Clone BS07447 Report

Search the DGRC for BS07447

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG16959-RA
Protein status:BS07447.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07447.3prime Sequence

876 bp (828 high quality bases) assembled on 2006-01-06

> BS07447.3prime
ATGGTCTAGAAAGCTTTTAGGTGGTCCCACCAAGGTGCAGATCATTGAGA
AACTTCGAGTTGAGTCGCTCGTTGGTTAAATACCTCGCCAGGCTGACACT
TGGAGCGCTGCAGTTGCTCATGCCGCGTTGATCCGACTCCGAGGGCGTAT
AACCCGGTCGGCAGACGCACTTGGCCCGACTGGCGTGGACCAAAATTGAG
GTGCCATTCGTGGTTTGCGATTTCAGTGGCTCTAGCCACTGACCCGCGCC
GCAGGGTCCTCGGCTATACAGCTTGTGGCACTGCCCATTGATCTCCACCA
TTCCGGGCGTGGACTCGCATATATTCTGTTCCTTATCCGCTCCATCTCCC
GTGCACTGCTGATCCAGATTGGTGAGGACACCGGAACAACCGCACATTCC
ATTGTAGGAGATGCCATCGATGGATGGCCTGGCGGTGAAGTCGAAGATCA
CCACCTGATGTAGGGCACACGGGCCTTGAGATCCAATCCTGTAGCAAGAA
TCTTCCGCTGGGAAGTACAGGCGATTCTTGCCACAGAAGTTGCGCACACA
GCTGGTTCCGTTGACCAGGAACTCATTGGGTCCACAGGGACCCCTTGTGT
ACAGGCGATAGCAGATGCCATCGCTCCAGGGCACATAGCCCTCCTTGCAC
TGGCACTGGGCACGAGGCAAAAGCTGCAGGGTGCTGCCCGTTGTCTCCTG
GACCTCGTCGGGTATGCGAAAGATGTGACCAGGTGGACAGGGGCCAGGAG
TGTCCAGCTCATAGCACATTTGATGCGGAGCATGATAGTGCGGCAAGTGC
CGCTGGCAGTCGCATCGACCGCCGGGCAAGAAGATGTGACCCGGCGTCGA
GCAGGGTCCTTTGGTGTAGTGCTCAT

BS07447.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG16959-PA 1512 CG16959-RA 653..1512 876..17 4300 100 Minus
CG16959-PB 1512 CG16959-RB 653..1512 876..17 4300 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:07:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG16959-RB 2092 CG16959-RB 898..1759 876..15 4310 100 Minus
CG16959-RA 2292 CG16959-RA 1098..1959 876..15 4310 100 Minus
CG16959-RE 1866 CG16959-RE 921..1715 876..82 3975 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:07:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15120211..15120950 15..754 3700 100 Plus
3L 28110227 3L 15121064..15121186 754..876 615 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:07:17 has no hits.

BS07447.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:08 Download gff for BS07447.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16959-PB 653..1512 17..876 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:03:23 Download gff for BS07447.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16959-PB 653..1512 17..876 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:52:19 Download gff for BS07447.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16959-RA 1098..1959 15..876 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:39:17 Download gff for BS07447.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16959-RA 1098..1959 15..876 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:39:17 Download gff for BS07447.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15120211..15120949 15..753 100 <- Plus
3L 15121064..15121186 754..876 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:52:19 Download gff for BS07447.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15113311..15114049 15..753 100 <- Plus
arm_3L 15114164..15114286 754..876 100   Plus

BS07447.5prime Sequence

848 bp (830 high quality bases) assembled on 2006-01-06

> BS07447.5prime
GAAGTTATCAGTCGACATGAGGCGTCGCAAAGTGCTCATCTGCTGGGCTG
CTCTGCAGGCGGGCAGCTCCATCCTCACCTGCCTGCTCCTCCTACTGACC
ACCGGCCAGAATCCGCAGCAGGTGGCAGCCGGAATAGTGCCGCCTCCGTG
GAGTGATCCCGCACAGAATCCGTGCGCCAGCATGTCCGGTGGCTGGCAGC
TGCTGTACTGGGCACCTCTGAAGAAGTGCTTCAAGATCTTCACCCTCGGC
TATCCATGTCCGGCCACCATGGAGCTCAGTCCCACCGCAGTGAGTGCCAA
GCGTAAGGATGCACCTGCAGCCGAGTGCCGCTGCCCTCCGGGAACTGCAC
TCAGTCCGCTTCACGATAATGTGTGCTACAAGCTATACGAACGGGGACCC
TGCCAACCCGAGGAGTACTTCCAACCCGTGCCGGATCAGGTCAAGAGAAC
CGCAACCGGCAACCGTTGGGGTACGTGCAAGCGACCGCTGCATTGCCCGG
AGGACATGCTCTTCTGGCCGAGGGACAACAAGTGCTATGCGAGGCATGCA
AAGGGTCCATGCAGCCGGGGTAAACTCCTCGTTCGCAACGAGGAGGGACT
GGCCGAGTGCCGTTGCGAGGATGTGGGCGACTTGGCCTCGTTCTACTATC
CGGCAGAGGAGTCTTGCTATGAGCACTACACCAAAGGACCCTGCTCGACG
CCGGGTCACATCTTCTTGCCCGGCGGTCGATGCGACTGCCAGCGGCACTT
GCCGCACTATCATGCTCCGCATCAAATGTGCTATGAGCTGGACACTCCTG
GCCCCTGTCCACCTGGTCACATCTTTCGCATACCCGACGAGGTCCAGG

BS07447.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG16959-PA 1512 CG16959-RA 1..832 17..848 4160 100 Plus
CG16959-PB 1512 CG16959-RB 1..832 17..848 4160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG16959-RE 1866 CG16959-RE 268..1100 16..848 4165 100 Plus
CG16959-RD 1843 CG16959-RD 245..1077 16..848 4165 100 Plus
CG16959-RC 2043 CG16959-RC 445..1277 16..848 4165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:17:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15122624..15123055 447..16 2160 100 Minus
3L 28110227 3L 15121064..15121409 791..446 1730 100 Minus
3L 28110227 3L 15120893..15120950 848..791 290 100 Minus
Blast to na_te.dros performed on 2015-02-11 13:17:18 has no hits.

BS07447.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:09 Download gff for BS07447.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16959-PB 1..832 17..848 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:03:25 Download gff for BS07447.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16959-PB 1..832 17..848 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:31:55 Download gff for BS07447.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16959-RB 241..1077 12..848 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:42:58 Download gff for BS07447.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16959-RC 441..1277 12..848 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:42:58 Download gff for BS07447.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15120893..15120949 792..848 100 <- Minus
3L 15121064..15121407 448..791 100 <- Minus
3L 15122624..15123059 12..447 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:31:55 Download gff for BS07447.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15113993..15114049 792..848 100 <- Minus
arm_3L 15114164..15114507 448..791 100 <- Minus
arm_3L 15115724..15116159 12..447 99   Minus

BS07447.complete Sequence

1544 bp (1544 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635864

> BS07447.complete
GAAGTTATCAGTCGACATGAGGCGTCGCAAAGTGCTCATCTGCTGGGCTG
CTCTGCAGGCGGGCAGCTCCATCCTCACCTGCCTGCTCCTCCTACTGACC
ACCGGCCAGAATCCGCAGCAGGTGGCAGCCGGAATAGTGCCGCCTCCGTG
GAGTGATCCCGCACAGAATCCGTGCGCCAGCATGTCCGGTGGCTGGCAGC
TGCTGTACTGGGCACCTCTGAAGAAGTGCTTCAAGATCTTCACCCTCGGC
TATCCATGTCCGGCCACCATGGAGCTCAGTCCCACCGCAGTGAGTGCCAA
GCGTAAGGATGCACCTGCAGCCGAGTGCCGCTGCCCTCCGGGAACTGCAC
TCAGTCCGCTTCACGATAATGTGTGCTACAAGCTATACGAACGGGGACCC
TGCCAACCCGAGGAGTACTTCCAACCCGTGCCGGATCAGGTCAAGAGAAC
CGCAACCGGCAACCGTTGGGGTACGTGCAAGCGACCGCTGCATTGCCCGG
AGGACATGCTCTTCTGGCCGAGGGACAACAAGTGCTATGCGAGGCATGCA
AAGGGTCCATGCAGCCGGGGTAAACTCCTCGTTCGCAACGAGGAGGGACT
GGCCGAGTGCCGTTGCGAGGATGTGGGCGACTTGGCCTCGTTCTACTATC
CGGCAGAGGAGTCTTGCTATGAGCACTACACCAAAGGACCCTGCTCGACG
CCGGGTCACATCTTCTTGCCCGGCGGTCGATGCGACTGCCAGCGGCACTT
GCCGCACTATCATGCTCCGCATCAAATGTGCTATGAGCTGGACACTCCTG
GCCCCTGTCCACCTGGTCACATCTTTCGCATACCCGACGAGGTCCAGGAG
ACAACGGGCAGCACCCTGCAGCTTTTGCCTCGTGCCCAGTGCCAGTGCAA
GGAGGGCTATGTGCCCTGGAGCGATGGCATCTGCTATCGCCTGTACACAA
GGGGTCCCTGTGGACCCAATGAGTTCCTGGTCAACGGAACCAGCTGTGTG
CGCAACTTCTGTGGCAAGAATCGCCTGTACTTCCCAGCGGAAGATTCTTG
CTACAGGATTGGATCTCAAGGCCCGTGTGCCCTACATCAGGTGGTGATCT
TCGACTTCACCGCCAGGCCATCCATCGATGGCATCTCCTACAATGGAATG
TGCGGTTGTTCCGGTGTCCTCACCAATCTGGATCAGCAGTGCACGGGAGA
TGGAGCGGATAAGGAACAGAATATATGCGAGTCCACGCCCGGAATGGTGG
AGATCAATGGGCAGTGCCACAAGCTGTATAGCCGAGGACCCTGCGGCGCG
GGTCAGTGGCTAGAGCCACTGAAATCGCAAACCACGAATGGCACCTCAAT
TTTGGTCCACGCCAGTCGGGCCAAGTGCGTCTGCCGACCGGGTTATACGC
CCTCGGAGTCGGATCAACGCGGCATGAGCAACTGCAGCGCTCCAAGTGTC
AGCCTGGCGAGGTATTTAACCAACGAGCGACTCAACTCGAAGTTTCTCAA
TGATCTGCACCTTGGTGGGACCACCTAAAAGCTTTCTAGACCAT

BS07447.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG16959-RB 1512 CG16959-PB 1..1512 17..1528 7560 100 Plus
CG16959-RA 1512 CG16959-PA 1..1512 17..1528 7560 100 Plus
CG16959-RE 1470 CG16959-PE 1..1447 17..1463 7235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG16959-RB 2092 CG16959-RB 245..1759 16..1530 7575 100 Plus
CG16959-RA 2292 CG16959-RA 445..1959 16..1530 7575 100 Plus
CG16959-RE 1866 CG16959-RE 268..1715 16..1463 7240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15120211..15120950 1530..791 3700 100 Minus
3L 28110227 3L 15122624..15123055 447..16 2160 100 Minus
3L 28110227 3L 15121064..15121409 791..446 1730 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:54:44 has no hits.

BS07447.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:54 Download gff for BS07447.complete
Subject Subject Range Query Range Percent Splice Strand
CG16959-RB 1..1512 17..1528 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:01 Download gff for BS07447.complete
Subject Subject Range Query Range Percent Splice Strand
CG16959-RB 238..1756 12..1530 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:16 Download gff for BS07447.complete
Subject Subject Range Query Range Percent Splice Strand
CG16959-RA 446..1955 17..1526 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:54 Download gff for BS07447.complete
Subject Subject Range Query Range Percent Splice Strand
CG16959-RB 238..1756 12..1530 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:44 Download gff for BS07447.complete
Subject Subject Range Query Range Percent Splice Strand
CG16959-RA 446..1955 17..1526 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:44 Download gff for BS07447.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15120215..15120949 792..1526 100 <- Minus
3L 15121064..15121407 448..791 100 <- Minus
3L 15122624..15123054 17..447 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:16 Download gff for BS07447.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15113315..15114049 792..1526 100 <- Minus
arm_3L 15114164..15114507 448..791 100 <- Minus
arm_3L 15115724..15116154 17..447 100   Minus

BS07447.pep Sequence

Translation from 16 to 1527

> BS07447.pep
MRRRKVLICWAALQAGSSILTCLLLLLTTGQNPQQVAAGIVPPPWSDPAQ
NPCASMSGGWQLLYWAPLKKCFKIFTLGYPCPATMELSPTAVSAKRKDAP
AAECRCPPGTALSPLHDNVCYKLYERGPCQPEEYFQPVPDQVKRTATGNR
WGTCKRPLHCPEDMLFWPRDNKCYARHAKGPCSRGKLLVRNEEGLAECRC
EDVGDLASFYYPAEESCYEHYTKGPCSTPGHIFLPGGRCDCQRHLPHYHA
PHQMCYELDTPGPCPPGHIFRIPDEVQETTGSTLQLLPRAQCQCKEGYVP
WSDGICYRLYTRGPCGPNEFLVNGTSCVRNFCGKNRLYFPAEDSCYRIGS
QGPCALHQVVIFDFTARPSIDGISYNGMCGCSGVLTNLDQQCTGDGADKE
QNICESTPGMVEINGQCHKLYSRGPCGAGQWLEPLKSQTTNGTSILVHAS
RAKCVCRPGYTPSESDQRGMSNCSAPSVSLARYLTNERLNSKFLNDLHLG
GTT*

BS07447.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG16959-PB 503 CG16959-PB 1..503 1..503 2845 100 Plus
CG16959-PA 503 CG16959-PA 1..503 1..503 2845 100 Plus
CG16959-PE 489 CG16959-PE 1..483 1..483 2736 99.8 Plus
CG16959-PD 489 CG16959-PD 1..483 1..483 2736 99.8 Plus
CG16959-PC 489 CG16959-PC 1..483 1..483 2736 99.8 Plus