Clone Sequence Records
BS07443.3prime Sequence
935 bp (896 high quality bases) assembled on 2006-01-06
> BS07443.3prime
ATGGTCTAGAAAGCTTTCAGTTTTCGTTCACCGTGTCCTCCTCGTGCACC
GAGGGGTGTGCGCTTTTTTTCGAGGCGCACATGCTGAAGTACTTGGCCTT
GACCTCCTCGATAGAATAGTCCACCTCGATGGCGGGATAGCTGGACTTAT
TTTGTGTGAGGTTTTGGCCACGCAACATCTGCCAGTTTTCCAGCTTGTGC
GCATACTTCAAATACTTCTCAAAGTTATGCAATGTTTCGTAGACGTGGCA
CAGACCCAAATAATCGTACTCCAGGCCAGAGTATGAGTTCCCAAACAGAC
GCAGGCTTATATCAATGCTGCGCATGTAAAGCTGTTCGGCATCACGGTAT
TTCTTCATCTGGTAATTGTACAGCGAGGCCAAATGCCCAATGGACAGGCC
AACCTCGTAGTCAAAGTGACCCAGCAGTTCCGACTTAATTTTGATCGCCT
TTTTGTGCATTCGTTCCGCCTCTTCGAAACGATTCATCGTTTGGTATAAC
CGCCCCAGATTTCCATAGTGCTTCGCCGTCTGTACATTCACCTCGCCAAA
CACTTGCAGCGAGAGAAGCAGGGCGAAATTGTGCAGCTCCTCGGATTGAA
GCAGCAGATCCTCCTCATCTATGCCATCAGCCATCTTGTCCAGCGCAATC
TCCTCCAGCAGGAGTGCCTTTACGCGCTTCGCCGATGCCAACATTAGATG
ATTGCTTGGCACCAGATGCTGCATTATATTCACAGCCTTGTCCACGTGAT
CCTGGGCACAGCTAAAGTCACCGGTGCTGTACTCGTGAACGTAGTAGGCA
TACGACAAATCCTCATGGGCAATGGCCACGTGAAAGTTCATATTCCCAAA
AATACCACGACGCACGGCCAGTGCTTCTTTGTATATATTTACAGACTGGA
ACACCGAGTCCACGTTGAGTAGGAAAAATCCGTAG
BS07443.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10695-PA | 2061 | Pat1-RA | 1143..2061 | 935..17 | 4595 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:20:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pat1-RC | 3659 | CG10695-RC | 1511..2429 | 935..17 | 4595 | 100 | Minus |
| Pat1-RA | 3716 | CG10695-RA | 1511..2429 | 935..17 | 4595 | 100 | Minus |
| Pat1-RB | 3389 | CG10695-RB | 1511..2426 | 935..17 | 4540 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:20:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6594613..6595242 | 935..306 | 3150 | 100 | Minus |
| X | 23542271 | X | 6595314..6595471 | 306..149 | 790 | 100 | Minus |
| X | 23542271 | X | 6595536..6595667 | 148..17 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:20:20 has no hits.
BS07443.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:00 Download gff for
BS07443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pat1-PA | 1143..2061 | 17..935 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:03:12 Download gff for
BS07443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10695-PA | 1143..2061 | 17..935 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:41:49 Download gff for
BS07443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pat1-RA | 1511..2429 | 17..935 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:12 Download gff for
BS07443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pat1-RA | 1511..2429 | 17..935 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:12 Download gff for
BS07443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6594613..6595241 | 307..935 | 100 | -> | Minus |
| X | 6595314..6595471 | 149..306 | 100 | -> | Minus |
| X | 6595536..6595667 | 17..148 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:41:49 Download gff for
BS07443.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6488646..6489274 | 307..935 | 100 | -> | Minus |
| arm_X | 6489347..6489504 | 149..306 | 100 | -> | Minus |
| arm_X | 6489569..6489700 | 17..148 | 100 | | Minus |
BS07443.5prime Sequence
932 bp (813 high quality bases) assembled on 2006-01-06
> BS07443.5prime
GAAGTTATCAGTCGACATGGCTGGCCAACAGCTCGTGGTCTTGATCCCCA
AAATAAATCCCAACTCCCCGAAGACCCTATACGACCTGTCGCTGCAGGCC
CTCATCGGGAGTATGAACACCAAGATACCGGCGCTGGACAGGATCAGTCG
ACTGGCTGAGCTGCCACGCAACTTGCTCATCGATGTTTACGAAATGATGT
CACAGCAGGAGTCCTTGAAGGACACGCTGCTGGAGGAGCTGGCCCAGCTT
GAGGTATTCGCTCGACTCGTTCGCTATCCATTTGCTCGCAGTCAATTGCT
GCGCATAATGGCCTCACTAATGGCCAGCCAAAAGATGCTGGCCAAAAGAC
TCAGCGAGAACTATGTGTCGCGCTATGAGGTGGTGGCCGGTCACGAAGAA
GAGGAACTGGAGTCGAGTATGGATACAGTTGAGGATCGCTCAACGGAGTT
CAGTTCACTGTATACCTACGATTCCGAATCTACAAATGCAGACAGCATCA
GTGATTTTAATGACGAATTCAGTGCTGATATCGGAAGCATAGTAGGTCTC
CCACACCGGAGAGCAACACAGGAGGAACTCGATGCGATCAATGATTCTGG
CCTCGAGGAGCTGTCCGCCGTTGAGCTGCAGGTCATAGATCTGGGCCTGC
GCCTCGGATCGTTCCTCTCGGAGGCTGGATGGATGCAGGAGAGCATTACC
GTGCTGGCATGCCTTAATGTAAGACTGAAGGATCTGCCGACCCACAAACA
CTGGTTGCAGTTTCGACTCGACTGCCTGCAGCGCCTTTTGTATGCCGAAT
CGGCCCATTGCAACTTCAAGGAGGCAGAGAAAACCTACGCGGAATTGATG
GGTCTGAACAAATGGCTCAATAAGAGCGTGCCAAACCAGCTGGTGGCCAT
AACCTACAGTCAGATTTCGGCCATGTACTTTG
BS07443.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10695-PA | 2061 | Pat1-RA | 1..916 | 17..932 | 4580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:07:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pat1-RC | 3659 | CG10695-RC | 365..1284 | 13..932 | 4585 | 99.9 | Plus |
| Pat1-RB | 3389 | CG10695-RB | 365..1284 | 13..932 | 4585 | 99.9 | Plus |
| Pat1-RA | 3716 | CG10695-RA | 365..1284 | 13..932 | 4585 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:07:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6593360..6593947 | 196..783 | 2940 | 100 | Plus |
| X | 23542271 | X | 6591580..6591763 | 13..196 | 905 | 99.5 | Plus |
| X | 23542271 | X | 6594088..6594237 | 783..932 | 750 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:07:25 has no hits.
BS07443.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:01 Download gff for
BS07443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pat1-PA | 1..916 | 17..932 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:03:13 Download gff for
BS07443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10695-PA | 1..916 | 17..932 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:57:12 Download gff for
BS07443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pat1-RA | 362..1284 | 9..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:56:04 Download gff for
BS07443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pat1-RA | 362..1284 | 9..932 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:56:04 Download gff for
BS07443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6591577..6591763 | 9..196 | 98 | -> | Plus |
| X | 6593361..6593947 | 197..783 | 100 | -> | Plus |
| X | 6594089..6594237 | 784..932 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:57:12 Download gff for
BS07443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6485610..6485796 | 9..196 | 98 | -> | Plus |
| arm_X | 6487394..6487980 | 197..783 | 100 | -> | Plus |
| arm_X | 6488122..6488270 | 784..932 | 100 | | Plus |
BS07443.complete Sequence
2093 bp assembled on 2008-01-03
GenBank Submission: FJ635863
> BS07443.complete
GAAGTTATCAGTCGACATGGCTGGCCAACAGCTCGTGGTCTTGATCCCCA
AAATAAATCCCAACTCCCCGAAGACCCTATACGACCTGTCGCTGCAGGCC
CTCATCGGGAGTATGAACACCAAGATACCGGCGCTGGACAGGATCAGTCG
ACTGGCTGAGCTGCCACGCAACTTGCTCATCGATGTTTACGAAATGATGT
CACAGCAGGAGTCCTTGAAGGACACGCTGCTGGAGGAGCTGGCCCAGCTT
GAGGTATTCGCTCGACTCGTTCGCTATCCATTTGCTCGCAGTCAATTGCT
GCGCATAATGGCCTCACTAATGGCCAGCCAAAAGATGCTGGCCAAAAGAC
TCAGCGAGAACTATGTGTCGCGCTATGAGGTGGTGGCCGGTCACGAAGAA
GAGGAACTGGAGTCGAGTATGGATACAGTTGAGGATCGCTCAACGGAGTT
CAGTTCACTGTATACCTACGATTCCGAATCTACAAATGCAGACAGCATCA
GTGATTTTAATGACGAATTCAGTGCTGATATCGGAAGCATAGTAGGTCTC
CCACACCGGAGAGCAACACAGGAGGAACTCGATGCGATCAATGATTCTGG
CCTCGAGGAGCTGTCCGCCGTTGAGCTGCAGGTCATAGATCTGGGCCTGC
GCCTCGGATCGTTCCTCTCGGAGGCTGGATGGATGCAGGAGAGCATTACC
GTGCTGGCATGCCTTAATGTAAGACTGAAGGATCTGCCGACCCACAAACA
CTGGTTGCAGTTTCGACTCGACTGCCTGCAGCGCCTTTTGTATGCCGAAT
CGGCCCATTGCAACTTCAAGGAGGCAGAGAAAACCTACGCGGAATTGATG
GGTCTGAACAAATGGCTCAATAAGAGCGTGCCAAACCAGCTGGTGGCCAT
AACCTACAGTCAGATTTCGGCCATGTACTTTGCCCGCAATGAGTACAAGA
ACAGTCATTTGTGGAGCGGTCTCGCCATGCGATTTTTAAAAGGATATGCG
AATCCACGCACCATCATCGATGTTCTGCGCCAGGCGGCGAAGGCCTGTGT
CGTTAAGCGGGACTTTGCCCGGGCCAATCTGCTCATCTGCCAGGCGGTGC
GACGCGCACGCGAGTACTTTGGCCCAACGCACCAGAAATACGGCGATGCA
CTGCTGGACTACGGATTTTTCCTACTCAACGTGGACTCGGTGTTCCAGTC
TGTAAATATATACAAAGAAGCACTGGCCGTGCGTCGTGGTATTTTTGGGA
ATATGAACTTTCACGTGGCCATTGCCCATGAGGATTTGTCGTATGCCTAC
TACGTTCACGAGTACAGCACCGGTGACTTTAGCTGTGCCCAGGATCACGT
GGACAAGGCTGTGAATATAATGCAGCATCTGGTGCCAAGCAATCATCTAA
TGTTGGCATCGGCGAAGCGCGTAAAGGCACTCCTGCTGGAGGAGATTGCG
CTGGACAAGATGGCTGATGGCATAGATGAGGAGGATCTGCTGCTTCAATC
CGAGGAGCTGCACAATTTCGCCCTGCTTCTCTCGCTGCAAGTGTTTGGCG
AGGTGAATGTACAGACGGCGAAGCACTATGGAAATCTGGGGCGGTTATAC
CAAACGATGAATCGTTTCGAAGAGGCGGAACGAATGCACAAAAAGGCGAT
CAAAATTAAGTCGGAACTGCTGGGTCACTTTGACTACGAGGTTGGCCTGT
CCATTGGGCATTTGGCCTCGCTGTACAATTACCAGATGAAGAAATACCGT
GATGCCGAACAGCTTTACATGCGCAGCATTGATATAAGCCTGCGTCTGTT
TGGGAACTCATACTCTGGCCTGGAGTACGATTATTTGGGTCTGTGCCACG
TCTACGAAACATTGCATAACTTTGAGAAGTATTTGAAGTATGCGCACAAG
CTGGAAAACTGGCAGATGTTGCGTGGCCAAAACCTCACACAAAATAAGTC
CAGCTATCCCGCCATCGAGGTGGACTATTCTATCGAGGAGGTCAAGGCCA
AGTACTTCAGCATGTGCGCCTCGAAAAAAAGCGCACACCCCTCGGTGCAC
GAGGAGGACACGGTGAACGAAAACTGAAAGCTTTCTAGACCAT
BS07443.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:28:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pat1-RC | 2061 | CG10695-PC | 1..2061 | 17..2077 | 10305 | 100 | Plus |
| Pat1-RA | 2061 | CG10695-PA | 1..2061 | 17..2077 | 10305 | 100 | Plus |
| Pat1-RB | 2058 | CG10695-PB | 1..2058 | 17..2077 | 10225 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:28:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pat1-RC | 3659 | CG10695-RC | 365..2429 | 13..2077 | 10310 | 100 | Plus |
| Pat1-RA | 3716 | CG10695-RA | 365..2429 | 13..2077 | 10310 | 100 | Plus |
| Pat1-RB | 3389 | CG10695-RB | 365..2426 | 13..2077 | 10230 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:28:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6594564..6595242 | 1110..1788 | 3395 | 100 | Plus |
| X | 23542271 | X | 6593360..6593947 | 196..783 | 2940 | 100 | Plus |
| X | 23542271 | X | 6594088..6594313 | 783..1008 | 1130 | 100 | Plus |
| X | 23542271 | X | 6591580..6591763 | 13..196 | 905 | 99.5 | Plus |
| X | 23542271 | X | 6595314..6595471 | 1788..1945 | 790 | 100 | Plus |
| X | 23542271 | X | 6595536..6595667 | 1946..2077 | 660 | 100 | Plus |
| X | 23542271 | X | 6594383..6594485 | 1008..1110 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:28:34 has no hits.
BS07443.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:29 Download gff for
BS07443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pat1-RA | 1..2061 | 17..2077 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:50 Download gff for
BS07443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pat1-RA | 367..2426 | 17..2076 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:21 Download gff for
BS07443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pat1-RA | 369..2428 | 17..2076 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:29 Download gff for
BS07443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pat1-RA | 360..2427 | 9..2077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:32 Download gff for
BS07443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pat1-RA | 369..2428 | 17..2076 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:32 Download gff for
BS07443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6591584..6591763 | 17..196 | 100 | -> | Plus |
| X | 6593361..6593947 | 197..783 | 100 | -> | Plus |
| X | 6594089..6594313 | 784..1008 | 100 | -> | Plus |
| X | 6594384..6594485 | 1009..1110 | 100 | -> | Plus |
| X | 6594565..6595241 | 1111..1787 | 100 | -> | Plus |
| X | 6595314..6595471 | 1788..1945 | 100 | -> | Plus |
| X | 6595536..6595666 | 1946..2076 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:21 Download gff for
BS07443.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6485617..6485796 | 17..196 | 100 | -> | Plus |
| arm_X | 6487394..6487980 | 197..783 | 100 | -> | Plus |
| arm_X | 6488122..6488346 | 784..1008 | 100 | -> | Plus |
| arm_X | 6488417..6488518 | 1009..1110 | 100 | -> | Plus |
| arm_X | 6488598..6489274 | 1111..1787 | 100 | -> | Plus |
| arm_X | 6489347..6489504 | 1788..1945 | 100 | -> | Plus |
| arm_X | 6489569..6489699 | 1946..2076 | 100 | | Plus |
BS07443.pep Sequence
Translation from 16 to 2076
> BS07443.pep
MAGQQLVVLIPKINPNSPKTLYDLSLQALIGSMNTKIPALDRISRLAELP
RNLLIDVYEMMSQQESLKDTLLEELAQLEVFARLVRYPFARSQLLRIMAS
LMASQKMLAKRLSENYVSRYEVVAGHEEEELESSMDTVEDRSTEFSSLYT
YDSESTNADSISDFNDEFSADIGSIVGLPHRRATQEELDAINDSGLEELS
AVELQVIDLGLRLGSFLSEAGWMQESITVLACLNVRLKDLPTHKHWLQFR
LDCLQRLLYAESAHCNFKEAEKTYAELMGLNKWLNKSVPNQLVAITYSQI
SAMYFARNEYKNSHLWSGLAMRFLKGYANPRTIIDVLRQAAKACVVKRDF
ARANLLICQAVRRAREYFGPTHQKYGDALLDYGFFLLNVDSVFQSVNIYK
EALAVRRGIFGNMNFHVAIAHEDLSYAYYVHEYSTGDFSCAQDHVDKAVN
IMQHLVPSNHLMLASAKRVKALLLEEIALDKMADGIDEEDLLLQSEELHN
FALLLSLQVFGEVNVQTAKHYGNLGRLYQTMNRFEEAERMHKKAIKIKSE
LLGHFDYEVGLSIGHLASLYNYQMKKYRDAEQLYMRSIDISLRLFGNSYS
GLEYDYLGLCHVYETLHNFEKYLKYAHKLENWQMLRGQNLTQNKSSYPAI
EVDYSIEEVKAKYFSMCASKKSAHPSVHEEDTVNEN*
BS07443.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:18:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pat1-PC | 686 | CG10695-PC | 1..686 | 1..686 | 3512 | 100 | Plus |
| Pat1-PA | 686 | CG10695-PA | 1..686 | 1..686 | 3512 | 100 | Plus |
| Pat1-PB | 685 | CG10695-PB | 1..685 | 1..686 | 3495 | 99.9 | Plus |
