Clone Sequence Records
BS07447.3prime Sequence
876 bp (828 high quality bases) assembled on 2006-01-06
> BS07447.3prime
ATGGTCTAGAAAGCTTTTAGGTGGTCCCACCAAGGTGCAGATCATTGAGA
AACTTCGAGTTGAGTCGCTCGTTGGTTAAATACCTCGCCAGGCTGACACT
TGGAGCGCTGCAGTTGCTCATGCCGCGTTGATCCGACTCCGAGGGCGTAT
AACCCGGTCGGCAGACGCACTTGGCCCGACTGGCGTGGACCAAAATTGAG
GTGCCATTCGTGGTTTGCGATTTCAGTGGCTCTAGCCACTGACCCGCGCC
GCAGGGTCCTCGGCTATACAGCTTGTGGCACTGCCCATTGATCTCCACCA
TTCCGGGCGTGGACTCGCATATATTCTGTTCCTTATCCGCTCCATCTCCC
GTGCACTGCTGATCCAGATTGGTGAGGACACCGGAACAACCGCACATTCC
ATTGTAGGAGATGCCATCGATGGATGGCCTGGCGGTGAAGTCGAAGATCA
CCACCTGATGTAGGGCACACGGGCCTTGAGATCCAATCCTGTAGCAAGAA
TCTTCCGCTGGGAAGTACAGGCGATTCTTGCCACAGAAGTTGCGCACACA
GCTGGTTCCGTTGACCAGGAACTCATTGGGTCCACAGGGACCCCTTGTGT
ACAGGCGATAGCAGATGCCATCGCTCCAGGGCACATAGCCCTCCTTGCAC
TGGCACTGGGCACGAGGCAAAAGCTGCAGGGTGCTGCCCGTTGTCTCCTG
GACCTCGTCGGGTATGCGAAAGATGTGACCAGGTGGACAGGGGCCAGGAG
TGTCCAGCTCATAGCACATTTGATGCGGAGCATGATAGTGCGGCAAGTGC
CGCTGGCAGTCGCATCGACCGCCGGGCAAGAAGATGTGACCCGGCGTCGA
GCAGGGTCCTTTGGTGTAGTGCTCAT
BS07447.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16959-PA | 1512 | CG16959-RA | 653..1512 | 876..17 | 4300 | 100 | Minus |
CG16959-PB | 1512 | CG16959-RB | 653..1512 | 876..17 | 4300 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:07:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16959-RB | 2092 | CG16959-RB | 898..1759 | 876..15 | 4310 | 100 | Minus |
CG16959-RA | 2292 | CG16959-RA | 1098..1959 | 876..15 | 4310 | 100 | Minus |
CG16959-RE | 1866 | CG16959-RE | 921..1715 | 876..82 | 3975 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:07:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15120211..15120950 | 15..754 | 3700 | 100 | Plus |
3L | 28110227 | 3L | 15121064..15121186 | 754..876 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:07:17 has no hits.
BS07447.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:08 Download gff for
BS07447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16959-PB | 653..1512 | 17..876 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:03:23 Download gff for
BS07447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16959-PB | 653..1512 | 17..876 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:52:19 Download gff for
BS07447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16959-RA | 1098..1959 | 15..876 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:39:17 Download gff for
BS07447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16959-RA | 1098..1959 | 15..876 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:39:17 Download gff for
BS07447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15120211..15120949 | 15..753 | 100 | <- | Plus |
3L | 15121064..15121186 | 754..876 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:52:19 Download gff for
BS07447.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15113311..15114049 | 15..753 | 100 | <- | Plus |
arm_3L | 15114164..15114286 | 754..876 | 100 | | Plus |
BS07447.5prime Sequence
848 bp (830 high quality bases) assembled on 2006-01-06
> BS07447.5prime
GAAGTTATCAGTCGACATGAGGCGTCGCAAAGTGCTCATCTGCTGGGCTG
CTCTGCAGGCGGGCAGCTCCATCCTCACCTGCCTGCTCCTCCTACTGACC
ACCGGCCAGAATCCGCAGCAGGTGGCAGCCGGAATAGTGCCGCCTCCGTG
GAGTGATCCCGCACAGAATCCGTGCGCCAGCATGTCCGGTGGCTGGCAGC
TGCTGTACTGGGCACCTCTGAAGAAGTGCTTCAAGATCTTCACCCTCGGC
TATCCATGTCCGGCCACCATGGAGCTCAGTCCCACCGCAGTGAGTGCCAA
GCGTAAGGATGCACCTGCAGCCGAGTGCCGCTGCCCTCCGGGAACTGCAC
TCAGTCCGCTTCACGATAATGTGTGCTACAAGCTATACGAACGGGGACCC
TGCCAACCCGAGGAGTACTTCCAACCCGTGCCGGATCAGGTCAAGAGAAC
CGCAACCGGCAACCGTTGGGGTACGTGCAAGCGACCGCTGCATTGCCCGG
AGGACATGCTCTTCTGGCCGAGGGACAACAAGTGCTATGCGAGGCATGCA
AAGGGTCCATGCAGCCGGGGTAAACTCCTCGTTCGCAACGAGGAGGGACT
GGCCGAGTGCCGTTGCGAGGATGTGGGCGACTTGGCCTCGTTCTACTATC
CGGCAGAGGAGTCTTGCTATGAGCACTACACCAAAGGACCCTGCTCGACG
CCGGGTCACATCTTCTTGCCCGGCGGTCGATGCGACTGCCAGCGGCACTT
GCCGCACTATCATGCTCCGCATCAAATGTGCTATGAGCTGGACACTCCTG
GCCCCTGTCCACCTGGTCACATCTTTCGCATACCCGACGAGGTCCAGG
BS07447.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16959-PA | 1512 | CG16959-RA | 1..832 | 17..848 | 4160 | 100 | Plus |
CG16959-PB | 1512 | CG16959-RB | 1..832 | 17..848 | 4160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:17:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16959-RE | 1866 | CG16959-RE | 268..1100 | 16..848 | 4165 | 100 | Plus |
CG16959-RD | 1843 | CG16959-RD | 245..1077 | 16..848 | 4165 | 100 | Plus |
CG16959-RC | 2043 | CG16959-RC | 445..1277 | 16..848 | 4165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:17:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15122624..15123055 | 447..16 | 2160 | 100 | Minus |
3L | 28110227 | 3L | 15121064..15121409 | 791..446 | 1730 | 100 | Minus |
3L | 28110227 | 3L | 15120893..15120950 | 848..791 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 13:17:18 has no hits.
BS07447.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:09 Download gff for
BS07447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16959-PB | 1..832 | 17..848 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:03:25 Download gff for
BS07447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16959-PB | 1..832 | 17..848 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:31:55 Download gff for
BS07447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16959-RB | 241..1077 | 12..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:42:58 Download gff for
BS07447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16959-RC | 441..1277 | 12..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:42:58 Download gff for
BS07447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15120893..15120949 | 792..848 | 100 | <- | Minus |
3L | 15121064..15121407 | 448..791 | 100 | <- | Minus |
3L | 15122624..15123059 | 12..447 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:31:55 Download gff for
BS07447.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15113993..15114049 | 792..848 | 100 | <- | Minus |
arm_3L | 15114164..15114507 | 448..791 | 100 | <- | Minus |
arm_3L | 15115724..15116159 | 12..447 | 99 | | Minus |
BS07447.complete Sequence
1544 bp (1544 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635864
> BS07447.complete
GAAGTTATCAGTCGACATGAGGCGTCGCAAAGTGCTCATCTGCTGGGCTG
CTCTGCAGGCGGGCAGCTCCATCCTCACCTGCCTGCTCCTCCTACTGACC
ACCGGCCAGAATCCGCAGCAGGTGGCAGCCGGAATAGTGCCGCCTCCGTG
GAGTGATCCCGCACAGAATCCGTGCGCCAGCATGTCCGGTGGCTGGCAGC
TGCTGTACTGGGCACCTCTGAAGAAGTGCTTCAAGATCTTCACCCTCGGC
TATCCATGTCCGGCCACCATGGAGCTCAGTCCCACCGCAGTGAGTGCCAA
GCGTAAGGATGCACCTGCAGCCGAGTGCCGCTGCCCTCCGGGAACTGCAC
TCAGTCCGCTTCACGATAATGTGTGCTACAAGCTATACGAACGGGGACCC
TGCCAACCCGAGGAGTACTTCCAACCCGTGCCGGATCAGGTCAAGAGAAC
CGCAACCGGCAACCGTTGGGGTACGTGCAAGCGACCGCTGCATTGCCCGG
AGGACATGCTCTTCTGGCCGAGGGACAACAAGTGCTATGCGAGGCATGCA
AAGGGTCCATGCAGCCGGGGTAAACTCCTCGTTCGCAACGAGGAGGGACT
GGCCGAGTGCCGTTGCGAGGATGTGGGCGACTTGGCCTCGTTCTACTATC
CGGCAGAGGAGTCTTGCTATGAGCACTACACCAAAGGACCCTGCTCGACG
CCGGGTCACATCTTCTTGCCCGGCGGTCGATGCGACTGCCAGCGGCACTT
GCCGCACTATCATGCTCCGCATCAAATGTGCTATGAGCTGGACACTCCTG
GCCCCTGTCCACCTGGTCACATCTTTCGCATACCCGACGAGGTCCAGGAG
ACAACGGGCAGCACCCTGCAGCTTTTGCCTCGTGCCCAGTGCCAGTGCAA
GGAGGGCTATGTGCCCTGGAGCGATGGCATCTGCTATCGCCTGTACACAA
GGGGTCCCTGTGGACCCAATGAGTTCCTGGTCAACGGAACCAGCTGTGTG
CGCAACTTCTGTGGCAAGAATCGCCTGTACTTCCCAGCGGAAGATTCTTG
CTACAGGATTGGATCTCAAGGCCCGTGTGCCCTACATCAGGTGGTGATCT
TCGACTTCACCGCCAGGCCATCCATCGATGGCATCTCCTACAATGGAATG
TGCGGTTGTTCCGGTGTCCTCACCAATCTGGATCAGCAGTGCACGGGAGA
TGGAGCGGATAAGGAACAGAATATATGCGAGTCCACGCCCGGAATGGTGG
AGATCAATGGGCAGTGCCACAAGCTGTATAGCCGAGGACCCTGCGGCGCG
GGTCAGTGGCTAGAGCCACTGAAATCGCAAACCACGAATGGCACCTCAAT
TTTGGTCCACGCCAGTCGGGCCAAGTGCGTCTGCCGACCGGGTTATACGC
CCTCGGAGTCGGATCAACGCGGCATGAGCAACTGCAGCGCTCCAAGTGTC
AGCCTGGCGAGGTATTTAACCAACGAGCGACTCAACTCGAAGTTTCTCAA
TGATCTGCACCTTGGTGGGACCACCTAAAAGCTTTCTAGACCAT
BS07447.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:54:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16959-RB | 1512 | CG16959-PB | 1..1512 | 17..1528 | 7560 | 100 | Plus |
CG16959-RA | 1512 | CG16959-PA | 1..1512 | 17..1528 | 7560 | 100 | Plus |
CG16959-RE | 1470 | CG16959-PE | 1..1447 | 17..1463 | 7235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:54:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16959-RB | 2092 | CG16959-RB | 245..1759 | 16..1530 | 7575 | 100 | Plus |
CG16959-RA | 2292 | CG16959-RA | 445..1959 | 16..1530 | 7575 | 100 | Plus |
CG16959-RE | 1866 | CG16959-RE | 268..1715 | 16..1463 | 7240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:54:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15120211..15120950 | 1530..791 | 3700 | 100 | Minus |
3L | 28110227 | 3L | 15122624..15123055 | 447..16 | 2160 | 100 | Minus |
3L | 28110227 | 3L | 15121064..15121409 | 791..446 | 1730 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:54:44 has no hits.
BS07447.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:54 Download gff for
BS07447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16959-RB | 1..1512 | 17..1528 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:01 Download gff for
BS07447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16959-RB | 238..1756 | 12..1530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:16 Download gff for
BS07447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16959-RA | 446..1955 | 17..1526 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:54 Download gff for
BS07447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16959-RB | 238..1756 | 12..1530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:44 Download gff for
BS07447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16959-RA | 446..1955 | 17..1526 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:44 Download gff for
BS07447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15120215..15120949 | 792..1526 | 100 | <- | Minus |
3L | 15121064..15121407 | 448..791 | 100 | <- | Minus |
3L | 15122624..15123054 | 17..447 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:16 Download gff for
BS07447.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15113315..15114049 | 792..1526 | 100 | <- | Minus |
arm_3L | 15114164..15114507 | 448..791 | 100 | <- | Minus |
arm_3L | 15115724..15116154 | 17..447 | 100 | | Minus |
BS07447.pep Sequence
Translation from 16 to 1527
> BS07447.pep
MRRRKVLICWAALQAGSSILTCLLLLLTTGQNPQQVAAGIVPPPWSDPAQ
NPCASMSGGWQLLYWAPLKKCFKIFTLGYPCPATMELSPTAVSAKRKDAP
AAECRCPPGTALSPLHDNVCYKLYERGPCQPEEYFQPVPDQVKRTATGNR
WGTCKRPLHCPEDMLFWPRDNKCYARHAKGPCSRGKLLVRNEEGLAECRC
EDVGDLASFYYPAEESCYEHYTKGPCSTPGHIFLPGGRCDCQRHLPHYHA
PHQMCYELDTPGPCPPGHIFRIPDEVQETTGSTLQLLPRAQCQCKEGYVP
WSDGICYRLYTRGPCGPNEFLVNGTSCVRNFCGKNRLYFPAEDSCYRIGS
QGPCALHQVVIFDFTARPSIDGISYNGMCGCSGVLTNLDQQCTGDGADKE
QNICESTPGMVEINGQCHKLYSRGPCGAGQWLEPLKSQTTNGTSILVHAS
RAKCVCRPGYTPSESDQRGMSNCSAPSVSLARYLTNERLNSKFLNDLHLG
GTT*
BS07447.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16959-PB | 503 | CG16959-PB | 1..503 | 1..503 | 2845 | 100 | Plus |
CG16959-PA | 503 | CG16959-PA | 1..503 | 1..503 | 2845 | 100 | Plus |
CG16959-PE | 489 | CG16959-PE | 1..483 | 1..483 | 2736 | 99.8 | Plus |
CG16959-PD | 489 | CG16959-PD | 1..483 | 1..483 | 2736 | 99.8 | Plus |
CG16959-PC | 489 | CG16959-PC | 1..483 | 1..483 | 2736 | 99.8 | Plus |