Clone BS07448 Report

Search the DGRC for BS07448

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCbp53E-RA
Protein status:BS07448.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07448.3prime Sequence

836 bp (808 high quality bases) assembled on 2006-01-06

> BS07448.3prime
ATGGTCTAGAAAGCTTTTACTCCTCGTCGTCGGGCGATATTTTGGCCAGT
GTTAGCAGAATCATGGTCAGTTCTTTCCGGGAGATCTTTCCATGCTTGTC
GGTGCCAACTCCCCGCATGATGGTCTCCTCGAAAGCGGCCAGATCCTGGG
CATCATAGTCGTCCTTCTTGACCAACTCCAAAAGGTCCTTCAAGAAGCCT
TTGAGCTCCTCATTTTCAATGGTGCCGCTATTGTCACGATCGTAGAGTGA
GAATACTTTTTCAATATCCTCTTTGGTCAACTTTGTGGCGCCCTTAAACA
CTTGGCGGCACAGGAAGTTCTCTTTAACCGGAAGCAATTTGGCCATTTCC
GACAACTGCAGACGTCCGTCCTTGTTGGCATCGAATACTTGGAGCATAGT
ATCGGTGTACTCAATGAGCTTGTCCTCGGACACGTCGTTGATCTTTTTGG
CCTCTTTGAGCAAATCGCGCAAGAAATTTTTCAGCTCATCCGCTTCAATG
TAACCCGAATTGTCGGTGTCGTATTCACGCCAGATCTTCATGAATTCAAC
GCTAGATTCCAGAGGATTATCGAAGCGGAAGAGCAAAAGGAAATTCTCCT
CCATGGGCAAAAGTTGAGCCAGCTCTCTGATATCGATTTTACCATCCTGA
TTGTCATCGTAGGCCTCCATGAAGCAGGACTTTAGCTCCTCGAGCATGGT
GTCCGTTACTGCCTCTGGACTAATGTCTGTGGCATTGGCACTCGACACGA
ACTCCCGCAGGAATCCGTCCAGCTCGGTGCCCTCAATGTAGCCATTTTCA
TCTTTATCGTAATGCGCCCAGACATCCATGAACTGG

BS07448.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6702-PA 933 Cbp53E-RA 114..933 836..17 4075 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:58:23
Subject Length Description Subject Range Query Range Score Percent Strand
Cbp53E-RB 1400 CG6702-RB 435..1254 836..17 4085 99.9 Minus
Cbp53E-RA 2705 CG6702-RA 386..1205 836..17 4085 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16994409..16994557 165..17 745 100 Minus
2R 25286936 2R 16986069..16986211 537..395 715 100 Minus
2R 25286936 2R 16984840..16984935 714..619 465 99 Minus
2R 25286936 2R 16985917..16986005 624..536 445 100 Minus
2R 25286936 2R 16984700..16984785 797..712 430 100 Minus
2R 25286936 2R 16994282..16994354 235..163 365 100 Minus
2R 25286936 2R 16994158..16994217 294..235 300 100 Minus
2R 25286936 2R 16986580..16986636 395..339 285 100 Minus
2R 25286936 2R 16986705..16986751 338..292 235 100 Minus
2R 25286936 2R 16984453..16984490 836..799 190 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:58:21 has no hits.

BS07448.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:11 Download gff for BS07448.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6702-PA 114..933 17..836 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:03:26 Download gff for BS07448.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6702-PA 114..933 17..836 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:00:07 Download gff for BS07448.3prime
Subject Subject Range Query Range Percent Splice Strand
Cbp53E-RA 386..1207 13..836 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:12:41 Download gff for BS07448.3prime
Subject Subject Range Query Range Percent Splice Strand
Cbp53E-RA 386..1207 13..836 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:12:41 Download gff for BS07448.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16994411..16994559 13..163 98   Minus
2R 16984453..16984490 799..836 100 -> Minus
2R 16984699..16984784 713..798 98 -> Minus
2R 16984842..16984931 623..712 100 -> Minus
2R 16985919..16986005 536..622 100 -> Minus
2R 16986071..16986211 395..535 100 -> Minus
2R 16986581..16986636 339..394 100 -> Minus
2R 16986705..16986750 293..338 100 -> Minus
2R 16994160..16994216 236..292 100 -> Minus
2R 16994282..16994353 164..235 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:00:07 Download gff for BS07448.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12881665..12881721 236..292 100 -> Minus
arm_2R 12881787..12881858 164..235 100 -> Minus
arm_2R 12873576..12873716 395..535 100 -> Minus
arm_2R 12874086..12874141 339..394 100 -> Minus
arm_2R 12874210..12874255 293..338 100 -> Minus
arm_2R 12871958..12871995 799..836 100 -> Minus
arm_2R 12872204..12872289 713..798 98 -> Minus
arm_2R 12872347..12872436 623..712 100 -> Minus
arm_2R 12873424..12873510 536..622 100 -> Minus
arm_2R 12881916..12882064 13..163 98   Minus

BS07448.5prime Sequence

856 bp (794 high quality bases) assembled on 2006-01-06

> BS07448.5prime
GAAGTTATCAGTCGACATGGACTCTGCCGCCGCCGCCGCCGCCAAGCGCG
TTCAAATCGAGAAGGCCCACAACTTTATGCGCCAGTATCGTGATCCCGAG
TCCAGGGAACTCAAGAAGCTGTCGGCCAACCAGTTCATGGATGTCTGGGC
GCATTACGATAAAGATGGAAATGGCTACATTGAGGGCACCGAGCTGGACG
GATTCCTGCGGGAGTTCGTGTCGAGTGCCAATGCCACAGACATTAGTCCA
GAGGCAGTAACGGACACCATGCTCGAGGAGCTAAAGTCCTGCTTCATGGA
GGCCTACGATGACAATCAGGATGGTAAAATCGATATCAGAGAGCTGGCTC
AACTTTTGCCCATGGAGGAGAATTTCCTTTTGCTCTTCCGCTTCGATAAT
CCTCTGGAATCTAGCGTTGAATTCATGAAGATCTGGCGTGAATACGACAC
CGACAATTCGGGTTACATTGAAGCGGATGAGCTGAAAAATTTCTTGCGCG
ATTTGCTCAAAGAGGCCAAAAAGATCAACGACGTGTCCGAGGACAAGCTC
ATTGAGTACACCGATACTATGCTCCAAGTATTCGATGCCAACAAGGACGG
ACGTCTGCAGTTGTCGGAAATGGCCAAATTGCTTCCGGTTAAAGAGAACT
TCCTGTGCCGCCAAGTGTTTAAGGGCGCCACAAAGTTGACCAAAGAGGAT
ATTGAAAAAGTATTCTCACTCTACGATCGTGACAATAGCGGCACCATTGA
AAATGAGGAGCTCAAAGGCTTCTTGAAGGACCTTTTGGAGTTGGTCAAGA
AGGACGACTATGATGCCCAGGATCTGGCCGCTTTCGAGGAGACCATCATG
CGGGGA

BS07448.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG6702-PA 933 Cbp53E-RA 1..840 17..856 4200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
Cbp53E-RB 1400 CG6702-RB 322..1161 17..856 4200 100 Plus
Cbp53E-RA 2705 CG6702-RA 273..1112 17..856 4200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:18:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16984340..16984491 17..168 760 100 Plus
2R 25286936 2R 16986069..16986211 429..571 715 100 Plus
2R 25286936 2R 16984840..16984935 252..347 465 99 Plus
2R 25286936 2R 16985917..16986005 342..430 445 100 Plus
2R 25286936 2R 16984698..16984785 167..254 440 100 Plus
2R 25286936 2R 16994282..16994354 731..803 365 100 Plus
2R 25286936 2R 16994158..16994217 672..731 300 100 Plus
2R 25286936 2R 16986580..16986636 571..627 285 100 Plus
2R 25286936 2R 16994409..16994464 801..856 280 100 Plus
2R 25286936 2R 16986705..16986751 628..674 235 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:18:09 has no hits.

BS07448.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:12 Download gff for BS07448.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6702-PA 1..839 17..855 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:03:27 Download gff for BS07448.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6702-PA 1..839 17..855 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:06:00 Download gff for BS07448.5prime
Subject Subject Range Query Range Percent Splice Strand
Cbp53E-RA 265..1111 9..855 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:43:39 Download gff for BS07448.5prime
Subject Subject Range Query Range Percent Splice Strand
Cbp53E-RA 265..1111 9..855 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:43:39 Download gff for BS07448.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16984332..16984490 9..167 97 -> Plus
2R 16984699..16984784 168..253 100 -> Plus
2R 16984842..16984931 254..343 100 -> Plus
2R 16985919..16986005 344..430 100 -> Plus
2R 16986071..16986211 431..571 100 -> Plus
2R 16986581..16986636 572..627 100 -> Plus
2R 16986705..16986750 628..673 100 -> Plus
2R 16994160..16994216 674..730 100 -> Plus
2R 16994282..16994353 731..802 100 -> Plus
2R 16994411..16994463 803..855 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:06:00 Download gff for BS07448.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12874086..12874141 572..627 100 -> Plus
arm_2R 12874210..12874255 628..673 100 -> Plus
arm_2R 12881665..12881721 674..730 100 -> Plus
arm_2R 12873424..12873510 344..430 100 -> Plus
arm_2R 12873576..12873716 431..571 100 -> Plus
arm_2R 12871837..12871995 9..167 97 -> Plus
arm_2R 12872204..12872289 168..253 100 -> Plus
arm_2R 12872347..12872436 254..343 100 -> Plus
arm_2R 12881787..12881858 731..802 100 -> Plus
arm_2R 12881916..12881968 803..855 100   Plus

BS07448.complete Sequence

965 bp (965 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635865

> BS07448.complete
GAAGTTATCAGTCGACATGGACTCTGCCGCCGCCGCCGCCGCCAAGCGCG
TTCAAATCGAGAAGGCCCACAACTTTATGCGCCAGTATCGTGATCCCGAG
TCCAGGGAACTCAAGAAGCTGTCGGCCAACCAGTTCATGGATGTCTGGGC
GCATTACGATAAAGATGGAAATGGCTACATTGAGGGCACCGAGCTGGACG
GATTCCTGCGGGAGTTCGTGTCGAGTGCCAATGCCACAGACATTAGTCCA
GAGGCAGTAACGGACACCATGCTCGAGGAGCTAAAGTCCTGCTTCATGGA
GGCCTACGATGACAATCAGGATGGTAAAATCGATATCAGAGAGCTGGCTC
AACTTTTGCCCATGGAGGAGAATTTCCTTTTGCTCTTCCGCTTCGATAAT
CCTCTGGAATCTAGCGTTGAATTCATGAAGATCTGGCGTGAATACGACAC
CGACAATTCGGGTTACATTGAAGCGGATGAGCTGAAAAATTTCTTGCGCG
ATTTGCTCAAAGAGGCCAAAAAGATCAACGACGTGTCCGAGGACAAGCTC
ATTGAGTACACCGATACTATGCTCCAAGTATTCGATGCCAACAAGGACGG
ACGTCTGCAGTTGTCGGAAATGGCCAAATTGCTTCCGGTTAAAGAGAACT
TCCTGTGCCGCCAAGTGTTTAAGGGCGCCACAAAGTTGACCAAAGAGGAT
ATTGAAAAAGTATTCTCACTCTACGATCGTGACAATAGCGGCACCATTGA
AAATGAGGAGCTCAAAGGCTTCTTGAAGGACCTTTTGGAGTTGGTCAAGA
AGGACGACTATGATGCCCAGGATCTGGCCGCTTTCGAGGAGACCATCATG
CGGGGAGTTGGCACCGACAAGCATGGAAAGATCTCCCGGAAAGAACTGAC
CATGATTCTGCTAACACTGGCCAAAATATCGCCCGACGACGAGGAGTAAA
AGCTTTCTAGACCAT

BS07448.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
Cbp53E-RB 933 CG6702-PB 1..933 17..949 4665 100 Plus
Cbp53E-RA 933 CG6702-PA 1..933 17..949 4665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
Cbp53E-RB 1400 CG6702-RB 322..1254 17..949 4665 100 Plus
Cbp53E-RA 2705 CG6702-RA 273..1205 17..949 4665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16984340..16984491 17..168 760 100 Plus
2R 25286936 2R 16994409..16994557 801..949 745 100 Plus
2R 25286936 2R 16986069..16986211 429..571 715 100 Plus
2R 25286936 2R 16984840..16984935 252..347 465 99 Plus
2R 25286936 2R 16985917..16986005 342..430 445 100 Plus
2R 25286936 2R 16984698..16984785 167..254 440 100 Plus
2R 25286936 2R 16994282..16994354 731..803 365 100 Plus
2R 25286936 2R 16994158..16994217 672..731 300 100 Plus
2R 25286936 2R 16986580..16986636 571..627 285 100 Plus
2R 25286936 2R 16986705..16986751 628..674 235 100 Plus
Blast to na_te.dros performed on 2014-11-28 05:39:53 has no hits.

BS07448.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:56 Download gff for BS07448.complete
Subject Subject Range Query Range Percent Splice Strand
Cbp53E-RA 1..933 17..949 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:43:40 Download gff for BS07448.complete
Subject Subject Range Query Range Percent Splice Strand
Cbp53E-RA 240..1170 17..947 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:33 Download gff for BS07448.complete
Subject Subject Range Query Range Percent Splice Strand
Cbp53E-RA 273..1203 17..947 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:56 Download gff for BS07448.complete
Subject Subject Range Query Range Percent Splice Strand
Cbp53E-RA 232..1174 9..953 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:15:47 Download gff for BS07448.complete
Subject Subject Range Query Range Percent Splice Strand
Cbp53E-RA 273..1203 17..947 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:15:47 Download gff for BS07448.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16984340..16984490 17..167 100 -> Plus
2R 16984699..16984784 168..253 100 -> Plus
2R 16984842..16984931 254..343 100 -> Plus
2R 16985919..16986005 344..430 100 -> Plus
2R 16986071..16986211 431..571 100 -> Plus
2R 16986581..16986636 572..627 100 -> Plus
2R 16986705..16986750 628..673 100 -> Plus
2R 16994160..16994216 674..730 100 -> Plus
2R 16994282..16994353 731..802 100 -> Plus
2R 16994411..16994555 803..947 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:33 Download gff for BS07448.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12871845..12871995 17..167 100 -> Plus
arm_2R 12872204..12872289 168..253 100 -> Plus
arm_2R 12872347..12872436 254..343 100 -> Plus
arm_2R 12873424..12873510 344..430 100 -> Plus
arm_2R 12873576..12873716 431..571 100 -> Plus
arm_2R 12874086..12874141 572..627 100 -> Plus
arm_2R 12874210..12874255 628..673 100 -> Plus
arm_2R 12881665..12881721 674..730 100 -> Plus
arm_2R 12881787..12881858 731..802 100 -> Plus
arm_2R 12881916..12882060 803..947 100   Plus

BS07448.pep Sequence

Translation from 16 to 948

> BS07448.pep
MDSAAAAAAKRVQIEKAHNFMRQYRDPESRELKKLSANQFMDVWAHYDKD
GNGYIEGTELDGFLREFVSSANATDISPEAVTDTMLEELKSCFMEAYDDN
QDGKIDIRELAQLLPMEENFLLLFRFDNPLESSVEFMKIWREYDTDNSGY
IEADELKNFLRDLLKEAKKINDVSEDKLIEYTDTMLQVFDANKDGRLQLS
EMAKLLPVKENFLCRQVFKGATKLTKEDIEKVFSLYDRDNSGTIENEELK
GFLKDLLELVKKDDYDAQDLAAFEETIMRGVGTDKHGKISRKELTMILLT
LAKISPDDEE*

BS07448.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:52
Subject Length Description Subject Range Query Range Score Percent Strand
Cbp53E-PB 310 CG6702-PB 1..310 1..310 1583 100 Plus
Cbp53E-PA 310 CG6702-PA 1..310 1..310 1583 100 Plus