Clone BS07429 Report

Search the DGRC for BS07429

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG9314-RA
Protein status:BS07429.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07429.3prime Sequence

882 bp (775 high quality bases) assembled on 2006-01-06

> BS07429.3prime
ATGGTCTAGAAAGCTTCTAGAACTTGGAAATCCTGGCCGTGTTAAGGGCC
TCCGTCATCAGTCTTCCGAAATCGGAGTGCACCATGGTGAACAGTTTCAC
TGCCCGCTCCTGAAGGAACTGGCTAGCTTCGGTCAGATGCTCGGACAAGT
TGCGAACTAGCCGCTTGCGGCCGCAGTTATCCAGGGTGTAGGTCCAGAAG
TCGGTGACCTGACTGAAATTGTCCTCGGTGTCACCGCTCATAAATCGATA
GACATCTCCGCTCAACGGACAGCACGTCTGCAGGCCCAAGGCCCGCGGAC
TTTCCCTTGGTCCGCAAAAGGAATTGGGGAAGTAGTTGGGAGCCCCGTTC
TGATTGTCAGTCACTGTCATAGCACCATCCCTCTGGAAGTTGCGAACATT
CACGCGGTACGGACAATTCACCGGTATCTGCATGTAGTTCACGCCCAAAC
GATGGCGCTGCGAATCGCCGTAGGCGAAGAGGCGACCCTGGAGCATCTTA
TCCGGCGATGGCTCGATGCCCGGCACCATGTGGGCCGGACTGAAGGCCAG
CTGCTCCACCTCTGTGAAATAGTTGGTGGGATTGCGATCTAGAACAATCT
TGCCAACTGGAAGCAGGGGGAAGTCCTTCTGGGGCCATACCTTGGTCACA
TCGAACGGATTGAAACGACACTTTTTCGCCTCCTCGTTGAGCATCACCTG
AATGTACATTGACCAACTGGGATAGTTGCCCTTCTTGATCGAGTTGTACA
GATCCCTGATGGCATAGTCCGGATCGTGGGACATCAGCTCCTCGCATCGT
CGGGCGTCCAGGTTCTTGATGCCCTGGTCCGTCTTGAAGTGGAACCTAAC
GTATTGCGTCTCCCACTGGCATTGATCATGCG

BS07429.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9314-PA 1521 CG9314-RA 674..1521 864..17 4240 100 Minus
CG6871-PA 1521 Cat-RA 693..733 845..805 180 97.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG9314-RC 1893 CG9314-RC 778..1644 882..17 4310 99.9 Minus
CG9314-RA 1806 CG9314-RA 778..1644 882..17 4310 99.9 Minus
Cat-RA 1993 CG6871-RA 875..1654 845..66 935 75.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8706596..8707278 699..17 3415 100 Minus
2L 23513712 2L 8706349..8706536 882..696 890 99.5 Minus
3L 28110227 3L 18827354..18827849 561..66 575 74.4 Minus
3L 28110227 3L 18826973..18827248 845..570 330 74.6 Minus
Blast to na_te.dros performed on 2015-02-03 12:07:03 has no hits.

BS07429.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:33 Download gff for BS07429.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9314-PA 655..1521 17..882 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:35 Download gff for BS07429.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9314-PA 655..1521 17..882 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:46:33 Download gff for BS07429.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9314-RA 778..1644 17..882 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:38:30 Download gff for BS07429.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9314-RA 778..1644 17..882 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:38:30 Download gff for BS07429.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8706349..8706534 698..882 99 -> Minus
2L 8706598..8707278 17..697 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:46:33 Download gff for BS07429.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8706349..8706534 698..882 99 -> Minus
arm_2L 8706598..8707278 17..697 100   Minus

BS07429.5prime Sequence

886 bp (852 high quality bases) assembled on 2006-01-06

> BS07429.5prime
GAAGTTATCAGTCGACATGTGTTCACGCGATACGGCGTCAAATCAATTGA
TTGACTATAAGAACAATGACTCCGAGGTGCAAAGGGAGATCACGACATCC
AGTGGAACTCCAGTTGGCGTCAAGGATGCCATACAGACGGTGGGACCAAG
GGGTCCTGCCCTGCTGCAGGATTTCCAGTTCCTCGACGAGGTGATGCACT
TCGACTCGGAGCGGATTCCCGAACGGGTGGCCTACGCCAAGGGAGCCGGC
GCCTTTGGTTACTTCGAGTGCACCCATGACATTTCAAAATTCTGTGCAGC
CTCCATATTCGATAAGGTTAGAAAACGAACTGCCGTCGCGATGAGATTCT
CGGTGGCCTGCGGTGAACAGGGATCTGCGGATACGGTACGTGAACAGCGC
GGATTTGCCGTCAAATTCTACACCGACGACGGCATCTGGGACATTGTGGG
TTGCAACATGCCCGTGCATTATGTCCGGGATCCCATGTTGTTCCCCAGCT
TGGTTCATGCCCAAAAGCGCAATCCCCAGACCCACCTGAAGGATCCGGAC
ATGTTCTGGGACTTCATGACCCTGCGTCCGGAAACCCTGCATGCCCTGCT
CATGTACTTTAGCGATCGGGGAACCCCAGATGGCTATCGCCACCTGCACG
GATACGGTGTGCACACCTACCGCATGATCAATGCCAGTGGGGAGACGCAA
TACGTTAGGTTCCACTTCAAGACGGACCAGGGCATCAAGAACCTGGACGC
CCGACGATGCGAGGAGCTGATGTCCCACGATCCGGACTATGCCATCAGGG
ATCTGTACAACTCGATCAAGAAGGGCAACTATCCCAGTTGGTCAATGTAC
ATTCAGGTGATGCTCANCGAGGAGGCGAAAAAGTGT

BS07429.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG9314-PA 1521 CG9314-RA 1..870 17..886 4331 99.8 Plus
CG6871-PA 1521 Cat-RA 693..733 709..749 180 97.5 Plus
CG6871-PA 1521 Cat-RA 499..566 515..582 165 89.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9314-RC 1893 CG9314-RC 124..993 17..886 4339 99.9 Plus
CG9314-RA 1806 CG9314-RA 124..993 17..886 4339 99.9 Plus
Cat-RA 1993 CG6871-RA 286..1050 120..884 609 73.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:24:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8705695..8706536 17..858 4210 100 Plus
3L 28110227 3L 18826384..18827013 120..749 570 72.7 Plus
Blast to na_te.dros performed on 2015-02-12 12:24:45 has no hits.

BS07429.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:34 Download gff for BS07429.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9314-PA 1..870 17..886 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:36 Download gff for BS07429.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9314-PA 1..870 17..886 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:00:01 Download gff for BS07429.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9314-RA 124..993 17..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:06:48 Download gff for BS07429.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9314-RA 124..993 17..886 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:06:48 Download gff for BS07429.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8705695..8706534 17..856 100 -> Plus
2L 8706598..8706627 857..886 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:00:01 Download gff for BS07429.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8705695..8706534 17..856 100 -> Plus
arm_2L 8706598..8706627 857..886 96   Plus

BS07429.complete Sequence

1553 bp (1553 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635859

> BS07429.complete
GAAGTTATCAGTCGACATGTGTTCACGCGATACGGCGTCAAATCAATTGA
TTGACTATAAGAACAATGACTCCGAGGTGCAAAGGGAGATCACGACATCC
AGTGGAACTCCAGTTGGCGTCAAGGATGCCATACAGACGGTGGGACCAAG
GGGTCCTGCCCTGCTGCAGGATTTCCAGTTCCTCGACGAGGTGATGCACT
TCGACTCGGAGCGGATTCCCGAACGGGTGGCCTACGCCAAGGGAGCCGGC
GCCTTTGGTTACTTCGAGTGCACCCATGACATTTCAAAATTCTGTGCAGC
CTCCATATTCGATAAGGTTAGAAAACGAACTGCCGTCGCGATGAGATTCT
CGGTGGCCTGCGGTGAACAGGGATCTGCGGATACGGTACGTGAACAGCGC
GGATTTGCCGTCAAATTCTACACCGACGACGGCATCTGGGACATTGTGGG
TTGCAACATGCCCGTGCATTATGTCCGGGATCCCATGTTGTTCCCCAGCT
TGGTTCATGCCCAAAAGCGCAATCCCCAGACCCACCTGAAGGATCCGGAC
ATGTTCTGGGACTTCATGACCCTGCGTCCGGAAACCCTGCATGCCCTGCT
CATGTACTTTAGCGATCGGGGAACCCCAGATGGCTATCGCCACCTGCACG
GATACGGTGTGCACACCTACCGCATGATCAATGCCAGTGGGGAGACGCAA
TACGTTAGGTTCCACTTCAAGACGGACCAGGGCATCAAGAACCTGGACGC
CCGACGATGCGAGGAGCTGATGTCCCACGATCCGGACTATGCCATCAGGG
ATCTGTACAACTCGATCAAGAAGGGCAACTATCCCAGTTGGTCAATGTAC
ATTCAGGTGATGCTCAACGAGGAGGCGAAAAAGTGTCGTTTCAATCCGTT
CGATGTGACCAAGGTATGGCCCCAGAAGGACTTCCCCCTGCTTCCAGTTG
GCAAGATTGTTCTAGATCGCAATCCCACCAACTATTTCACAGAGGTGGAG
CAGCTGGCCTTCAGTCCGGCCCACATGGTGCCGGGCATCGAGCCATCGCC
GGATAAGATGCTCCAGGGTCGCCTCTTCGCCTACGGCGATTCGCAGCGCC
ATCGTTTGGGCGTGAACTACATGCAGATACCGGTGAATTGTCCGTACCGC
GTGAATGTTCGCAACTTCCAGAGGGATGGTGCTATGACAGTGACTGACAA
TCAGAACGGGGCTCCCAACTACTTCCCCAATTCCTTTTGCGGACCAAGGG
AAAGTCCGCGGGCCTTGGGCCTGCAGACGTGCTGTCCGTTGAGCGGAGAT
GTCTATCGATTTATGAGCGGTGACACCGAGGACAATTTCAGTCAGGTCAC
CGACTTCTGGACCTACACCCTGGATAACTGCGGCCGCAAGCGGCTAGTTC
GCAACTTGTCCGAGCATCTGACCGAAGCTAGCCAGTTCCTTCAGGAGCGG
GCAGTGAAACTGTTCACCATGGTGCACTCCGATTTCGGAAGACTGATGAC
GGAGGCCCTTAACACGGCCAGGATTTCCAAGTTCTAGAAGCTTTCTAGAC
CAT

BS07429.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9314-RC 1521 CG9314-PC 1..1521 17..1537 7605 100 Plus
CG9314-RA 1521 CG9314-PA 1..1521 17..1537 7605 100 Plus
Cat-RA 1521 CG6871-PA 104..1472 120..1488 1265 72.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:51:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG9314-RC 1893 CG9314-RC 124..1644 17..1537 7605 100 Plus
CG9314-RA 1806 CG9314-RA 124..1644 17..1537 7605 100 Plus
Cat-RA 1993 CG6871-RA 286..1654 120..1488 1265 72.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8705695..8706536 17..858 4210 100 Plus
2L 23513712 2L 8706596..8707278 855..1537 3415 100 Plus
3L 28110227 3L 18826384..18827248 120..984 710 72.1 Plus
3L 28110227 3L 18827354..18827849 993..1488 575 74.4 Plus
Blast to na_te.dros performed on 2014-11-27 06:51:23 has no hits.

BS07429.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:51 Download gff for BS07429.complete
Subject Subject Range Query Range Percent Splice Strand
CG9314-RA 1..1521 17..1537 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:59 Download gff for BS07429.complete
Subject Subject Range Query Range Percent Splice Strand
CG9314-RA 124..1644 17..1537 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:34 Download gff for BS07429.complete
Subject Subject Range Query Range Percent Splice Strand
CG9314-RA 124..1644 17..1537 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:51 Download gff for BS07429.complete
Subject Subject Range Query Range Percent Splice Strand
CG9314-RA 124..1644 17..1537 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:13 Download gff for BS07429.complete
Subject Subject Range Query Range Percent Splice Strand
CG9314-RA 124..1644 17..1537 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:13 Download gff for BS07429.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8705695..8706534 17..856 100 -> Plus
2L 8706598..8707278 857..1537 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:34 Download gff for BS07429.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8705695..8706534 17..856 100 -> Plus
arm_2L 8706598..8707278 857..1537 100   Plus

BS07429.pep Sequence

Translation from 16 to 1536

> BS07429.pep
MCSRDTASNQLIDYKNNDSEVQREITTSSGTPVGVKDAIQTVGPRGPALL
QDFQFLDEVMHFDSERIPERVAYAKGAGAFGYFECTHDISKFCAASIFDK
VRKRTAVAMRFSVACGEQGSADTVREQRGFAVKFYTDDGIWDIVGCNMPV
HYVRDPMLFPSLVHAQKRNPQTHLKDPDMFWDFMTLRPETLHALLMYFSD
RGTPDGYRHLHGYGVHTYRMINASGETQYVRFHFKTDQGIKNLDARRCEE
LMSHDPDYAIRDLYNSIKKGNYPSWSMYIQVMLNEEAKKCRFNPFDVTKV
WPQKDFPLLPVGKIVLDRNPTNYFTEVEQLAFSPAHMVPGIEPSPDKMLQ
GRLFAYGDSQRHRLGVNYMQIPVNCPYRVNVRNFQRDGAMTVTDNQNGAP
NYFPNSFCGPRESPRALGLQTCCPLSGDVYRFMSGDTEDNFSQVTDFWTY
TLDNCGRKRLVRNLSEHLTEASQFLQERAVKLFTMVHSDFGRLMTEALNT
ARISKF*

BS07429.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG9314-PC 506 CG9314-PC 1..506 1..506 2735 100 Plus
CG9314-PA 506 CG9314-PA 1..506 1..506 2735 100 Plus
Cat-PA 506 CG6871-PA 1..506 1..506 2025 70.4 Plus