Clone Sequence Records
BS07436.3prime Sequence
801 bp (800 high quality bases) assembled on 2006-01-06
> BS07436.3prime
ATGGTCTAGAAAGCTTCTACTCCTCGGGCTTCTCGGCCAGAGCCTCCTCA
ATAAAGCAAGTGACTTCCAGCTCACTCAGCAGCGAATTGTTGGATGAGCA
CTCCGAATCATCCTCCACGCTGCTCGGCGAAAGGCAGGAGAGGAAGCTAT
CTATGCTGTAGATGCTATTCTCCCGGGTGGCACTCGAATCCAAAGAATCG
TTTGGTCCGATCTGAGTGCTACTTTCGCTGGAGCTCAGTGCTCCCTGGCG
GAACAGCTCATCGGTGGTACTGATCTGCAACTGACGACGCAACTGCTCAT
TTTCATCAGTCAGCTGGCAAATGATCTGCTGGTTCTCGGCACTGCTCCGG
TCCTCGAAGTCGACAGTTAGCTTCATCACATCAACCATACGCTCGATGCG
GGCATCCTGCTCTTCGACCACCTTCGACAAACCGGCCAGGTAGTGCTCCC
TCAGTTGGTAGGTATCGATTAACATGTCCCCTTCGCTGTGCTCACGGTAC
TTCTCCATGATCAGCTCAATGCCGTGTTGGAACTCAACGCCGGTCGCCTT
GAGCTCGATGTTTTCCCGCAGCAACTGCATCTGCTCGTCGTCGTCGTTCT
TCTCCGTCAGATGCTTCAGCAGCTGATCCTCGCGAAACTTGTGGCAGTTG
GCCAACTCCTGATCCACCATTTTAGCATCGATTAGCAGCTCATCGGTCTT
GAACTCCAGTTCGTCCAGGCATTTGGCAAAGTCCTTGTACTCCTTGATAA
GACCGCTTTCGGCTCCGGATGGCACCGAGCTATCCATGTCGACTGATAAC
T
BS07436.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6130-PA | 771 | CG6130-RA | 1..771 | 787..17 | 3855 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:53:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
h-cup-RA | 1545 | CG6130-RA | 83..854 | 787..16 | 3860 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:53:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15382098..15382869 | 16..787 | 3860 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:53:25 has no hits.
BS07436.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:47 Download gff for
BS07436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6130-PA | 1..771 | 17..787 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:55 Download gff for
BS07436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6130-PA | 1..771 | 17..787 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:55:27 Download gff for
BS07436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
h-cup-RA | 80..857 | 12..791 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:46:43 Download gff for
BS07436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
h-cup-RA | 80..857 | 12..791 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:46:43 Download gff for
BS07436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15382095..15382872 | 12..791 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:55:27 Download gff for
BS07436.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11207817..11208594 | 12..791 | 99 | | Plus |
BS07436.5prime Sequence
801 bp (769 high quality bases) assembled on 2006-01-06
> BS07436.5prime
GAAGTTATCAGTCGACATGGATAGCTCGGTGCCATCCGGAGCCGAAAGCG
GTCTTATCAAGGAGTACAAGGACTTTGCCAAATGCCTGGACGAACTGGAG
TTCAAGACCGATGAGCTGCTAATCGATGCTAAAATGGTGGATCAGGAGTT
GGCCAACTGCCACAAGTTTCGCGAGGATCAGCTGCTGAAGCATCTGACGG
AGAAGAACGACGACGACGAGCAGATGCAGTTGCTGCGGGAAAACATCGAG
CTCAAGGCGACCGGCGTTGAGTTCCAACACGGCATTGAGCTGATCATGGA
GAAGTACCGTGAGCACAGCGAAGGGGACATGTTAATCGATACCTACCAAC
TGAGGGAGCACTACCTGGCCGGTTTGTCGAAGGTGGTCGAAGAGCAGGAT
GCCCGCATCGAGCGTATGGTTGATGTGATGAAGCTAACTGTCGACTTCGA
GGACCGGAGCAGTGCCGAGAACCAGCAGATCATTTGCCAGCTGACTGATG
AAAATGAGCAGTTGCGTCGTCAGTTGCAGATCAGTACCACCGATGAGCTG
TTCCGCCAGGGAGCACTGAGCTCCAGCGAAAGTAGCACTCAGATCGGACC
AAACGATTCTTTGGATTCGAGTGCCACCCGGGAGAATAGCATCTACAGCA
TAGATAGCTTCCTCTCCTGCCTTTCGCCGAGCAGCGTGGAGGATGATTCG
GAGTGCTCATCCAACAATTCGCTGCTGAGTGAGCTGGAAGTCACTTGCTT
TATTGAGGAGGCTCTGGCCGAGAAGCCCGAGGAGTAGAAGCTTTCTAGAC
C
BS07436.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6130-PA | 771 | CG6130-RA | 1..771 | 17..787 | 3855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:38:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
h-cup-RA | 1545 | CG6130-RA | 83..854 | 17..788 | 3860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:38:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15382098..15382869 | 788..17 | 3860 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 10:38:25 has no hits.
BS07436.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:49 Download gff for
BS07436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6130-PA | 1..771 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:56 Download gff for
BS07436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6130-PA | 1..771 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:31:30 Download gff for
BS07436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
h-cup-RA | 80..857 | 13..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:40:50 Download gff for
BS07436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
h-cup-RA | 80..857 | 13..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:40:50 Download gff for
BS07436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15382095..15382872 | 13..792 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:31:30 Download gff for
BS07436.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11207817..11208594 | 13..792 | 99 | | Minus |
BS07436.complete Sequence
803 bp (803 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635861
> BS07436.complete
GAAGTTATCAGTCGACATGGATAGCTCGGTGCCATCCGGAGCCGAAAGCG
GTCTTATCAAGGAGTACAAGGACTTTGCCAAATGCCTGGACGAACTGGAG
TTCAAGACCGATGAGCTGCTAATCGATGCTAAAATGGTGGATCAGGAGTT
GGCCAACTGCCACAAGTTTCGCGAGGATCAGCTGCTGAAGCATCTGACGG
AGAAGAACGACGACGACGAGCAGATGCAGTTGCTGCGGGAAAACATCGAG
CTCAAGGCGACCGGCGTTGAGTTCCAACACGGCATTGAGCTGATCATGGA
GAAGTACCGTGAGCACAGCGAAGGGGACATGTTAATCGATACCTACCAAC
TGAGGGAGCACTACCTGGCCGGTTTGTCGAAGGTGGTCGAAGAGCAGGAT
GCCCGCATCGAGCGTATGGTTGATGTGATGAAGCTAACTGTCGACTTCGA
GGACCGGAGCAGTGCCGAGAACCAGCAGATCATTTGCCAGCTGACTGATG
AAAATGAGCAGTTGCGTCGTCAGTTGCAGATCAGTACCACCGATGAGCTG
TTCCGCCAGGGAGCACTGAGCTCCAGCGAAAGTAGCACTCAGATCGGACC
AAACGATTCTTTGGATTCGAGTGCCACCCGGGAGAATAGCATCTACAGCA
TAGATAGCTTCCTCTCCTGCCTTTCGCCGAGCAGCGTGGAGGATGATTCG
GAGTGCTCATCCAACAATTCGCTGCTGAGTGAGCTGGAAGTCACTTGCTT
TATTGAGGAGGCTCTGGCCGAGAAGCCCGAGGAGTAGAAGCTTTCTAGAC
CAT
BS07436.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:50:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
h-cup-RA | 771 | CG6130-PA | 1..771 | 17..787 | 3855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:50:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
h-cup-RA | 1545 | CG6130-RA | 83..854 | 17..788 | 3860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:50:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15382098..15382869 | 788..17 | 3860 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:50:19 has no hits.
BS07436.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:17 Download gff for
BS07436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6130-RA | 1..771 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:35 Download gff for
BS07436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6130-RA | 80..857 | 13..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:59 Download gff for
BS07436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
h-cup-RA | 83..853 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:18 Download gff for
BS07436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6130-RA | 80..857 | 13..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:43 Download gff for
BS07436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
h-cup-RA | 83..853 | 17..787 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:43 Download gff for
BS07436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15382099..15382869 | 17..787 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:59 Download gff for
BS07436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11207821..11208591 | 17..787 | 100 | | Minus |
BS07436.pep Sequence
Translation from 16 to 786
> BS07436.pep
MDSSVPSGAESGLIKEYKDFAKCLDELEFKTDELLIDAKMVDQELANCHK
FREDQLLKHLTEKNDDDEQMQLLRENIELKATGVEFQHGIELIMEKYREH
SEGDMLIDTYQLREHYLAGLSKVVEEQDARIERMVDVMKLTVDFEDRSSA
ENQQIICQLTDENEQLRRQLQISTTDELFRQGALSSSESSTQIGPNDSLD
SSATRENSIYSIDSFLSCLSPSSVEDDSECSSNNSLLSELEVTCFIEEAL
AEKPEE*
BS07436.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
h-cup-PA | 256 | CG6130-PA | 1..256 | 1..256 | 1290 | 100 | Plus |
Fgop2-PB | 315 | CG10158-PB | 79..225 | 71..207 | 172 | 32.4 | Plus |
Fgop2-PA | 315 | CG10158-PA | 79..225 | 71..207 | 172 | 32.4 | Plus |