Clone Sequence Records
BS07425.3prime Sequence
839 bp (838 high quality bases) assembled on 2006-01-06
> BS07425.3prime
ATGGTCTAGAAAGCTTCTACATCAGCCGCCAACTCCATGCCCCCAGAATC
GTCCAGAGAGCCAGCGACAGGCCGTTCGATGCGGCTCCCGATCCGGCACT
GAGATGTCCCAGCTCCCGCTCGTCCACGACAAAGGCGGGCTGAGCACTGG
CGGGCGTCTGCTCCATGGCAAAGTTGCCGCGACTATTCCTGGCCAAGCGC
TGGTTGGCCAGCTTCAGCTCCCTAAGCTTCTCCTCCAGCTGCAGGACCTC
ATTCTTGTTGACACCCTCGATATCCTGAACCTGCAGGAACATGGCCAGCG
AGATCTCGTAGACCTTGTTCGCTGAGCTGATCTCTCGCTTGCGTCGACCG
AAGCCCACCTGGTTGTTGGAGCACTGGGTGCCGAGGCACTTGTCCAAACA
CACGTTGACCGTGGCACGGAATTGCACGTACGACGAGTCGGGGAACTTGA
AGGCCTTGAACTTGGCACTCAAAATGTCGCCATCAATGGTGTTGAAGTTC
TCGAAGAGATAGGGATCCACTGTGCAGCCCTTGAAGATCAACGTTTCCGA
TGACGTATGCGTATCCGTCACATCCAAATAGTTGACACCCAGACCATAAA
CAGGTGCAGAGTCCTCATCCAGATTGATTTCCATTGTCAAAGGTGTGCCC
GACTTGACAGTCAAATCCCTGGTGAACTTCTGACCATCCTGGCTAACGCC
AATTGAGAGTCGTGGCTCCGGGGCCCGCTTGGTCAGCGATGTGGTGATCT
CCAGATCCTCGGGTTCCTGGAATCCCGCCGGCAGCACATCCCGCTTGACC
AGGCCGTGGATGCCGCCGCTGGAAGTGGACGTGGAACTG
BS07425.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13432-PA | 1245 | l(2)05510-RA | 423..1245 | 839..17 | 4115 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:13:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qsm-RB | 1956 | CG13432-RB | 683..1508 | 839..14 | 4130 | 100 | Minus |
| qsm-RA | 1817 | CG13432-RA | 544..1369 | 839..14 | 4130 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:13:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20563789..20564069 | 248..528 | 1390 | 99.6 | Plus |
| 2R | 25286936 | 2R | 20563482..20563720 | 14..252 | 1195 | 100 | Plus |
| 2R | 25286936 | 2R | 20564130..20564252 | 528..650 | 615 | 100 | Plus |
| 2R | 25286936 | 2R | 20564322..20564431 | 649..758 | 550 | 100 | Plus |
| 2R | 25286936 | 2R | 20565000..20565081 | 758..839 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 14:13:09 has no hits.
BS07425.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:25 Download gff for
BS07425.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13432-PA | 423..1245 | 17..839 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:25 Download gff for
BS07425.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13432-PA | 423..1245 | 17..839 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:00:52 Download gff for
BS07425.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qsm-RA | 544..1374 | 7..839 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:32:47 Download gff for
BS07425.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qsm-RA | 544..1374 | 7..839 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:32:47 Download gff for
BS07425.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20565001..20565081 | 759..839 | 100 | | Plus |
| 2R | 20563477..20563720 | 7..252 | 98 | <- | Plus |
| 2R | 20563794..20564068 | 253..527 | 100 | <- | Plus |
| 2R | 20564130..20564251 | 528..649 | 100 | <- | Plus |
| 2R | 20564323..20564431 | 650..758 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:00:52 Download gff for
BS07425.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16452506..16452586 | 759..839 | 100 | | Plus |
| arm_2R | 16450982..16451225 | 7..252 | 98 | <- | Plus |
| arm_2R | 16451299..16451573 | 253..527 | 100 | <- | Plus |
| arm_2R | 16451635..16451756 | 528..649 | 100 | <- | Plus |
| arm_2R | 16451828..16451936 | 650..758 | 100 | <- | Plus |
BS07425.5prime Sequence
906 bp (774 high quality bases) assembled on 2006-01-06
> BS07425.5prime
GAAGTTATCAGTCGACATGCTGCTCTCAATGCAAATGTGGCGCTCTCTGT
GGCTGGCGGCCCTATTCTGCGGATTAGCCCAGGCCAAAGGTTCCCACAAG
GTGCACTGTTCGGAGGATCAGATGAGGGTTGACATCGGACTGCCGGATGC
GGAGTCAAAGGATCAGAGTGCTCCTCAGATCTATTTGGAGGGATTGAAGG
GATATCCGGATGAACGATGCCAGCCGCAAATCGATGGATCCCTGGCCGTT
TTTCGGCTTTCACTCAGCGATTTTTACGAGTGCGGAGTAACTCGAATGGT
CAACCAGCTAACGGGCAAGAAGGTGTATTACCATAAAATCATCATCGAGT
CAACCAGCGGCAAGGAGATCGTCAGCGTTAAGTGCATCACCACCGCCAGT
CCCGCCTATAATGTGATGATGAATGCCACCACCGGGTCCAGTTCCACGTC
CACTTCCAGCGGCGGCATCCACGGCCTGGTCAAGCGGGATGTGCTGCCGG
CGGGATTCCAGGAACCCGAGGATCTGGAGATCACCACATCGCTGACCAAG
CGGGCCCCGGAGCCACGACTCTCAATTGGCGTTAGCCAGGATGGTCAGAA
GTTCACCAGGGATTTGACTGTCAAGTCGGGCACACCTTTGACAATGGAAA
TCAATCTGGATGAGGACTCTGCACCTGTTTATGGTCTGGGTGTCAACTAT
TTGGATGTGACGGATACGCATACGTCATCGGAAACGTTGATCTTCAAGGG
CTGCACAGTGGATCCCTATCTCTTCGAGAACTTCAACACCATTGATGGCG
ACATTTTGAGTGCCAAGTTCAAGGCCTTCAAGTTCCCCGACTCGTCGTAC
GTGCAATTCCGTGCCAACGTCAACGTGTGTTTGGACAAGTGCCTCGGCAC
CCAGTG
BS07425.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13432-PA | 1245 | l(2)05510-RA | 1..890 | 17..906 | 4400 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:13:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qsm-RB | 1956 | CG13432-RB | 261..1150 | 17..906 | 4420 | 99.8 | Plus |
| qsm-RA | 1817 | CG13432-RA | 122..1011 | 17..906 | 4420 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:12:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20565277..20565503 | 314..88 | 1135 | 100 | Minus |
| 2R | 25286936 | 2R | 20565000..20565207 | 520..313 | 1040 | 100 | Minus |
| 2R | 25286936 | 2R | 20563913..20564069 | 906..750 | 755 | 98.7 | Minus |
| 2R | 25286936 | 2R | 20564130..20564252 | 750..628 | 615 | 100 | Minus |
| 2R | 25286936 | 2R | 20564322..20564431 | 629..520 | 550 | 100 | Minus |
| 2R | 25286936 | 2R | 20581559..20581633 | 91..17 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:12:58 has no hits.
BS07425.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:26 Download gff for
BS07425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13432-PA | 1..890 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:26 Download gff for
BS07425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13432-PA | 1..890 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:01:37 Download gff for
BS07425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qsm-RA | 122..1011 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:50:40 Download gff for
BS07425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qsm-RA | 122..1011 | 17..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:50:40 Download gff for
BS07425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20565278..20565501 | 90..313 | 100 | <- | Minus |
| 2R | 20581561..20581633 | 17..89 | 100 | | Minus |
| 2R | 20563913..20564068 | 751..906 | 98 | <- | Minus |
| 2R | 20564130..20564251 | 629..750 | 100 | <- | Minus |
| 2R | 20564323..20564431 | 520..628 | 100 | <- | Minus |
| 2R | 20565001..20565206 | 314..519 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:01:37 Download gff for
BS07425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16451418..16451573 | 751..906 | 98 | <- | Minus |
| arm_2R | 16451635..16451756 | 629..750 | 100 | <- | Minus |
| arm_2R | 16452783..16453006 | 90..313 | 100 | <- | Minus |
| arm_2R | 16469066..16469138 | 17..89 | 100 | | Minus |
| arm_2R | 16451828..16451936 | 520..628 | 100 | <- | Minus |
| arm_2R | 16452506..16452711 | 314..519 | 100 | <- | Minus |
BS07425.complete Sequence
1277 bp (1277 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635857
> BS07425.complete
GAAGTTATCAGTCGACATGCTGCTCTCAATGCAAATGTGGCGCTCTCTGT
GGCTGGCGGCCCTATTCTGCGGATTAGCCCAGGCCAAAGGTTCCCACAAG
GTGCACTGTTCGGAGGATCAGATGAGGGTTGACATCGGACTGCCGGATGC
GGAGTCAAAGGATCAGAGTGCTCCTCAGATCTATTTGGAGGGATTGAAGG
GATATCCGGATGAACGATGCCAGCCGCAAATCGATGGATCCCTGGCCGTT
TTTCGGCTTTCACTCAGCGATTTTTACGAGTGCGGAGTAACTCGAATGGT
CAACCAGCTAACGGGCAAGAAGGTGTATTACCATAAAATCATCATCGAGT
CAACCAGCGGCAAGGAGATCGTCAGCGTTAAGTGCATCACCACCGCCAGT
CCCGCCTATAATGTGATGATGAATGCCACCACCGGGTCCAGTTCCACGTC
CACTTCCAGCGGCGGCATCCACGGCCTGGTCAAGCGGGATGTGCTGCCGG
CGGGATTCCAGGAACCCGAGGATCTGGAGATCACCACATCGCTGACCAAG
CGGGCCCCGGAGCCACGACTCTCAATTGGCGTTAGCCAGGATGGTCAGAA
GTTCACCAGGGATTTGACTGTCAAGTCGGGCACACCTTTGACAATGGAAA
TCAATCTGGATGAGGACTCTGCACCTGTTTATGGTCTGGGTGTCAACTAT
TTGGATGTGACGGATACGCATACGTCATCGGAAACGTTGATCTTCAAGGG
CTGCACAGTGGATCCCTATCTCTTCGAGAACTTCAACACCATTGATGGCG
ACATTTTGAGTGCCAAGTTCAAGGCCTTCAAGTTCCCCGACTCGTCGTAC
GTGCAATTCCGTGCCACGGTCAACGTGTGTTTGGACAAGTGCCTCGGCAC
CCAGTGCTCCAACAACCAGGTGGGCTTCGGTCGACGCAAGCGAGAGATCA
GCTCAGCGAACAAGGTCTACGAGATCTCGCTGGCCATGTTCCTGCAGGTT
CAGGATATCGAGGGTGTCAACAAGAATGAGGTCCTGCAGCTGGAGGAGAA
GCTTAGGGAGCTGAAGCTGGCCAACCAGCGCTTGGCCAGGAATAGTCGCG
GCAACTTTGCCATGGAGCAGACGCCCGCCAGTGCTCAGCCCGCCTTTGTC
GTGGACGAGCGGGAGCTGGGACATCTCAGTGCCGGATCGGGAGCCGCATC
GAACGGCCTGTCGCTGGCTCTCTGGACGATTCTGGGGGCATGGAGTTGGC
GGCTGATGTAGAAGCTTTCTAGACCAT
BS07425.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:41:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qsm-RB | 1245 | CG13432-PB | 1..1245 | 17..1261 | 6225 | 100 | Plus |
| qsm-RA | 1245 | CG13432-PA | 1..1245 | 17..1261 | 6225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:41:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qsm-RB | 1956 | CG13432-RB | 261..1508 | 17..1264 | 6240 | 100 | Plus |
| qsm-RA | 1817 | CG13432-RA | 122..1369 | 17..1264 | 6240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:41:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20563789..20564069 | 1030..750 | 1390 | 99.6 | Minus |
| 2R | 25286936 | 2R | 20563482..20563720 | 1264..1026 | 1195 | 100 | Minus |
| 2R | 25286936 | 2R | 20565277..20565503 | 314..88 | 1135 | 100 | Minus |
| 2R | 25286936 | 2R | 20565000..20565207 | 520..313 | 1040 | 100 | Minus |
| 2R | 25286936 | 2R | 20564130..20564252 | 750..628 | 615 | 100 | Minus |
| 2R | 25286936 | 2R | 20564322..20564431 | 629..520 | 550 | 100 | Minus |
| 2R | 25286936 | 2R | 20581559..20581633 | 91..17 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:41:43 has no hits.
BS07425.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:13:34 Download gff for
BS07425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)05510-RA | 1..1245 | 17..1261 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:43:48 Download gff for
BS07425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)05510-RA | 118..1362 | 17..1261 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:38 Download gff for
BS07425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qsm-RA | 122..1366 | 17..1261 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:13:35 Download gff for
BS07425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)05510-RA | 118..1370 | 17..1271 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:16:24 Download gff for
BS07425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qsm-RA | 122..1366 | 17..1261 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:16:24 Download gff for
BS07425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20565001..20565206 | 314..519 | 100 | <- | Minus |
| 2R | 20565278..20565501 | 90..313 | 100 | <- | Minus |
| 2R | 20563485..20563720 | 1026..1261 | 100 | <- | Minus |
| 2R | 20563794..20564068 | 751..1025 | 100 | <- | Minus |
| 2R | 20564130..20564251 | 629..750 | 100 | <- | Minus |
| 2R | 20564323..20564431 | 520..628 | 100 | <- | Minus |
| 2R | 20581561..20581633 | 17..89 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:38 Download gff for
BS07425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16450990..16451225 | 1026..1261 | 100 | <- | Minus |
| arm_2R | 16451299..16451573 | 751..1025 | 100 | <- | Minus |
| arm_2R | 16451635..16451756 | 629..750 | 100 | <- | Minus |
| arm_2R | 16451828..16451936 | 520..628 | 100 | <- | Minus |
| arm_2R | 16452506..16452711 | 314..519 | 100 | <- | Minus |
| arm_2R | 16452783..16453006 | 90..313 | 100 | <- | Minus |
| arm_2R | 16469066..16469138 | 17..89 | 100 | | Minus |
BS07425.pep Sequence
Translation from 16 to 1260
> BS07425.pep
MLLSMQMWRSLWLAALFCGLAQAKGSHKVHCSEDQMRVDIGLPDAESKDQ
SAPQIYLEGLKGYPDERCQPQIDGSLAVFRLSLSDFYECGVTRMVNQLTG
KKVYYHKIIIESTSGKEIVSVKCITTASPAYNVMMNATTGSSSTSTSSGG
IHGLVKRDVLPAGFQEPEDLEITTSLTKRAPEPRLSIGVSQDGQKFTRDL
TVKSGTPLTMEINLDEDSAPVYGLGVNYLDVTDTHTSSETLIFKGCTVDP
YLFENFNTIDGDILSAKFKAFKFPDSSYVQFRATVNVCLDKCLGTQCSNN
QVGFGRRKREISSANKVYEISLAMFLQVQDIEGVNKNEVLQLEEKLRELK
LANQRLARNSRGNFAMEQTPASAQPAFVVDERELGHLSAGSGAASNGLSL
ALWTILGAWSWRLM*
BS07425.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qsm-PB | 414 | CG13432-PB | 1..414 | 1..414 | 2134 | 100 | Plus |
| qsm-PA | 414 | CG13432-PA | 1..414 | 1..414 | 2134 | 100 | Plus |
| nompA-PF | 1306 | CG13207-PF | 810..1053 | 74..344 | 171 | 25.4 | Plus |
| nompA-PD | 1549 | CG13207-PD | 1061..1304 | 74..344 | 171 | 25.4 | Plus |
| nompA-PC | 1549 | CG13207-PC | 1061..1304 | 74..344 | 171 | 25.4 | Plus |
