Clone BS07428 Report

Search the DGRC for BS07428

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG6126-RA
Protein status:BS07428.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07428.3prime Sequence

899 bp (810 high quality bases) assembled on 2006-01-06

> BS07428.3prime
ATGGTCTAGAAAGCTTCTACTTGCTCTCGATGTTCTTGAGCGGCACCATT
TGCTCCGGATCGTCGGGATATACGCTATTCTGGCGCTTTTTGCGACCAGC
ACACTGACTGAACCAAGTATCTCCCTTTCCGAAGTTCTCTCCATCCTCAA
TGGACTCGGGCATGGGCTGGTTCATTGTCTCCGGCAGGAACATAACCCAG
AAGCCCGAGATCAGGGCCACCACGCCGAACAGCACGGCCGGTATCTTCGG
ATCAAATGAGTCCAGCAATGTAATGAGCGGAGTAAGGGCTCCCGACAAAC
GGGCACACATCGATCCCAATCCCATGGCCGAGTTCCGCACCACGGTGGGA
AACAGTTCGGCTGAGTAATTGTAGATTACGGCAAAGGAACCGGCGATGAG
GAGCTTTCCTGCCATTACCACCGCCGTGGAGGTGGTGCTGCCCTGGGCAA
TGTAGGCGGCCACAATGCAGCATAGACCGCCACCCAACATCAGGGTGGAG
GTGATCGATCGACGACCCAGGCGATCTAGGACGAACACAATGGTTATGTA
GCTGGGGAACTCCACGAGGCCCATGATGAACAGGATCAGGTAGGGATTTC
CATACAGCTTGCCGGCACTGAGCGATAGTCCGTAATAAACCAGAGAATTG
GCGAACCAGCAGAGGCACACGTTCAAAGTCTTCATCCTCAAGTTGGGCGT
GCGGAAGAGGTCGCTCAATCCGGCGCTGGATTTTTCTTCGGCCGCCGCCT
GCTGTTTGGCTTTCTGCACATAGTACTCCTTGTCCACCGGGATGCCCGAT
CCGTTGATTCTCAGGCCCTTGGCCACAATATCCACCGCCTCGGCGGCACG
TCCCTGCATCCACAGCCAGCGCGGAGATTCATCGAGCCACACCAGTGGC

BS07428.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG6126-PA 1668 CG6126-RA 795..1668 890..17 4370 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6126-RA 2126 CG6126-RA 1035..1920 899..15 4405 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16198206..16199081 15..890 4380 100 Plus
Blast to na_te.dros performed on 2015-02-12 03:53:31 has no hits.

BS07428.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:30 Download gff for BS07428.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6126-PA 785..1668 17..899 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:32 Download gff for BS07428.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6126-PA 785..1668 17..899 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:55:32 Download gff for BS07428.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6126-RA 1032..1922 6..899 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:46:57 Download gff for BS07428.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6126-RA 1035..1925 6..899 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:46:57 Download gff for BS07428.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16198201..16199091 6..899 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:55:32 Download gff for BS07428.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12023923..12024813 6..899 99   Plus

BS07428.5prime Sequence

913 bp (854 high quality bases) assembled on 2006-01-06

> BS07428.5prime
GAAGTTATCAGTCGACATGGCTGTGGATTATGTACTGGAGGACCTGATGG
GGAAACTTGGGGAGTTTGGAAAGTACCAGTTCCTGCAGTTCTTCCTGCAG
GTGCTCTCCGGCCTGACCGCTGGCATGCACATGCTATCGCTGGTCACGGT
GGCCGCCGTGCCTGAGCATCGCTGCTTCATCGAGGGCGTGGATAACAGCA
GCTTGTCGGTGACACCATGGAACTCGAGCGCTATCCTGGCCGCCATTCCG
CTGAAGCCCAATGGCGAGCTAGAGTCCTGCCTCATGTTCGATCCCAGTAG
TCCTGGCACCAATACCACCATCAATTGCGAACGTTACGTATACGACACGA
CGTACTACAAGACTTCGCGCACCATCGACTGGAACTTTGTGTGCGATCGC
CGCTGGATGGGAGCCATTGTGCAGACCGTGTTCATGCTGGGCGTGTTCAC
AGGCGCAGTCACCCTTGGCGGACTCGCCGACAAAGTGGGTCGGAAAACCG
TGTTCTGCTGGTCGGCCCTGTTCCAATTGATCATCGGTGTGGGTGTGGCC
TTCATTCCCGAGTACTTCTCATTCATGGTGGCTCGCTACCTGCTGGGCAT
TGTGGGATCAGCGGGTGCCTACATCTGTGGGTTCGTGCTGACCATGGAAC
TGGTGGGACCTACCAAGCGTACTGTGTGCGGCATTACCTTCCAGGCTGTT
TTCGCTGGTGGCATCATGTTGGTGGCCGGATGGGGAGCACTCATCCCTGA
CCGCCAGTGGCTCCAAGTGATCTACGGACTGCATGGCTGTCTGTTCCTGG
GCCACTGGTGGTGGCTCGATGAATCTCCGCGCTGGCTGTGGATGCAGGGA
CGTGCCGCCGAGGCGGTGGATATTGTGGCCAAGGGCCTGAGAATCAACGG
ATCGGGCATCCCC

BS07428.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG6126-PA 1668 CG6126-RA 1..896 17..912 4480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:33:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6126-RA 2126 CG6126-RA 249..1146 15..912 4490 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:33:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16199259..16199895 695..59 3185 100 Minus
3R 32079331 3R 16198980..16199199 912..693 1100 100 Minus
3R 32079331 3R 16202785..16202835 65..15 240 98 Minus
Blast to na_te.dros performed on 2015-02-10 23:33:14 has no hits.

BS07428.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:32 Download gff for BS07428.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6126-PA 1..896 17..913 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:33 Download gff for BS07428.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6126-PA 1..896 17..913 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:34:51 Download gff for BS07428.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6126-RA 241..1143 7..913 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:06:18 Download gff for BS07428.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6126-RA 244..1146 7..913 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:06:18 Download gff for BS07428.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16198979..16199197 695..913 99 <- Minus
3R 16199260..16199894 60..694 100 <- Minus
3R 16202791..16202840 7..59 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:34:51 Download gff for BS07428.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12024701..12024919 695..913 99 <- Minus
arm_3R 12024982..12025616 60..694 100 <- Minus
arm_3R 12028513..12028562 7..59 92   Minus

BS07428.complete Sequence

1700 bp assembled on 2007-10-17

GenBank Submission: FJ635858

> BS07428.complete
GAAGTTATCAGTCGACATGGCTGTGGATTATGTACTGGAGGACCTGATGG
GGAAACTTGGGGAGTTTGGAAAGTACCAGTTCCTGCAGTTCTTCCTGCAG
GTGCTCTCCGGCCTGACCGCTGGCATGCACATGCTATCGCTGGTCACGGT
GGCCGCCGTGCCTGAGCATCGCTGCTTCATCGAGGGCGTGGATAACAGCA
GCTTGTCGGTGACACCATGGAACTCGAGCGCTATCCTGGCCGCCATTCCG
CTGAAGCCCAATGGCGAGCTAGAGTCCTGCCTCATGTTCGATCCCAGTAG
TCCTGGCACCAATACCACCATCAATTGCGAACGTTACGTATACGACACGA
CGTACTACAAGACTTCGCGCACCATCGACTGGAACTTTGTGTGCGATCGC
CGCTGGATGGGAGCCATTGTGCAGACCGTGTTCATGCTGGGCGTGTTCAC
AGGCGCAGTCACCCTTGGCGGACTCGCCGACAAAGTGGGTCGGAAAACCG
TGTTCTGCTGGTCGGCCCTGTTCCAATTGATCATCGGTGTGGGTGTGGCC
TTCATTCCCGAGTACTTCTCATTCATGGTGGCTCGCTACCTGCTGGGCAT
TGTGGGATCAGCGGGTGCCTACATCTGTGGGTTCGTGCTGACCATGGAAC
TGGTGGGACCTACCAAGCGTACTGTGTGCGGCATTACCTTCCAGGCTGTT
TTCGCTGGTGGCATCATGTTGGTGGCCGGATGGGGAGCACTCATCCCTGA
CCGCCAGTGGCTCCAAGTGATCTACGGACTGCATGGCTGTCTGTTCCTGG
GCCACTGGTGGTGGCTCGATGAATCTCCGCGCTGGCTGTGGATGCAGGGA
CGTGCCGCCGAGGCGGTGGATATTGTGGCCAAGGGCCTGAGAATCAACGG
ATCGGGCATCCCGGTGGACAAGGAGTACTATGTGCAGAAAGCCAAACAGC
AGGCGGCGGCCGAAGAAAAATCCAGCGCCGGATTGAGCGACCTCTTCCGC
ACGCCCAACTTGAGGATGAAGACTTTGAACGTGTGCCTCTGCTGGTTCGC
CAATTCTCTGGTTTATTACGGACTATCGCTCAGTGCCGGCAAGCTGTATG
GAAATCCCTACCTGATCCTGTTCATCATGGGCCTCGTGGAGTTCCCCAGC
TACATAACCATTGTGTTCGTCCTAGATCGCCTGGGTCGTCGATCGATCAC
CTCCACCCTGATGTTGGGTGGCGGTCTATGCTGCATTGTGGCCGCCTACA
TTGCCCAGGGCAGCACCACCTCCACGGCGGTGGTAATGGCAGGAAAGCTC
CTCATCGCCGGTTCCTTTGCCGTAATCTACAATTACTCAGCCGAACTGTT
TCCCACCGTGGTGCGGAACTCGGCCATGGGATTGGGATCGATGTGTGCCC
GTTTGTCGGGAGCCCTTACTCCGCTCATTACATTGCTGGACTCATTTGAT
CCGAAGATACCGGCCGTGCTGTTCGGCGTGGTGGCCCTGATCTCGGGCTT
CTGGGTTATGTTCCTGCCGGAGACAATGAACCAGCCCATGCCCGAGTCCA
TTGAGGATGGAGAGAACTTCGGAAAGGGAGATACTTGGTTCAGTCAGTGT
GCTGGTCGCAAAAAGCGCCAGAATAGCGTATATCCCGACGATCCGGAGCA
AATGGTGCCGCTCAAGAACATCGAGAGCAAGTAGAAGCTTTCTAGACCAT

BS07428.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:57:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6126-RA 1668 CG6126-PA 1..1668 17..1684 8340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:57:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6126-RA 2126 CG6126-RA 249..1920 15..1686 8360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16198206..16199199 1686..693 4970 100 Minus
3R 32079331 3R 16199259..16199895 695..59 3185 100 Minus
3R 32079331 3R 16202785..16202835 65..15 240 98 Minus
Blast to na_te.dros performed on 2014-11-27 23:57:12 has no hits.

BS07428.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:26 Download gff for BS07428.complete
Subject Subject Range Query Range Percent Splice Strand
CG6126-RA 1..1668 17..1684 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:36:50 Download gff for BS07428.complete
Subject Subject Range Query Range Percent Splice Strand
CG6126-RA 241..1922 7..1695 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:42:16 Download gff for BS07428.complete
Subject Subject Range Query Range Percent Splice Strand
CG6126-RA 248..1915 17..1684 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:32:39 Download gff for BS07428.complete
Subject Subject Range Query Range Percent Splice Strand
CG6126-RA 248..1915 17..1684 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:33 Download gff for BS07428.complete
Subject Subject Range Query Range Percent Splice Strand
CG6126-RA 251..1918 17..1684 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:33 Download gff for BS07428.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16198208..16199197 695..1684 100 <- Minus
3R 16199260..16199894 60..694 100 <- Minus
3R 16202791..16202833 17..59 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:42:16 Download gff for BS07428.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12023930..12024919 695..1684 100 <- Minus
arm_3R 12024982..12025616 60..694 100 <- Minus
arm_3R 12028513..12028555 17..59 100   Minus

BS07428.pep Sequence

Translation from 16 to 1683

> BS07428.pep
MAVDYVLEDLMGKLGEFGKYQFLQFFLQVLSGLTAGMHMLSLVTVAAVPE
HRCFIEGVDNSSLSVTPWNSSAILAAIPLKPNGELESCLMFDPSSPGTNT
TINCERYVYDTTYYKTSRTIDWNFVCDRRWMGAIVQTVFMLGVFTGAVTL
GGLADKVGRKTVFCWSALFQLIIGVGVAFIPEYFSFMVARYLLGIVGSAG
AYICGFVLTMELVGPTKRTVCGITFQAVFAGGIMLVAGWGALIPDRQWLQ
VIYGLHGCLFLGHWWWLDESPRWLWMQGRAAEAVDIVAKGLRINGSGIPV
DKEYYVQKAKQQAAAEEKSSAGLSDLFRTPNLRMKTLNVCLCWFANSLVY
YGLSLSAGKLYGNPYLILFIMGLVEFPSYITIVFVLDRLGRRSITSTLML
GGGLCCIVAAYIAQGSTTSTAVVMAGKLLIAGSFAVIYNYSAELFPTVVR
NSAMGLGSMCARLSGALTPLITLLDSFDPKIPAVLFGVVALISGFWVMFL
PETMNQPMPESIEDGENFGKGDTWFSQCAGRKKRQNSVYPDDPEQMVPLK
NIESK*

BS07428.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:18:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG6126-PA 555 CG6126-PA 1..555 1..555 2916 100 Plus
Orct-PB 548 CG6331-PB 4..523 8..520 907 39 Plus
Orct-PA 548 CG6331-PA 4..523 8..520 907 39 Plus
Orct2-PB 567 CG13610-PB 10..529 14..520 830 37.5 Plus
Orct2-PA 567 CG13610-PA 10..529 14..520 830 37.5 Plus