCAGATTGTCGAAAGCCTGCTCGATGTAGCAGTGCTTCAGGAAGAACCGC
GAGGTGTACCGATCCGTGCCACCATGATCCGGATCCCGGGACTCGTTCAG
CGTATCGCCGAACACCTCGCGGCACTGGGCCACTCGGCCGCAGACCAGGA
TGCGCGACAGCTTCCGGAACTTAACGTCGGCCAGTCCGTCTTTGCCGAAC
TGGAAGCTGCCACGGTAACCGATGGTGATGCATCCGGGTGGTCGAGCGTC
CCGCTCGCTGCGGATGCACTCGAGCATGGCGGTCAGCTTAAAGTGCTCCG
CCTCCCGCAGCAGCCGCTGTCGCTCGCGGAATCCTTCGGGAAGGTGCAGC
GCCTTGTCGCGCAGGAAGTCCAGGATGTAGCGGAAGAGGACGCCGTCACG
GTCCAGGAAGTAGCGACCCTTGCTGTCCTTGGCCAGCGAATCGCGACCCT
CGCCAAAGAGTTCCGCCAGCAGCGTGCTCTTATCCTGCAGCAGTGTGGCC
AGTGTGGTCGTGTAGCTCACGCCGCCGACGTTCAGCTCGATGATTTCGGG
CATGTCGACTGATAACT

BS07424.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG10830-PA 687 CG10830-RA 1..687 703..17 3435 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG10830-RA 2869 CG10830-RA 184..877 704..12 3445 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:28:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20896450..20897137 17..704 3440 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:29:00 has no hits.

BS07424.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:23 Download gff for BS07424.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10830-PA 1..687 17..703 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:21 Download gff for BS07424.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10830-PA 1..687 17..703 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:29:42 Download gff for BS07424.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10830-RA 177..883 5..711 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:06:34 Download gff for BS07424.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10830-RA 177..883 5..711 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:06:34 Download gff for BS07424.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20896438..20897140 5..711 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:29:42 Download gff for BS07424.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16722160..16722862 5..711 98   Plus

BS07424.5prime Sequence

717 bp (716 high quality bases) assembled on 2006-01-06

> BS07424.5prime
GAAGTTATCAGTCGACATGCCCGAAATCATCGAGCTGAACGTCGGCGGCG
TGAGCTACACGACCACACTGGCCACACTGCTGCAGGATAAGAGCACGCTG
CTGGCGGAACTCTTTGGCGAGGGTCGCGATTCGCTGGCCAAGGACAGCAA
GGGTCGCTACTTCCTGGACCGTGACGGCGTCCTCTTCCGCTACATCCTGG
ACTTCCTGCGCGACAAGGCGCTGCACCTTCCCGAAGGATTCCGCGAGCGA
CAGCGGCTGCTGCGGGAGGCGGAGCACTTTAAGCTGACCGCCATGCTCGA
GTGCATCCGCAGCGAGCGGGACGCTCGACCACCCGGATGCATCACCATCG
GTTACCGTGGCAGCTTCCAGTTCGGCAAAGACGGACTGGCCGACGTTAAG
TTCCGGAAGCTGTCGCGCATCCTGGTCTGCGGCCGAGTGGCCCAGTGCCG
CGAGGTGTTCGGCGATACGCTGAACGAGTCCCGGGATCCGGATCATGGTG
GCACGGATCGGTACACCTCGCGGTTCTTCCTGAAGCACTGCTACATCGAG
CAGGCTTTCGACAATCTGCACGACCACGGATACCGCATGGCCGGAAGCTG
CGGATCCGGAACTGCCGGCTCGGCAGCGGAACCCAAGCCGGGCGTGGACA
CAGAGGAAAATCGCTGGAACCACTACAATGAGTTCGTCTTCATCCGGGAC
TAGAAGCTTTCTAGACC

BS07424.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG10830-PA 687 CG10830-RA 1..687 17..703 3435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:15:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG10830-RA 2869 CG10830-RA 184..877 16..708 3445 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:15:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20896450..20897137 703..16 3440 100 Minus
Blast to na_te.dros performed on 2015-02-12 20:15:46 has no hits.

BS07424.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:24 Download gff for BS07424.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10830-PA 1..687 17..703 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:23 Download gff for BS07424.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10830-PA 1..687 17..703 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:36:54 Download gff for BS07424.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10830-RA 177..883 9..715 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:35:54 Download gff for BS07424.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10830-RA 177..883 9..715 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:35:54 Download gff for BS07424.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20896438..20897140 9..715 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:36:54 Download gff for BS07424.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16722160..16722862 9..715 98   Minus

BS07424.complete Sequence

719 bp (719 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635856

> BS07424.complete
GAAGTTATCAGTCGACATGCCCGAAATCATCGAGCTGAACGTCGGCGGCG
TGAGCTACACGACCACACTGGCCACACTGCTGCAGGATAAGAGCACGCTG
CTGGCGGAACTCTTTGGCGAGGGTCGCGATTCGCTGGCCAAGGACAGCAA
GGGTCGCTACTTCCTGGACCGTGACGGCGTCCTCTTCCGCTACATCCTGG
ACTTCCTGCGCGACAAGGCGCTGCACCTTCCCGAAGGATTCCGCGAGCGA
CAGCGGCTGCTGCGGGAGGCGGAGCACTTTAAGCTGACCGCCATGCTCGA
GTGCATCCGCAGCGAGCGGGACGCTCGACCACCCGGATGCATCACCATCG
GTTACCGTGGCAGCTTCCAGTTCGGCAAAGACGGACTGGCCGACGTTAAG
TTCCGGAAGCTGTCGCGCATCCTGGTCTGCGGCCGAGTGGCCCAGTGCCG
CGAGGTGTTCGGCGATACGCTGAACGAGTCCCGGGATCCGGATCATGGTG
GCACGGATCGGTACACCTCGCGGTTCTTCCTGAAGCACTGCTACATCGAG
CAGGCTTTCGACAATCTGCACGACCACGGATACCGCATGGCCGGAAGCTG
CGGATCCGGAACTGCCGGCTCGGCAGCGGAACCCAAGCCGGGCGTGGACA
CAGAGGAAAATCGCTGGAACCACTACAATGAGTTCGTCTTCATCCGGGAC
TAGAAGCTTTCTAGACCAT

BS07424.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10830-RA 687 CG10830-PA 1..687 17..703 3435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG10830-RA 2869 CG10830-RA 184..871 16..703 3440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20896450..20897137 703..16 3440 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:42:34 has no hits.

BS07424.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:08:06 Download gff for BS07424.complete
Subject Subject Range Query Range Percent Splice Strand
CG10830-RA 1..687 17..703 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:14 Download gff for BS07424.complete
Subject Subject Range Query Range Percent Splice Strand
CG10830-RA 177..871 9..703 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:00 Download gff for BS07424.complete
Subject Subject Range Query Range Percent Splice Strand
CG10830-RA 185..871 17..703 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:08:07 Download gff for BS07424.complete
Subject Subject Range Query Range Percent Splice Strand
CG10830-RA 177..871 9..703 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:37 Download gff for BS07424.complete
Subject Subject Range Query Range Percent Splice Strand
CG10830-RA 185..871 17..703 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:37 Download gff for BS07424.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20896450..20897136 17..703 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:00 Download gff for BS07424.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16722172..16722858 17..703 100   Minus

BS07424.pep Sequence

Translation from 16 to 702

> BS07424.pep
MPEIIELNVGGVSYTTTLATLLQDKSTLLAELFGEGRDSLAKDSKGRYFL
DRDGVLFRYILDFLRDKALHLPEGFRERQRLLREAEHFKLTAMLECIRSE
RDARPPGCITIGYRGSFQFGKDGLADVKFRKLSRILVCGRVAQCREVFGD
TLNESRDPDHGGTDRYTSRFFLKHCYIEQAFDNLHDHGYRMAGSCGSGTA
GSAAEPKPGVDTEENRWNHYNEFVFIRD*

BS07424.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10830-PA 228 CG10830-PA 1..228 1..228 1214 100 Plus
CG10440-PA 338 CG10440-PA 108..207 5..104 172 38.6 Plus
CG10440-PB 367 CG10440-PB 137..236 5..104 172 38.6 Plus
CG10465-PA 301 CG10465-PA 19..115 3..99 159 38.8 Plus