Clone BS07438 Report

Search the DGRC for BS07438

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptAMPdeam-RC
Protein status:BS07438.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07438.3prime Sequence

948 bp (821 high quality bases) assembled on 2006-01-06

> BS07438.3prime
ATGGTCTAGAAAGCTTCTATGTGGCGTTCATGTCTGCAATGGAGCACGTC
TGGTTCACCTTGAAGATGTTGGACAGCTCGTCCAGCAGTGTCTCATAGCG
ATAGGCCACACGGATCTCTGGCACATTGGTGCGCGTGATGTCGTTGCCCA
TGATACCGTCCTCGTAATAGATGGGTCCCAGCCACTGCTGTTTGATGGCA
TGTGGGAATCCGCTCATCATCACACTGTTCCTGGCCAGCTCGCACATGTC
GCATGAGCTGAGCTTCCACACCTGTGCCGCAATGCTGTACTCCTCCATGA
GGGGTTCCTTGGTGAAGTGGAATTGCAAGGGATCATCCGTGGAGAGGGAA
ATGATGAGGCCACGGGCCAAATACTCTGGCAGCGGATTGCGATGATAGTT
GAGGAACAGGGAGTTGTTCGACAGCGGCGACATGGCGATGCCAATCTGGG
TCAGATAATACAGATACTGCAGCACGGGCACTTTGCGCAACAGGAGGCCG
TGGGAGATGTTCTCGGCCATGAGGAAGCCGCAAACCAGATGCTGCACGGG
TCCAGCCTCGCCGCAATGGGGCCGCAGCACAAAGGTGTTCATATTGCGAG
ATTGTCTAAACTTGTTCAGCACCGTCATGTTGGCGTACATATAGTAGATA
TAGTAGGCATAGGGCGGATTCTCCTCGTAGGTCCACTCCTCCGGACGTGG
CACATCGTTGTCGAAGAGCGGATTCTCCGGCTTGGACTCATCGTCCACCG
AATCGAATCCGATCACGTACTGCAGAAAGCGATGCAACTCGGGATGCTTA
CTGGGTCGGGCTGTCGCCTCGAAGAGCGGCAGGAATATGTTGTTCAAGAT
CTCCTGGAATGACTTCATCATCTTGTTCGACTTGAAGATGTCGAAGAGAC
GGGGTATCTGGATCAGCCAGCGAATGTTCGAGCTGTACACATCATTGT

BS07438.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG32626-PA 2325 CG32626-RA 1394..2325 948..17 4660 100 Minus
CG32626-PB 1959 CG32626-RB 1028..1959 948..17 4660 100 Minus
CG32626-PD 2334 CG32626-RD 1403..2334 948..17 4660 100 Minus
CG32626-PC 2124 CG32626-RC 1193..2124 948..17 4660 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:16:24
Subject Length Description Subject Range Query Range Score Percent Strand
AMPdeam-RH 2656 CG32626-RH 1553..2484 948..17 4660 100 Minus
AMPdeam-RG 2611 CG32626-RG 1508..2439 948..17 4660 100 Minus
AMPdeam-RF 2814 CG32626-RF 1711..2642 948..17 4660 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:16:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13831702..13832047 603..948 1730 100 Plus
X 23542271 X 13831339..13831634 307..602 1480 100 Plus
X 23542271 X 13830921..13831100 17..196 900 100 Plus
X 23542271 X 13831168..13831280 197..309 565 100 Plus
Blast to na_te.dros performed on 2015-01-31 16:16:20 has no hits.

BS07438.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:49 Download gff for BS07438.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32626-PA 1394..2325 17..948 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:57 Download gff for BS07438.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32626-PC 1193..2124 17..948 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:22:18 Download gff for BS07438.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32626-RF 1711..2645 12..948 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:41:07 Download gff for BS07438.3prime
Subject Subject Range Query Range Percent Splice Strand
AMPdeam-RF 1711..2645 12..948 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:41:07 Download gff for BS07438.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13830918..13831100 12..196 98 <- Plus
X 13831168..13831278 197..307 100 <- Plus
X 13831340..13831634 308..602 100 <- Plus
X 13831702..13832047 603..948 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:22:18 Download gff for BS07438.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13724951..13725133 12..196 98 <- Plus
arm_X 13725201..13725311 197..307 100 <- Plus
arm_X 13725373..13725667 308..602 100 <- Plus
arm_X 13725735..13726080 603..948 100   Plus

BS07438.5prime Sequence

957 bp (835 high quality bases) assembled on 2006-01-06

> BS07438.5prime
GAAGTTATCAGTCGACATGTCCTTCGCGGATGATAGCTATAGCTTTGGTC
GCTGCTACGAGTATCAGCCCGATGATTGCAAATGGCAGGCTACAGGACCT
AGACCAGTGGCCACAGCCGCCGTATTGGCCACAAACAGGGAATCATCCAG
CAGCACCGAGGGCCGCGAGTCCGCCGTTACTATGGAGAGAAACGATGCGG
ACATTAACTTTCAACGGGTCTCAATTTCGGGTGAGGACACCAGTGGCGTA
CCGCTCGAGGATTTGGAGCGGGCCTCGACCCTGCTGATCGAGGCACTGCG
CCTGCGTAGCCACTACATGGCCATGTCGGATCAATCGTTTCCCTCGACCA
CGGCTCGATTCCTCAAGACAGTGAAGCTCAAGGATCGCATCAACAATCTG
CCCGTCAAGGAGGTGTCGGAATCTGCAGATGTCCATTTGAGACATTCGCC
AATGAAGATTACGAATCCGTGGAACGTCGAGTTTCCCAATGACGAAGATT
TCAAGATTAAGCCCCTCAACGGAGTGTTTCACATTTACGAGAATGATGAC
GAAAGCAGTGAGATCAAATACGAATATCCAGATATGAGCCAATTCGTAAA
CGACATGCAGGTCATGTGCAATATGATTGCCGATGGGCCATTGAAATCCT
TCTGCTATCGACGTCTCTGTTATCTGTCGTCCAAGTATCAGATGCACGTG
CTCCTCAACGAGCTGCGTGAGCTGGCTGCCCAGAAGGCGGTGCCGCATCG
CGATTTCTACAACACCCGCAAGGTGGACACCCACATCCATGCCGCATCGT
GCATGAACCAAAAGCATCTGCTGCGCTTCATTAAAAAGACGCTGAAGAAC
AACGCCCACGAGGTGGTCACCGTCACCCATGGCCAGCAAATGACACTGGC
CCAGGTGTTCCAGTCGATGAACCTGACCACCTACAACCTGACCGTCGACA
TGTTGGA

BS07438.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG32626-PC 2124 CG32626-RC 1..941 17..957 4630 99.6 Plus
CG32626-PA 2325 CG32626-RA 270..1142 85..957 4290 99.6 Plus
CG32626-PD 2334 CG32626-RD 279..1151 85..957 4290 99.6 Plus
CG32626-PB 1959 CG32626-RB 1..776 182..957 3805 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:14:48
Subject Length Description Subject Range Query Range Score Percent Strand
AMPdeam-RC 3216 CG32626-RC 921..1861 17..957 4660 99.7 Plus
AMPdeam-RJ 2620 CG32626-RJ 393..1265 85..957 4320 99.7 Plus
AMPdeam-RG 2611 CG32626-RG 393..1256 85..957 4175 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13834815..13835150 419..84 1680 100 Minus
X 23542271 X 13832359..13832673 957..643 1530 99 Minus
X 23542271 X 13832903..13833032 548..419 650 100 Minus
X 23542271 X 13832745..13832840 643..548 480 100 Minus
X 23542271 X 13835377..13835445 85..17 345 100 Minus
Blast to na_te.dros performed on 2015-02-11 13:14:47 has no hits.

BS07438.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:12:50 Download gff for BS07438.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32626-PC 1..940 17..956 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:02:59 Download gff for BS07438.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32626-PC 1..940 17..956 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:31:17 Download gff for BS07438.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32626-RC 913..1860 9..956 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:37:41 Download gff for BS07438.5prime
Subject Subject Range Query Range Percent Splice Strand
AMPdeam-RC 913..1860 9..956 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:37:41 Download gff for BS07438.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13832360..13832673 643..956 99 <- Minus
X 13832746..13832840 548..642 100 <- Minus
X 13832904..13833031 420..547 100 <- Minus
X 13834815..13835149 85..419 100 <- Minus
X 13835378..13835449 9..84 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:31:17 Download gff for BS07438.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13726393..13726706 643..956 99 <- Minus
arm_X 13726779..13726873 548..642 100 <- Minus
arm_X 13726937..13727064 420..547 100 <- Minus
arm_X 13728848..13729182 85..419 100 <- Minus
arm_X 13729411..13729482 9..84 94   Minus

BS07438.complete Sequence

2156 bp assembled on 2008-01-02

GenBank Submission: FJ635862

> BS07438.complete
GAAGTTATCAGTCGACATGTCCTTCGCGGATGATAGCTATAGCTTTGGTC
GCTGCTACGAGTATCAGCCCGATGATTGCAAATGGCAGGCTACAGGACCT
AGACCAGTGGCCACAGCCGCCGTATTGGCCACAAACAGGGAATCATCCAG
CAGCACCGAGGGCCGCGAGTCCGCCGTTACTATGGAGAGAAACGATGCGG
ACATTAACTTTCAACGGGTCTCAATTTCGGGTGAGGACACCAGTGGCGTA
CCGCTCGAGGATTTGGAGCGGGCCTCGACCCTGCTGATCGAGGCACTGCG
CCTGCGTAGCCACTACATGGCCATGTCGGATCAATCGTTTCCCTCGACCA
CGGCTCGATTCCTCAAGACAGTGAAGCTCAAGGATCGCATCAACAATCTG
CCCGTCAAGGAGGTGTCGGAATCTGCAGATGTCCATTTGAGACATTCGCC
AATGAAGATTACGAATCCGTGGAACGTCGAGTTTCCCAATGACGAAGATT
TCAAGATTAAGCCCCTCAACGGAGTGTTTCACATTTACGAGAATGATGAC
GAAAGCAGTGAGATCAAATACGAATATCCAGATATGAGCCAATTCGTAAA
CGACATGCAGGTCATGTGCAATATGATTGCCGATGGGCCATTGAAATCCT
TCTGCTATCGACGTCTCTGTTATCTGTCGTCCAAGTATCAGATGCACGTG
CTCCTCAACGAGCTGCGTGAGCTGGCTGCCCAGAAGGCGGTGCCGCATCG
CGATTTCTACAACACCCGCAAGGTGGACACCCACATCCATGCCGCATCGT
GCATGAACCAAAAGCATCTGCTGCGCTTCATTAAAAAGACGCTGAAGAAC
AACGCCAACGAGGTGGTCACCGTCACCAATGGCCAGCAAATGACACTGGC
CCAGGTGTTCCAGTCGATGAACCTGACCACCTACGACCTGACCGTCGACA
TGTTGGACGTCCATGCCGATCGCAACACGTTCCATCGCTTCGACAAGTTT
AACTCCAAGTACAATCCCATCGGGGAGTCGCGGCTCAGGGAAGTCTTCCT
GAAGACGGACAACTATCTGAATGGCAAATACTTTGCACAGATCATAAAGG
AAGTGGCCTTCGATCTGGAGGAGTCCAAGTACCAGAACGCCGAGCTGCGT
CTCTCCATCTATGGCAAGTCGCCGGATGAGTGGTACAAACTGGCCAAGTG
GGCCATCGACAATGATGTGTACAGCTCGAACATTCGCTGGCTGATCCAGA
TACCCCGTCTCTTCGACATCTTCAAGTCGAACAAGATGATGAAGTCATTC
CAGGAGATCTTGAACAACATATTCCTGCCGCTCTTCGAGGCGACAGCCCG
ACCCAGTAAGCATCCCGAGTTGCATCGCTTTCTGCAGTACGTGATCGGAT
TCGATTCGGTGGACGATGAGTCCAAGCCGGAGAATCCGCTCTTCGACAAC
GATGTGCCACGTCCGGAGGAGTGGACCTACGAGGAGAATCCGCCCTATGC
CTACTATATCTACTATATGTACGCCAACATGACGGTGCTGAACAAGTTTA
GACAATCTCGCAATATGAACACCTTTGTGCTGCGGCCCCATTGCGGCGAG
GCTGGACCCGTGCAGCATCTGGTTTGCGGCTTCCTCATGGCCGAGAACAT
CTCCCACGGCCTCCTGTTGCGCAAAGTGCCCGTGCTGCAGTATCTGTATT
ATCTGACCCAGATTGGCATCGCCATGTCGCCGCTGTCGAACAACTCCCTG
TTCCTCAACTATCATCGCAATCCGCTGCCAGAGTATTTGGCCCGTGGCCT
CATCATTTCCCTCTCCACGGATGATCCCTTGCAATTCCACTTCACCAAGG
AACCCCTCATGGAGGAGTACAGCATTGCGGCACAGGTGTGGAAGCTCAGC
TCATGCGACATGTGCGAGCTGGCCAGGAACAGTGTGATGATGAGCGGATT
CCCACATGCCATCAAACAGCAGTGGCTGGGACCCATCTATTACGAGGACG
GTATCATGGGCAACGACATCACGCGCACCAATGTGCCAGAGATCCGTGTG
GCCTATCGCTATGAGACACTGCTGGACGAGCTGTCCAACATCTTCAAGGT
GAACCAGACGTGCTCCATTGCAGACATGAACGCCACATAGAAGCTTTCTA
GACCAT

BS07438.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
AMPdeam-RC 2124 CG32626-PC 1..2124 17..2140 10620 100 Plus
AMPdeam-RJ 2334 CG32626-PJ 279..2334 85..2140 10280 100 Plus
AMPdeam-RG 2325 CG32626-PG 279..2325 85..2140 10110 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
AMPdeam-RC 3216 CG32626-RC 921..3044 17..2140 10620 100 Plus
AMPdeam-RJ 2620 CG32626-RJ 393..2448 85..2140 10280 100 Plus
AMPdeam-RG 2611 CG32626-RG 393..2439 85..2140 10110 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13832216..13832673 1100..643 2290 100 Minus
X 23542271 X 13831702..13832158 1554..1098 2285 100 Minus
X 23542271 X 13834815..13835150 419..84 1680 100 Minus
X 23542271 X 13831339..13831634 1850..1555 1480 100 Minus
X 23542271 X 13830921..13831100 2140..1961 900 100 Minus
X 23542271 X 13832903..13833032 548..419 650 100 Minus
X 23542271 X 13831168..13831280 1960..1848 565 100 Minus
X 23542271 X 13832745..13832840 643..548 480 100 Minus
X 23542271 X 13835377..13835445 85..17 345 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:50:57 has no hits.

BS07438.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:28 Download gff for BS07438.complete
Subject Subject Range Query Range Percent Splice Strand
CG32626-RC 1..2124 17..2140 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:06 Download gff for BS07438.complete
Subject Subject Range Query Range Percent Splice Strand
CG32626-RC 921..3044 17..2140 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:36:08 Download gff for BS07438.complete
Subject Subject Range Query Range Percent Splice Strand
CG32626-RC 921..3044 17..2140 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:28 Download gff for BS07438.complete
Subject Subject Range Query Range Percent Splice Strand
CG32626-RC 913..3047 9..2145 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:11:28 Download gff for BS07438.complete
Subject Subject Range Query Range Percent Splice Strand
AMPdeam-RC 921..3044 17..2140 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:11:28 Download gff for BS07438.complete
Subject Subject Range Query Range Percent Splice Strand
X 13830921..13831100 1961..2140 100 <- Minus
X 13831168..13831278 1850..1960 100 <- Minus
X 13831340..13831634 1555..1849 100 <- Minus
X 13831702..13832156 1100..1554 100 <- Minus
X 13832217..13832673 643..1099 100 <- Minus
X 13832746..13832840 548..642 100 <- Minus
X 13832904..13833031 420..547 100 <- Minus
X 13834815..13835149 85..419 100 <- Minus
X 13835378..13835445 17..84 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:36:08 Download gff for BS07438.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13724954..13725133 1961..2140 100 <- Minus
arm_X 13725201..13725311 1850..1960 100 <- Minus
arm_X 13725373..13725667 1555..1849 100 <- Minus
arm_X 13725735..13726189 1100..1554 100 <- Minus
arm_X 13726250..13726706 643..1099 100 <- Minus
arm_X 13726779..13726873 548..642 100 <- Minus
arm_X 13726937..13727064 420..547 100 <- Minus
arm_X 13728848..13729182 85..419 100 <- Minus
arm_X 13729411..13729478 17..84 100   Minus

BS07438.pep Sequence

Translation from 16 to 2139

> BS07438.pep
MSFADDSYSFGRCYEYQPDDCKWQATGPRPVATAAVLATNRESSSSTEGR
ESAVTMERNDADINFQRVSISGEDTSGVPLEDLERASTLLIEALRLRSHY
MAMSDQSFPSTTARFLKTVKLKDRINNLPVKEVSESADVHLRHSPMKITN
PWNVEFPNDEDFKIKPLNGVFHIYENDDESSEIKYEYPDMSQFVNDMQVM
CNMIADGPLKSFCYRRLCYLSSKYQMHVLLNELRELAAQKAVPHRDFYNT
RKVDTHIHAASCMNQKHLLRFIKKTLKNNANEVVTVTNGQQMTLAQVFQS
MNLTTYDLTVDMLDVHADRNTFHRFDKFNSKYNPIGESRLREVFLKTDNY
LNGKYFAQIIKEVAFDLEESKYQNAELRLSIYGKSPDEWYKLAKWAIDND
VYSSNIRWLIQIPRLFDIFKSNKMMKSFQEILNNIFLPLFEATARPSKHP
ELHRFLQYVIGFDSVDDESKPENPLFDNDVPRPEEWTYEENPPYAYYIYY
MYANMTVLNKFRQSRNMNTFVLRPHCGEAGPVQHLVCGFLMAENISHGLL
LRKVPVLQYLYYLTQIGIAMSPLSNNSLFLNYHRNPLPEYLARGLIISLS
TDDPLQFHFTKEPLMEEYSIAAQVWKLSSCDMCELARNSVMMSGFPHAIK
QQWLGPIYYEDGIMGNDITRTNVPEIRVAYRYETLLDELSNIFKVNQTCS
IADMNAT*

BS07438.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
AMPdeam-PC 707 CG32626-PC 1..707 1..707 3742 100 Plus
AMPdeam-PJ 777 CG32626-PJ 94..777 24..707 3602 100 Plus
AMPdeam-PH 789 CG32626-PH 94..789 24..707 3579 98.3 Plus
AMPdeam-PG 774 CG32626-PG 94..774 24..707 3575 99.6 Plus
AMPdeam-PE 771 CG32626-PE 91..771 24..707 3575 99.6 Plus