Clone Sequence Records
BS07448.3prime Sequence
836 bp (808 high quality bases) assembled on 2006-01-06
> BS07448.3prime
ATGGTCTAGAAAGCTTTTACTCCTCGTCGTCGGGCGATATTTTGGCCAGT
GTTAGCAGAATCATGGTCAGTTCTTTCCGGGAGATCTTTCCATGCTTGTC
GGTGCCAACTCCCCGCATGATGGTCTCCTCGAAAGCGGCCAGATCCTGGG
CATCATAGTCGTCCTTCTTGACCAACTCCAAAAGGTCCTTCAAGAAGCCT
TTGAGCTCCTCATTTTCAATGGTGCCGCTATTGTCACGATCGTAGAGTGA
GAATACTTTTTCAATATCCTCTTTGGTCAACTTTGTGGCGCCCTTAAACA
CTTGGCGGCACAGGAAGTTCTCTTTAACCGGAAGCAATTTGGCCATTTCC
GACAACTGCAGACGTCCGTCCTTGTTGGCATCGAATACTTGGAGCATAGT
ATCGGTGTACTCAATGAGCTTGTCCTCGGACACGTCGTTGATCTTTTTGG
CCTCTTTGAGCAAATCGCGCAAGAAATTTTTCAGCTCATCCGCTTCAATG
TAACCCGAATTGTCGGTGTCGTATTCACGCCAGATCTTCATGAATTCAAC
GCTAGATTCCAGAGGATTATCGAAGCGGAAGAGCAAAAGGAAATTCTCCT
CCATGGGCAAAAGTTGAGCCAGCTCTCTGATATCGATTTTACCATCCTGA
TTGTCATCGTAGGCCTCCATGAAGCAGGACTTTAGCTCCTCGAGCATGGT
GTCCGTTACTGCCTCTGGACTAATGTCTGTGGCATTGGCACTCGACACGA
ACTCCCGCAGGAATCCGTCCAGCTCGGTGCCCTCAATGTAGCCATTTTCA
TCTTTATCGTAATGCGCCCAGACATCCATGAACTGG
BS07448.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6702-PA | 933 | Cbp53E-RA | 114..933 | 836..17 | 4075 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:58:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cbp53E-RB | 1400 | CG6702-RB | 435..1254 | 836..17 | 4085 | 99.9 | Minus |
Cbp53E-RA | 2705 | CG6702-RA | 386..1205 | 836..17 | 4085 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:58:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16994409..16994557 | 165..17 | 745 | 100 | Minus |
2R | 25286936 | 2R | 16986069..16986211 | 537..395 | 715 | 100 | Minus |
2R | 25286936 | 2R | 16984840..16984935 | 714..619 | 465 | 99 | Minus |
2R | 25286936 | 2R | 16985917..16986005 | 624..536 | 445 | 100 | Minus |
2R | 25286936 | 2R | 16984700..16984785 | 797..712 | 430 | 100 | Minus |
2R | 25286936 | 2R | 16994282..16994354 | 235..163 | 365 | 100 | Minus |
2R | 25286936 | 2R | 16994158..16994217 | 294..235 | 300 | 100 | Minus |
2R | 25286936 | 2R | 16986580..16986636 | 395..339 | 285 | 100 | Minus |
2R | 25286936 | 2R | 16986705..16986751 | 338..292 | 235 | 100 | Minus |
2R | 25286936 | 2R | 16984453..16984490 | 836..799 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:58:21 has no hits.
BS07448.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:11 Download gff for
BS07448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6702-PA | 114..933 | 17..836 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:03:26 Download gff for
BS07448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6702-PA | 114..933 | 17..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:00:07 Download gff for
BS07448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp53E-RA | 386..1207 | 13..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:12:41 Download gff for
BS07448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp53E-RA | 386..1207 | 13..836 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:12:41 Download gff for
BS07448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16994411..16994559 | 13..163 | 98 | | Minus |
2R | 16984453..16984490 | 799..836 | 100 | -> | Minus |
2R | 16984699..16984784 | 713..798 | 98 | -> | Minus |
2R | 16984842..16984931 | 623..712 | 100 | -> | Minus |
2R | 16985919..16986005 | 536..622 | 100 | -> | Minus |
2R | 16986071..16986211 | 395..535 | 100 | -> | Minus |
2R | 16986581..16986636 | 339..394 | 100 | -> | Minus |
2R | 16986705..16986750 | 293..338 | 100 | -> | Minus |
2R | 16994160..16994216 | 236..292 | 100 | -> | Minus |
2R | 16994282..16994353 | 164..235 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:00:07 Download gff for
BS07448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12881665..12881721 | 236..292 | 100 | -> | Minus |
arm_2R | 12881787..12881858 | 164..235 | 100 | -> | Minus |
arm_2R | 12873576..12873716 | 395..535 | 100 | -> | Minus |
arm_2R | 12874086..12874141 | 339..394 | 100 | -> | Minus |
arm_2R | 12874210..12874255 | 293..338 | 100 | -> | Minus |
arm_2R | 12871958..12871995 | 799..836 | 100 | -> | Minus |
arm_2R | 12872204..12872289 | 713..798 | 98 | -> | Minus |
arm_2R | 12872347..12872436 | 623..712 | 100 | -> | Minus |
arm_2R | 12873424..12873510 | 536..622 | 100 | -> | Minus |
arm_2R | 12881916..12882064 | 13..163 | 98 | | Minus |
BS07448.5prime Sequence
856 bp (794 high quality bases) assembled on 2006-01-06
> BS07448.5prime
GAAGTTATCAGTCGACATGGACTCTGCCGCCGCCGCCGCCGCCAAGCGCG
TTCAAATCGAGAAGGCCCACAACTTTATGCGCCAGTATCGTGATCCCGAG
TCCAGGGAACTCAAGAAGCTGTCGGCCAACCAGTTCATGGATGTCTGGGC
GCATTACGATAAAGATGGAAATGGCTACATTGAGGGCACCGAGCTGGACG
GATTCCTGCGGGAGTTCGTGTCGAGTGCCAATGCCACAGACATTAGTCCA
GAGGCAGTAACGGACACCATGCTCGAGGAGCTAAAGTCCTGCTTCATGGA
GGCCTACGATGACAATCAGGATGGTAAAATCGATATCAGAGAGCTGGCTC
AACTTTTGCCCATGGAGGAGAATTTCCTTTTGCTCTTCCGCTTCGATAAT
CCTCTGGAATCTAGCGTTGAATTCATGAAGATCTGGCGTGAATACGACAC
CGACAATTCGGGTTACATTGAAGCGGATGAGCTGAAAAATTTCTTGCGCG
ATTTGCTCAAAGAGGCCAAAAAGATCAACGACGTGTCCGAGGACAAGCTC
ATTGAGTACACCGATACTATGCTCCAAGTATTCGATGCCAACAAGGACGG
ACGTCTGCAGTTGTCGGAAATGGCCAAATTGCTTCCGGTTAAAGAGAACT
TCCTGTGCCGCCAAGTGTTTAAGGGCGCCACAAAGTTGACCAAAGAGGAT
ATTGAAAAAGTATTCTCACTCTACGATCGTGACAATAGCGGCACCATTGA
AAATGAGGAGCTCAAAGGCTTCTTGAAGGACCTTTTGGAGTTGGTCAAGA
AGGACGACTATGATGCCCAGGATCTGGCCGCTTTCGAGGAGACCATCATG
CGGGGA
BS07448.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:47:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6702-PA | 933 | Cbp53E-RA | 1..840 | 17..856 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:18:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cbp53E-RB | 1400 | CG6702-RB | 322..1161 | 17..856 | 4200 | 100 | Plus |
Cbp53E-RA | 2705 | CG6702-RA | 273..1112 | 17..856 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:18:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16984340..16984491 | 17..168 | 760 | 100 | Plus |
2R | 25286936 | 2R | 16986069..16986211 | 429..571 | 715 | 100 | Plus |
2R | 25286936 | 2R | 16984840..16984935 | 252..347 | 465 | 99 | Plus |
2R | 25286936 | 2R | 16985917..16986005 | 342..430 | 445 | 100 | Plus |
2R | 25286936 | 2R | 16984698..16984785 | 167..254 | 440 | 100 | Plus |
2R | 25286936 | 2R | 16994282..16994354 | 731..803 | 365 | 100 | Plus |
2R | 25286936 | 2R | 16994158..16994217 | 672..731 | 300 | 100 | Plus |
2R | 25286936 | 2R | 16986580..16986636 | 571..627 | 285 | 100 | Plus |
2R | 25286936 | 2R | 16994409..16994464 | 801..856 | 280 | 100 | Plus |
2R | 25286936 | 2R | 16986705..16986751 | 628..674 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:18:09 has no hits.
BS07448.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:12 Download gff for
BS07448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6702-PA | 1..839 | 17..855 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:03:27 Download gff for
BS07448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6702-PA | 1..839 | 17..855 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:06:00 Download gff for
BS07448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp53E-RA | 265..1111 | 9..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:43:39 Download gff for
BS07448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp53E-RA | 265..1111 | 9..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:43:39 Download gff for
BS07448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16984332..16984490 | 9..167 | 97 | -> | Plus |
2R | 16984699..16984784 | 168..253 | 100 | -> | Plus |
2R | 16984842..16984931 | 254..343 | 100 | -> | Plus |
2R | 16985919..16986005 | 344..430 | 100 | -> | Plus |
2R | 16986071..16986211 | 431..571 | 100 | -> | Plus |
2R | 16986581..16986636 | 572..627 | 100 | -> | Plus |
2R | 16986705..16986750 | 628..673 | 100 | -> | Plus |
2R | 16994160..16994216 | 674..730 | 100 | -> | Plus |
2R | 16994282..16994353 | 731..802 | 100 | -> | Plus |
2R | 16994411..16994463 | 803..855 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:06:00 Download gff for
BS07448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12874086..12874141 | 572..627 | 100 | -> | Plus |
arm_2R | 12874210..12874255 | 628..673 | 100 | -> | Plus |
arm_2R | 12881665..12881721 | 674..730 | 100 | -> | Plus |
arm_2R | 12873424..12873510 | 344..430 | 100 | -> | Plus |
arm_2R | 12873576..12873716 | 431..571 | 100 | -> | Plus |
arm_2R | 12871837..12871995 | 9..167 | 97 | -> | Plus |
arm_2R | 12872204..12872289 | 168..253 | 100 | -> | Plus |
arm_2R | 12872347..12872436 | 254..343 | 100 | -> | Plus |
arm_2R | 12881787..12881858 | 731..802 | 100 | -> | Plus |
arm_2R | 12881916..12881968 | 803..855 | 100 | | Plus |
BS07448.complete Sequence
965 bp (965 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635865
> BS07448.complete
GAAGTTATCAGTCGACATGGACTCTGCCGCCGCCGCCGCCGCCAAGCGCG
TTCAAATCGAGAAGGCCCACAACTTTATGCGCCAGTATCGTGATCCCGAG
TCCAGGGAACTCAAGAAGCTGTCGGCCAACCAGTTCATGGATGTCTGGGC
GCATTACGATAAAGATGGAAATGGCTACATTGAGGGCACCGAGCTGGACG
GATTCCTGCGGGAGTTCGTGTCGAGTGCCAATGCCACAGACATTAGTCCA
GAGGCAGTAACGGACACCATGCTCGAGGAGCTAAAGTCCTGCTTCATGGA
GGCCTACGATGACAATCAGGATGGTAAAATCGATATCAGAGAGCTGGCTC
AACTTTTGCCCATGGAGGAGAATTTCCTTTTGCTCTTCCGCTTCGATAAT
CCTCTGGAATCTAGCGTTGAATTCATGAAGATCTGGCGTGAATACGACAC
CGACAATTCGGGTTACATTGAAGCGGATGAGCTGAAAAATTTCTTGCGCG
ATTTGCTCAAAGAGGCCAAAAAGATCAACGACGTGTCCGAGGACAAGCTC
ATTGAGTACACCGATACTATGCTCCAAGTATTCGATGCCAACAAGGACGG
ACGTCTGCAGTTGTCGGAAATGGCCAAATTGCTTCCGGTTAAAGAGAACT
TCCTGTGCCGCCAAGTGTTTAAGGGCGCCACAAAGTTGACCAAAGAGGAT
ATTGAAAAAGTATTCTCACTCTACGATCGTGACAATAGCGGCACCATTGA
AAATGAGGAGCTCAAAGGCTTCTTGAAGGACCTTTTGGAGTTGGTCAAGA
AGGACGACTATGATGCCCAGGATCTGGCCGCTTTCGAGGAGACCATCATG
CGGGGAGTTGGCACCGACAAGCATGGAAAGATCTCCCGGAAAGAACTGAC
CATGATTCTGCTAACACTGGCCAAAATATCGCCCGACGACGAGGAGTAAA
AGCTTTCTAGACCAT
BS07448.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:39:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cbp53E-RB | 933 | CG6702-PB | 1..933 | 17..949 | 4665 | 100 | Plus |
Cbp53E-RA | 933 | CG6702-PA | 1..933 | 17..949 | 4665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:39:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cbp53E-RB | 1400 | CG6702-RB | 322..1254 | 17..949 | 4665 | 100 | Plus |
Cbp53E-RA | 2705 | CG6702-RA | 273..1205 | 17..949 | 4665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:39:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16984340..16984491 | 17..168 | 760 | 100 | Plus |
2R | 25286936 | 2R | 16994409..16994557 | 801..949 | 745 | 100 | Plus |
2R | 25286936 | 2R | 16986069..16986211 | 429..571 | 715 | 100 | Plus |
2R | 25286936 | 2R | 16984840..16984935 | 252..347 | 465 | 99 | Plus |
2R | 25286936 | 2R | 16985917..16986005 | 342..430 | 445 | 100 | Plus |
2R | 25286936 | 2R | 16984698..16984785 | 167..254 | 440 | 100 | Plus |
2R | 25286936 | 2R | 16994282..16994354 | 731..803 | 365 | 100 | Plus |
2R | 25286936 | 2R | 16994158..16994217 | 672..731 | 300 | 100 | Plus |
2R | 25286936 | 2R | 16986580..16986636 | 571..627 | 285 | 100 | Plus |
2R | 25286936 | 2R | 16986705..16986751 | 628..674 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:39:53 has no hits.
BS07448.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:56 Download gff for
BS07448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp53E-RA | 1..933 | 17..949 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:43:40 Download gff for
BS07448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp53E-RA | 240..1170 | 17..947 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:33 Download gff for
BS07448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp53E-RA | 273..1203 | 17..947 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:56 Download gff for
BS07448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp53E-RA | 232..1174 | 9..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:15:47 Download gff for
BS07448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cbp53E-RA | 273..1203 | 17..947 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:15:47 Download gff for
BS07448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16984340..16984490 | 17..167 | 100 | -> | Plus |
2R | 16984699..16984784 | 168..253 | 100 | -> | Plus |
2R | 16984842..16984931 | 254..343 | 100 | -> | Plus |
2R | 16985919..16986005 | 344..430 | 100 | -> | Plus |
2R | 16986071..16986211 | 431..571 | 100 | -> | Plus |
2R | 16986581..16986636 | 572..627 | 100 | -> | Plus |
2R | 16986705..16986750 | 628..673 | 100 | -> | Plus |
2R | 16994160..16994216 | 674..730 | 100 | -> | Plus |
2R | 16994282..16994353 | 731..802 | 100 | -> | Plus |
2R | 16994411..16994555 | 803..947 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:33 Download gff for
BS07448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12871845..12871995 | 17..167 | 100 | -> | Plus |
arm_2R | 12872204..12872289 | 168..253 | 100 | -> | Plus |
arm_2R | 12872347..12872436 | 254..343 | 100 | -> | Plus |
arm_2R | 12873424..12873510 | 344..430 | 100 | -> | Plus |
arm_2R | 12873576..12873716 | 431..571 | 100 | -> | Plus |
arm_2R | 12874086..12874141 | 572..627 | 100 | -> | Plus |
arm_2R | 12874210..12874255 | 628..673 | 100 | -> | Plus |
arm_2R | 12881665..12881721 | 674..730 | 100 | -> | Plus |
arm_2R | 12881787..12881858 | 731..802 | 100 | -> | Plus |
arm_2R | 12881916..12882060 | 803..947 | 100 | | Plus |
BS07448.pep Sequence
Translation from 16 to 948
> BS07448.pep
MDSAAAAAAKRVQIEKAHNFMRQYRDPESRELKKLSANQFMDVWAHYDKD
GNGYIEGTELDGFLREFVSSANATDISPEAVTDTMLEELKSCFMEAYDDN
QDGKIDIRELAQLLPMEENFLLLFRFDNPLESSVEFMKIWREYDTDNSGY
IEADELKNFLRDLLKEAKKINDVSEDKLIEYTDTMLQVFDANKDGRLQLS
EMAKLLPVKENFLCRQVFKGATKLTKEDIEKVFSLYDRDNSGTIENEELK
GFLKDLLELVKKDDYDAQDLAAFEETIMRGVGTDKHGKISRKELTMILLT
LAKISPDDEE*
BS07448.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cbp53E-PB | 310 | CG6702-PB | 1..310 | 1..310 | 1583 | 100 | Plus |
Cbp53E-PA | 310 | CG6702-PA | 1..310 | 1..310 | 1583 | 100 | Plus |