Clone BS07436 Report

Search the DGRC for BS07436

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:36
Vector:pDNR-Dual
Associated Gene/Transcripth-cup-RA
Protein status:BS07436.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07436.3prime Sequence

801 bp (800 high quality bases) assembled on 2006-01-06

> BS07436.3prime
ATGGTCTAGAAAGCTTCTACTCCTCGGGCTTCTCGGCCAGAGCCTCCTCA
ATAAAGCAAGTGACTTCCAGCTCACTCAGCAGCGAATTGTTGGATGAGCA
CTCCGAATCATCCTCCACGCTGCTCGGCGAAAGGCAGGAGAGGAAGCTAT
CTATGCTGTAGATGCTATTCTCCCGGGTGGCACTCGAATCCAAAGAATCG
TTTGGTCCGATCTGAGTGCTACTTTCGCTGGAGCTCAGTGCTCCCTGGCG
GAACAGCTCATCGGTGGTACTGATCTGCAACTGACGACGCAACTGCTCAT
TTTCATCAGTCAGCTGGCAAATGATCTGCTGGTTCTCGGCACTGCTCCGG
TCCTCGAAGTCGACAGTTAGCTTCATCACATCAACCATACGCTCGATGCG
GGCATCCTGCTCTTCGACCACCTTCGACAAACCGGCCAGGTAGTGCTCCC
TCAGTTGGTAGGTATCGATTAACATGTCCCCTTCGCTGTGCTCACGGTAC
TTCTCCATGATCAGCTCAATGCCGTGTTGGAACTCAACGCCGGTCGCCTT
GAGCTCGATGTTTTCCCGCAGCAACTGCATCTGCTCGTCGTCGTCGTTCT
TCTCCGTCAGATGCTTCAGCAGCTGATCCTCGCGAAACTTGTGGCAGTTG
GCCAACTCCTGATCCACCATTTTAGCATCGATTAGCAGCTCATCGGTCTT
GAACTCCAGTTCGTCCAGGCATTTGGCAAAGTCCTTGTACTCCTTGATAA
GACCGCTTTCGGCTCCGGATGGCACCGAGCTATCCATGTCGACTGATAAC
T

BS07436.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG6130-PA 771 CG6130-RA 1..771 787..17 3855 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
h-cup-RA 1545 CG6130-RA 83..854 787..16 3860 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15382098..15382869 16..787 3860 100 Plus
Blast to na_te.dros performed on 2015-02-12 03:53:25 has no hits.

BS07436.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:47 Download gff for BS07436.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6130-PA 1..771 17..787 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:55 Download gff for BS07436.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6130-PA 1..771 17..787 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:55:27 Download gff for BS07436.3prime
Subject Subject Range Query Range Percent Splice Strand
h-cup-RA 80..857 12..791 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:46:43 Download gff for BS07436.3prime
Subject Subject Range Query Range Percent Splice Strand
h-cup-RA 80..857 12..791 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:46:43 Download gff for BS07436.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15382095..15382872 12..791 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:55:27 Download gff for BS07436.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11207817..11208594 12..791 99   Plus

BS07436.5prime Sequence

801 bp (769 high quality bases) assembled on 2006-01-06

> BS07436.5prime
GAAGTTATCAGTCGACATGGATAGCTCGGTGCCATCCGGAGCCGAAAGCG
GTCTTATCAAGGAGTACAAGGACTTTGCCAAATGCCTGGACGAACTGGAG
TTCAAGACCGATGAGCTGCTAATCGATGCTAAAATGGTGGATCAGGAGTT
GGCCAACTGCCACAAGTTTCGCGAGGATCAGCTGCTGAAGCATCTGACGG
AGAAGAACGACGACGACGAGCAGATGCAGTTGCTGCGGGAAAACATCGAG
CTCAAGGCGACCGGCGTTGAGTTCCAACACGGCATTGAGCTGATCATGGA
GAAGTACCGTGAGCACAGCGAAGGGGACATGTTAATCGATACCTACCAAC
TGAGGGAGCACTACCTGGCCGGTTTGTCGAAGGTGGTCGAAGAGCAGGAT
GCCCGCATCGAGCGTATGGTTGATGTGATGAAGCTAACTGTCGACTTCGA
GGACCGGAGCAGTGCCGAGAACCAGCAGATCATTTGCCAGCTGACTGATG
AAAATGAGCAGTTGCGTCGTCAGTTGCAGATCAGTACCACCGATGAGCTG
TTCCGCCAGGGAGCACTGAGCTCCAGCGAAAGTAGCACTCAGATCGGACC
AAACGATTCTTTGGATTCGAGTGCCACCCGGGAGAATAGCATCTACAGCA
TAGATAGCTTCCTCTCCTGCCTTTCGCCGAGCAGCGTGGAGGATGATTCG
GAGTGCTCATCCAACAATTCGCTGCTGAGTGAGCTGGAAGTCACTTGCTT
TATTGAGGAGGCTCTGGCCGAGAAGCCCGAGGAGTAGAAGCTTTCTAGAC
C

BS07436.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6130-PA 771 CG6130-RA 1..771 17..787 3855 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
h-cup-RA 1545 CG6130-RA 83..854 17..788 3860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15382098..15382869 788..17 3860 100 Minus
Blast to na_te.dros performed on 2015-02-02 10:38:25 has no hits.

BS07436.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:49 Download gff for BS07436.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6130-PA 1..771 17..787 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:56 Download gff for BS07436.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6130-PA 1..771 17..787 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:31:30 Download gff for BS07436.5prime
Subject Subject Range Query Range Percent Splice Strand
h-cup-RA 80..857 13..792 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:40:50 Download gff for BS07436.5prime
Subject Subject Range Query Range Percent Splice Strand
h-cup-RA 80..857 13..792 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:40:50 Download gff for BS07436.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15382095..15382872 13..792 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:31:30 Download gff for BS07436.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11207817..11208594 13..792 99   Minus

BS07436.complete Sequence

803 bp (803 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635861

> BS07436.complete
GAAGTTATCAGTCGACATGGATAGCTCGGTGCCATCCGGAGCCGAAAGCG
GTCTTATCAAGGAGTACAAGGACTTTGCCAAATGCCTGGACGAACTGGAG
TTCAAGACCGATGAGCTGCTAATCGATGCTAAAATGGTGGATCAGGAGTT
GGCCAACTGCCACAAGTTTCGCGAGGATCAGCTGCTGAAGCATCTGACGG
AGAAGAACGACGACGACGAGCAGATGCAGTTGCTGCGGGAAAACATCGAG
CTCAAGGCGACCGGCGTTGAGTTCCAACACGGCATTGAGCTGATCATGGA
GAAGTACCGTGAGCACAGCGAAGGGGACATGTTAATCGATACCTACCAAC
TGAGGGAGCACTACCTGGCCGGTTTGTCGAAGGTGGTCGAAGAGCAGGAT
GCCCGCATCGAGCGTATGGTTGATGTGATGAAGCTAACTGTCGACTTCGA
GGACCGGAGCAGTGCCGAGAACCAGCAGATCATTTGCCAGCTGACTGATG
AAAATGAGCAGTTGCGTCGTCAGTTGCAGATCAGTACCACCGATGAGCTG
TTCCGCCAGGGAGCACTGAGCTCCAGCGAAAGTAGCACTCAGATCGGACC
AAACGATTCTTTGGATTCGAGTGCCACCCGGGAGAATAGCATCTACAGCA
TAGATAGCTTCCTCTCCTGCCTTTCGCCGAGCAGCGTGGAGGATGATTCG
GAGTGCTCATCCAACAATTCGCTGCTGAGTGAGCTGGAAGTCACTTGCTT
TATTGAGGAGGCTCTGGCCGAGAAGCCCGAGGAGTAGAAGCTTTCTAGAC
CAT

BS07436.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
h-cup-RA 771 CG6130-PA 1..771 17..787 3855 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
h-cup-RA 1545 CG6130-RA 83..854 17..788 3860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15382098..15382869 788..17 3860 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:50:19 has no hits.

BS07436.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:17 Download gff for BS07436.complete
Subject Subject Range Query Range Percent Splice Strand
CG6130-RA 1..771 17..787 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:35 Download gff for BS07436.complete
Subject Subject Range Query Range Percent Splice Strand
CG6130-RA 80..857 13..792 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:59 Download gff for BS07436.complete
Subject Subject Range Query Range Percent Splice Strand
h-cup-RA 83..853 17..787 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:18 Download gff for BS07436.complete
Subject Subject Range Query Range Percent Splice Strand
CG6130-RA 80..857 13..792 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:43 Download gff for BS07436.complete
Subject Subject Range Query Range Percent Splice Strand
h-cup-RA 83..853 17..787 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:43 Download gff for BS07436.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15382099..15382869 17..787 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:59 Download gff for BS07436.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11207821..11208591 17..787 100   Minus

BS07436.pep Sequence

Translation from 16 to 786

> BS07436.pep
MDSSVPSGAESGLIKEYKDFAKCLDELEFKTDELLIDAKMVDQELANCHK
FREDQLLKHLTEKNDDDEQMQLLRENIELKATGVEFQHGIELIMEKYREH
SEGDMLIDTYQLREHYLAGLSKVVEEQDARIERMVDVMKLTVDFEDRSSA
ENQQIICQLTDENEQLRRQLQISTTDELFRQGALSSSESSTQIGPNDSLD
SSATRENSIYSIDSFLSCLSPSSVEDDSECSSNNSLLSELEVTCFIEEAL
AEKPEE*

BS07436.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
h-cup-PA 256 CG6130-PA 1..256 1..256 1290 100 Plus
Fgop2-PB 315 CG10158-PB 79..225 71..207 172 32.4 Plus
Fgop2-PA 315 CG10158-PA 79..225 71..207 172 32.4 Plus