Clone Sequence Records
BS07429.3prime Sequence
882 bp (775 high quality bases) assembled on 2006-01-06
> BS07429.3prime
ATGGTCTAGAAAGCTTCTAGAACTTGGAAATCCTGGCCGTGTTAAGGGCC
TCCGTCATCAGTCTTCCGAAATCGGAGTGCACCATGGTGAACAGTTTCAC
TGCCCGCTCCTGAAGGAACTGGCTAGCTTCGGTCAGATGCTCGGACAAGT
TGCGAACTAGCCGCTTGCGGCCGCAGTTATCCAGGGTGTAGGTCCAGAAG
TCGGTGACCTGACTGAAATTGTCCTCGGTGTCACCGCTCATAAATCGATA
GACATCTCCGCTCAACGGACAGCACGTCTGCAGGCCCAAGGCCCGCGGAC
TTTCCCTTGGTCCGCAAAAGGAATTGGGGAAGTAGTTGGGAGCCCCGTTC
TGATTGTCAGTCACTGTCATAGCACCATCCCTCTGGAAGTTGCGAACATT
CACGCGGTACGGACAATTCACCGGTATCTGCATGTAGTTCACGCCCAAAC
GATGGCGCTGCGAATCGCCGTAGGCGAAGAGGCGACCCTGGAGCATCTTA
TCCGGCGATGGCTCGATGCCCGGCACCATGTGGGCCGGACTGAAGGCCAG
CTGCTCCACCTCTGTGAAATAGTTGGTGGGATTGCGATCTAGAACAATCT
TGCCAACTGGAAGCAGGGGGAAGTCCTTCTGGGGCCATACCTTGGTCACA
TCGAACGGATTGAAACGACACTTTTTCGCCTCCTCGTTGAGCATCACCTG
AATGTACATTGACCAACTGGGATAGTTGCCCTTCTTGATCGAGTTGTACA
GATCCCTGATGGCATAGTCCGGATCGTGGGACATCAGCTCCTCGCATCGT
CGGGCGTCCAGGTTCTTGATGCCCTGGTCCGTCTTGAAGTGGAACCTAAC
GTATTGCGTCTCCCACTGGCATTGATCATGCG
BS07429.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9314-PA | 1521 | CG9314-RA | 674..1521 | 864..17 | 4240 | 100 | Minus |
CG6871-PA | 1521 | Cat-RA | 693..733 | 845..805 | 180 | 97.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:07:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9314-RC | 1893 | CG9314-RC | 778..1644 | 882..17 | 4310 | 99.9 | Minus |
CG9314-RA | 1806 | CG9314-RA | 778..1644 | 882..17 | 4310 | 99.9 | Minus |
Cat-RA | 1993 | CG6871-RA | 875..1654 | 845..66 | 935 | 75.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:06:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8706596..8707278 | 699..17 | 3415 | 100 | Minus |
2L | 23513712 | 2L | 8706349..8706536 | 882..696 | 890 | 99.5 | Minus |
3L | 28110227 | 3L | 18827354..18827849 | 561..66 | 575 | 74.4 | Minus |
3L | 28110227 | 3L | 18826973..18827248 | 845..570 | 330 | 74.6 | Minus |
Blast to na_te.dros performed on 2015-02-03 12:07:03 has no hits.
BS07429.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:33 Download gff for
BS07429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9314-PA | 655..1521 | 17..882 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:35 Download gff for
BS07429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9314-PA | 655..1521 | 17..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:46:33 Download gff for
BS07429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9314-RA | 778..1644 | 17..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:38:30 Download gff for
BS07429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9314-RA | 778..1644 | 17..882 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:38:30 Download gff for
BS07429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8706349..8706534 | 698..882 | 99 | -> | Minus |
2L | 8706598..8707278 | 17..697 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:46:33 Download gff for
BS07429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8706349..8706534 | 698..882 | 99 | -> | Minus |
arm_2L | 8706598..8707278 | 17..697 | 100 | | Minus |
BS07429.5prime Sequence
886 bp (852 high quality bases) assembled on 2006-01-06
> BS07429.5prime
GAAGTTATCAGTCGACATGTGTTCACGCGATACGGCGTCAAATCAATTGA
TTGACTATAAGAACAATGACTCCGAGGTGCAAAGGGAGATCACGACATCC
AGTGGAACTCCAGTTGGCGTCAAGGATGCCATACAGACGGTGGGACCAAG
GGGTCCTGCCCTGCTGCAGGATTTCCAGTTCCTCGACGAGGTGATGCACT
TCGACTCGGAGCGGATTCCCGAACGGGTGGCCTACGCCAAGGGAGCCGGC
GCCTTTGGTTACTTCGAGTGCACCCATGACATTTCAAAATTCTGTGCAGC
CTCCATATTCGATAAGGTTAGAAAACGAACTGCCGTCGCGATGAGATTCT
CGGTGGCCTGCGGTGAACAGGGATCTGCGGATACGGTACGTGAACAGCGC
GGATTTGCCGTCAAATTCTACACCGACGACGGCATCTGGGACATTGTGGG
TTGCAACATGCCCGTGCATTATGTCCGGGATCCCATGTTGTTCCCCAGCT
TGGTTCATGCCCAAAAGCGCAATCCCCAGACCCACCTGAAGGATCCGGAC
ATGTTCTGGGACTTCATGACCCTGCGTCCGGAAACCCTGCATGCCCTGCT
CATGTACTTTAGCGATCGGGGAACCCCAGATGGCTATCGCCACCTGCACG
GATACGGTGTGCACACCTACCGCATGATCAATGCCAGTGGGGAGACGCAA
TACGTTAGGTTCCACTTCAAGACGGACCAGGGCATCAAGAACCTGGACGC
CCGACGATGCGAGGAGCTGATGTCCCACGATCCGGACTATGCCATCAGGG
ATCTGTACAACTCGATCAAGAAGGGCAACTATCCCAGTTGGTCAATGTAC
ATTCAGGTGATGCTCANCGAGGAGGCGAAAAAGTGT
BS07429.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9314-PA | 1521 | CG9314-RA | 1..870 | 17..886 | 4331 | 99.8 | Plus |
CG6871-PA | 1521 | Cat-RA | 693..733 | 709..749 | 180 | 97.5 | Plus |
CG6871-PA | 1521 | Cat-RA | 499..566 | 515..582 | 165 | 89.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:24:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9314-RC | 1893 | CG9314-RC | 124..993 | 17..886 | 4339 | 99.9 | Plus |
CG9314-RA | 1806 | CG9314-RA | 124..993 | 17..886 | 4339 | 99.9 | Plus |
Cat-RA | 1993 | CG6871-RA | 286..1050 | 120..884 | 609 | 73.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:24:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8705695..8706536 | 17..858 | 4210 | 100 | Plus |
3L | 28110227 | 3L | 18826384..18827013 | 120..749 | 570 | 72.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:24:45 has no hits.
BS07429.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:34 Download gff for
BS07429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9314-PA | 1..870 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:36 Download gff for
BS07429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9314-PA | 1..870 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:00:01 Download gff for
BS07429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9314-RA | 124..993 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:06:48 Download gff for
BS07429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9314-RA | 124..993 | 17..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:06:48 Download gff for
BS07429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8705695..8706534 | 17..856 | 100 | -> | Plus |
2L | 8706598..8706627 | 857..886 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:00:01 Download gff for
BS07429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8705695..8706534 | 17..856 | 100 | -> | Plus |
arm_2L | 8706598..8706627 | 857..886 | 96 | | Plus |
BS07429.complete Sequence
1553 bp (1553 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635859
> BS07429.complete
GAAGTTATCAGTCGACATGTGTTCACGCGATACGGCGTCAAATCAATTGA
TTGACTATAAGAACAATGACTCCGAGGTGCAAAGGGAGATCACGACATCC
AGTGGAACTCCAGTTGGCGTCAAGGATGCCATACAGACGGTGGGACCAAG
GGGTCCTGCCCTGCTGCAGGATTTCCAGTTCCTCGACGAGGTGATGCACT
TCGACTCGGAGCGGATTCCCGAACGGGTGGCCTACGCCAAGGGAGCCGGC
GCCTTTGGTTACTTCGAGTGCACCCATGACATTTCAAAATTCTGTGCAGC
CTCCATATTCGATAAGGTTAGAAAACGAACTGCCGTCGCGATGAGATTCT
CGGTGGCCTGCGGTGAACAGGGATCTGCGGATACGGTACGTGAACAGCGC
GGATTTGCCGTCAAATTCTACACCGACGACGGCATCTGGGACATTGTGGG
TTGCAACATGCCCGTGCATTATGTCCGGGATCCCATGTTGTTCCCCAGCT
TGGTTCATGCCCAAAAGCGCAATCCCCAGACCCACCTGAAGGATCCGGAC
ATGTTCTGGGACTTCATGACCCTGCGTCCGGAAACCCTGCATGCCCTGCT
CATGTACTTTAGCGATCGGGGAACCCCAGATGGCTATCGCCACCTGCACG
GATACGGTGTGCACACCTACCGCATGATCAATGCCAGTGGGGAGACGCAA
TACGTTAGGTTCCACTTCAAGACGGACCAGGGCATCAAGAACCTGGACGC
CCGACGATGCGAGGAGCTGATGTCCCACGATCCGGACTATGCCATCAGGG
ATCTGTACAACTCGATCAAGAAGGGCAACTATCCCAGTTGGTCAATGTAC
ATTCAGGTGATGCTCAACGAGGAGGCGAAAAAGTGTCGTTTCAATCCGTT
CGATGTGACCAAGGTATGGCCCCAGAAGGACTTCCCCCTGCTTCCAGTTG
GCAAGATTGTTCTAGATCGCAATCCCACCAACTATTTCACAGAGGTGGAG
CAGCTGGCCTTCAGTCCGGCCCACATGGTGCCGGGCATCGAGCCATCGCC
GGATAAGATGCTCCAGGGTCGCCTCTTCGCCTACGGCGATTCGCAGCGCC
ATCGTTTGGGCGTGAACTACATGCAGATACCGGTGAATTGTCCGTACCGC
GTGAATGTTCGCAACTTCCAGAGGGATGGTGCTATGACAGTGACTGACAA
TCAGAACGGGGCTCCCAACTACTTCCCCAATTCCTTTTGCGGACCAAGGG
AAAGTCCGCGGGCCTTGGGCCTGCAGACGTGCTGTCCGTTGAGCGGAGAT
GTCTATCGATTTATGAGCGGTGACACCGAGGACAATTTCAGTCAGGTCAC
CGACTTCTGGACCTACACCCTGGATAACTGCGGCCGCAAGCGGCTAGTTC
GCAACTTGTCCGAGCATCTGACCGAAGCTAGCCAGTTCCTTCAGGAGCGG
GCAGTGAAACTGTTCACCATGGTGCACTCCGATTTCGGAAGACTGATGAC
GGAGGCCCTTAACACGGCCAGGATTTCCAAGTTCTAGAAGCTTTCTAGAC
CAT
BS07429.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:51:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9314-RC | 1521 | CG9314-PC | 1..1521 | 17..1537 | 7605 | 100 | Plus |
CG9314-RA | 1521 | CG9314-PA | 1..1521 | 17..1537 | 7605 | 100 | Plus |
Cat-RA | 1521 | CG6871-PA | 104..1472 | 120..1488 | 1265 | 72.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:51:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9314-RC | 1893 | CG9314-RC | 124..1644 | 17..1537 | 7605 | 100 | Plus |
CG9314-RA | 1806 | CG9314-RA | 124..1644 | 17..1537 | 7605 | 100 | Plus |
Cat-RA | 1993 | CG6871-RA | 286..1654 | 120..1488 | 1265 | 72.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:51:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8705695..8706536 | 17..858 | 4210 | 100 | Plus |
2L | 23513712 | 2L | 8706596..8707278 | 855..1537 | 3415 | 100 | Plus |
3L | 28110227 | 3L | 18826384..18827248 | 120..984 | 710 | 72.1 | Plus |
3L | 28110227 | 3L | 18827354..18827849 | 993..1488 | 575 | 74.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:51:23 has no hits.
BS07429.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:51 Download gff for
BS07429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9314-RA | 1..1521 | 17..1537 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:59 Download gff for
BS07429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9314-RA | 124..1644 | 17..1537 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:34 Download gff for
BS07429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9314-RA | 124..1644 | 17..1537 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:51 Download gff for
BS07429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9314-RA | 124..1644 | 17..1537 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:13 Download gff for
BS07429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9314-RA | 124..1644 | 17..1537 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:13 Download gff for
BS07429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8705695..8706534 | 17..856 | 100 | -> | Plus |
2L | 8706598..8707278 | 857..1537 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:34 Download gff for
BS07429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8705695..8706534 | 17..856 | 100 | -> | Plus |
arm_2L | 8706598..8707278 | 857..1537 | 100 | | Plus |
BS07429.pep Sequence
Translation from 16 to 1536
> BS07429.pep
MCSRDTASNQLIDYKNNDSEVQREITTSSGTPVGVKDAIQTVGPRGPALL
QDFQFLDEVMHFDSERIPERVAYAKGAGAFGYFECTHDISKFCAASIFDK
VRKRTAVAMRFSVACGEQGSADTVREQRGFAVKFYTDDGIWDIVGCNMPV
HYVRDPMLFPSLVHAQKRNPQTHLKDPDMFWDFMTLRPETLHALLMYFSD
RGTPDGYRHLHGYGVHTYRMINASGETQYVRFHFKTDQGIKNLDARRCEE
LMSHDPDYAIRDLYNSIKKGNYPSWSMYIQVMLNEEAKKCRFNPFDVTKV
WPQKDFPLLPVGKIVLDRNPTNYFTEVEQLAFSPAHMVPGIEPSPDKMLQ
GRLFAYGDSQRHRLGVNYMQIPVNCPYRVNVRNFQRDGAMTVTDNQNGAP
NYFPNSFCGPRESPRALGLQTCCPLSGDVYRFMSGDTEDNFSQVTDFWTY
TLDNCGRKRLVRNLSEHLTEASQFLQERAVKLFTMVHSDFGRLMTEALNT
ARISKF*
BS07429.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9314-PC | 506 | CG9314-PC | 1..506 | 1..506 | 2735 | 100 | Plus |
CG9314-PA | 506 | CG9314-PA | 1..506 | 1..506 | 2735 | 100 | Plus |
Cat-PA | 506 | CG6871-PA | 1..506 | 1..506 | 2025 | 70.4 | Plus |