Clone Sequence Records
BS07452.3prime Sequence
562 bp (494 high quality bases) assembled on 2006-01-06
> BS07452.3prime
ATGGTCTAGAAAGCTTCTAAATGCCCGCATAGAGAGGCAGCTTGGCGGTG
TCCACCTTCTCCTCCACCTTGAACGAGGGGAATAGGCCGCCCTGGTTGGT
GCGGGTATTCTTGCCCTTGGAATTGCCATCCCAATGGTTACCAGCCACCG
AGACGAGGTCACCAACACGCAGCTGTAGATCCTCGTGCGTGCGCGGCTTG
TGGGCGATAACGACGCGGCGATTGTGCGCATTCTGGCCACCGTAGTAGTA
TATGTCGTCCAGCGACTTGAACCGATGCGCTGCATCCGGATACATCGTCT
GCATTATCTCGTAGGCCACGCGACACACCTGCGACGAGAAGGTGCACACC
AGATGATCGGACATGGAAAGCAGGTGGATATCCAGAATGATCCCGTTCAG
GGCGGTGTCCGTGTATCGTGTGGATACGGACGCCATGCGCGCCACCTCCG
GATCACCAATGATCTGGTACTGCGGGTACTTTCGGCGCGCCTCCTCAATA
ACCTGGGCATCATCCGATGCGAGGAAAATCCGGCGAGCCACAGTGCTGCC
GTTTACCTCCAG
BS07452.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2448-PA | 1860 | FucT6-RA | 1315..1860 | 562..17 | 2730 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FucT6-RA | 2795 | CG2448-RA | 1819..2364 | 562..17 | 2730 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11707006..11707551 | 17..562 | 2730 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:21:31 has no hits.
BS07452.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:17 Download gff for
BS07452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FucT6-PA | 1315..1860 | 17..562 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:03:35 Download gff for
BS07452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2448-PA | 1315..1860 | 17..562 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:37:10 Download gff for
BS07452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FucT6-RA | 1819..2373 | 8..562 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:45:16 Download gff for
BS07452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FucT6-RA | 1819..2373 | 8..562 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:45:16 Download gff for
BS07452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11706997..11707551 | 8..562 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:37:10 Download gff for
BS07452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11601030..11601584 | 8..562 | 99 | | Plus |
BS07452.5prime Sequence
926 bp (776 high quality bases) assembled on 2006-01-06
> BS07452.5prime
GAAGTTATCAGTCGACATGCTGCTGGTGCGTCAGCTATTCGGGGCTTCGG
CCAACTCCTGGGCACGCGCCCTCATCATATTCGTACTGGCCTGGATCGGG
TTGGTCTACGTGTTCGTGGTCAAGCTGACCAATACTCAGGGCCAGCAGGC
GGCCGGGGAGAGTGAGCTGAACGCCCGTCGCATATCACAGGCGCTCCAGA
TGCTGGAGCACACGAGACAGCGCAATGAGGAGCTTAAACAGCTCATCGAC
GAGTTGATGAGTGACCAACTGGACAAGCAGAGCGCAATGAAACTGGTGCA
AAGGCTGGAGAACGATGCGCTAAATCCAAAGCTGGCGCCCGAGGTCGCCG
GCCCGGAACCAGAATCCATGTTCGAGTCCGCCCCCGCTGATCTGCGCGGT
TGGAATAATGTGGCCGAGGGAGCGCCCAATGATCTGGAGGCCGGTGTTCC
GGATCATGGCGAATTCGAGCCCAGCCTAGAGTACGAGTTCACGCGCAGAC
GCATCCAGACGAACATCGGTGAGATCTGGAATTTCTTCAGCAGTGAACTG
GGCAAAGTGCGTAAGGCAGTGGCCGCCGGCCATGCGAGTGCCGATTTGGA
GGAGTCCATTAACCAGGTGCTGCTCCAAGGCGCCGAGCACAAGCGCTCCC
TGCTGAGCGATATGGAGCGGATGCGTCAGTCCGATGGCTACGAGGCCTGG
CGACACAAGGAGGCACGGGATTTGAGCGATTTGGTACAGCGGCGCCTGCA
CCATCTACAGAATCCCAGTGATTGCCAGAATGCTCGCAAGCTGGTCTGTA
AGCTCAACAAGGGCTGTGGCTACGGCTGCCAACTGCACCATGTGGTGTAT
TGCTTTATAGTGGCCTACGCCACCGAGCGGACGCTCATCTTAAAATCCCG
CGGATGGCGGTATCACAAAGGCGGCT
BS07452.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2448-PA | 1860 | FucT6-RA | 1..910 | 17..926 | 4525 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:20:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FucT6-RA | 2795 | CG2448-RA | 504..1414 | 16..926 | 4540 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:20:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11708244..11708796 | 812..260 | 2765 | 100 | Minus |
| X | 23542271 | X | 11709203..11709448 | 261..16 | 1230 | 100 | Minus |
| X | 23542271 | X | 11708021..11708137 | 926..810 | 570 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 04:20:18 has no hits.
BS07452.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:18 Download gff for
BS07452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FucT6-PA | 1..910 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:03:37 Download gff for
BS07452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2448-PA | 1..910 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:47:56 Download gff for
BS07452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FucT6-RA | 501..1414 | 13..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:22:59 Download gff for
BS07452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FucT6-RA | 501..1414 | 13..926 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:22:59 Download gff for
BS07452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11708021..11708135 | 812..926 | 99 | <- | Minus |
| X | 11708245..11708794 | 262..811 | 100 | <- | Minus |
| X | 11709203..11709451 | 13..261 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:47:56 Download gff for
BS07452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11602054..11602168 | 812..926 | 99 | <- | Minus |
| arm_X | 11602278..11602827 | 262..811 | 100 | <- | Minus |
| arm_X | 11603236..11603484 | 13..261 | 99 | | Minus |
BS07452.complete Sequence
1892 bp assembled on 2008-01-02
GenBank Submission: FJ635866
> BS07452.complete
GAAGTTATCAGTCGACATGCTGCTGGTGCGTCAGCTATTCGGGGCTTCGG
CCAACTCCTGGGCACGCGCCCTCATCATATTCGTACTGGCCTGGATCGGG
TTGGTCTACGTGTTCGTGGTCAAGCTGACCAATACTCAGGGCCAGCAGGC
GGCCGGGGAGAGTGAGCTGAACGCCCGTCGCATATCACAGGCGCTCCAGA
TGCTGGAGCACACGAGACAGCGCAATGAGGAGCTTAAACAGCTCATCGAC
GAGTTGATGAGTGACCAACTGGACAAGCAGAGCGCAATGAAACTGGTGCA
AAGGCTGGAGAACGATGCGCTAAATCCAAAGCTGGCGCCCGAGGTCGCCG
GCCCGGAACCAGAATCCATGTTCGAGTCCGCCCCCGCTGATCTGCGCGGT
TGGAATAATGTGGCCGAGGGAGCGCCCAATGATCTGGAGGCCGGTGTTCC
GGATCATGGCGAATTCGAGCCCAGCCTAGAGTACGAGTTCACGCGCAGAC
GCATCCAGACGAACATCGGTGAGATCTGGAATTTCTTCAGCAGTGAACTG
GGCAAAGTGCGTAAGGCAGTGGCCGCCGGCCATGCGAGTGCCGATTTGGA
GGAGTCCATTAACCAGGTGCTGCTCCAAGGCGCCGAGCACAAGCGCTCCC
TGCTGAGCGATATGGAGCGGATGCGTCAGTCCGATGGCTACGAGGCCTGG
CGACACAAGGAGGCACGGGATTTGAGCGATTTGGTACAGCGGCGCCTGCA
CCATCTACAGAATCCCAGTGATTGCCAGAATGCTCGCAAGCTGGTCTGTA
AGCTCAACAAGGGCTGTGGCTACGGCTGCCAACTGCACCATGTGGTGTAT
TGCTTTATAGTGGCCTACGCCACCGAGCGGACGCTCATCTTAAAATCCCG
CGGATGGCGGTATCACAAGGGCGGCTGGGAGGAGGTGTTCCAACCGGTGT
CCAACAGCTGCCATGATGCGGGCACCGCCAACACATACAATTGGCCGGGC
AAGCCGAACACCCAGGTGCTGGTGTTGCCCATCATTGACTCGCTGATGCC
GAGACCGCCGTACCTGCCGCTCGCCGTTCCCGAGGATCTGGCGCCGAGAC
TTAAGCGTCTGCATGGAGACCCCATCGTTTGGTGGGTGGGTCAGTTCCTT
AAGTATTTGCTCCGACCGCAACCAACGACGCGGGATTTTCTTACCTCTGG
CATGCGCAATTTGGGTTGGGAGCGTCCCATTGTTGGCGTTCATGTCCGTC
GCACGGACAAAGTGGGCACAGAAGCGGCCTGCCACAGTGTGGAGGAGTAT
ATGACCTATGTCGAGGACTACTACCGCACGCTGGAGGTAAACGGCAGCAC
TGTGGCTCGCCGGATTTTCCTCGCATCGGATGATGCCCAGGTTATTGAGG
AGGCGCGCCGAAAGTACCCGCAGTACCAGATCATTGGTGATCCGGAGGTG
GCGCGCATGGCGTCCGTATCCACACGATACACGGACACCGCCCTGAACGG
GATCATTCTGGATATCCACCTGCTTTCCATGTCCGATCATCTGGTGTGCA
CCTTCTCGTCGCAGGTGTGTCGCGTGGCCTACGAGATAATGCAGACGATG
TATCCGGATGCAGCGCATCGGTTCAAGTCGCTGGACGACATATACTACTA
CGGTGGCCAGAATGCGCACAATCGCCGCGTCGTTATCGCCCACAAGCCGC
GCACGCACGAGGATCTACAGCTGCGTGTTGGTGACCTCGTCTCGGTGGCT
GGTAACCATTGGGATGGCAATTCCAAGGGCAAGAATACCCGCACCAACCA
GGGCGGCCTATTCCCCTCGTTCAAGGTGGAGGAGAAGGTGGACACCGCCA
AGCTGCCTCTCTATGCGGGCATTTAGAAGCTTTCTAGACCAT
BS07452.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:19:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FucT6-RA | 1860 | CG2448-PA | 1..1860 | 17..1876 | 9300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:19:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FucT6-RA | 2795 | CG2448-RA | 504..2364 | 16..1876 | 9305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:19:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11707006..11707646 | 1876..1236 | 3205 | 100 | Minus |
| X | 23542271 | X | 11708244..11708796 | 812..260 | 2765 | 100 | Minus |
| X | 23542271 | X | 11707711..11708137 | 1236..810 | 2135 | 100 | Minus |
| X | 23542271 | X | 11709203..11709448 | 261..16 | 1230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:19:38 has no hits.
BS07452.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:30 Download gff for
BS07452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FucT6-RA | 1..1860 | 17..1876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:36:56 Download gff for
BS07452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FucT6-RA | 500..2372 | 13..1885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:02 Download gff for
BS07452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FucT6-RA | 505..2364 | 17..1876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:30 Download gff for
BS07452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FucT6-RA | 500..2372 | 13..1885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:29 Download gff for
BS07452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FucT6-RA | 505..2364 | 17..1876 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:29 Download gff for
BS07452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11707006..11707645 | 1237..1876 | 100 | <- | Minus |
| X | 11707711..11708135 | 812..1236 | 100 | <- | Minus |
| X | 11708245..11708794 | 262..811 | 100 | <- | Minus |
| X | 11709203..11709447 | 17..261 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:02 Download gff for
BS07452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11601039..11601678 | 1237..1876 | 100 | <- | Minus |
| arm_X | 11601744..11602168 | 812..1236 | 100 | <- | Minus |
| arm_X | 11602278..11602827 | 262..811 | 100 | <- | Minus |
| arm_X | 11603236..11603480 | 17..261 | 100 | | Minus |
BS07452.pep Sequence
Translation from 16 to 1875
> BS07452.pep
MLLVRQLFGASANSWARALIIFVLAWIGLVYVFVVKLTNTQGQQAAGESE
LNARRISQALQMLEHTRQRNEELKQLIDELMSDQLDKQSAMKLVQRLEND
ALNPKLAPEVAGPEPESMFESAPADLRGWNNVAEGAPNDLEAGVPDHGEF
EPSLEYEFTRRRIQTNIGEIWNFFSSELGKVRKAVAAGHASADLEESINQ
VLLQGAEHKRSLLSDMERMRQSDGYEAWRHKEARDLSDLVQRRLHHLQNP
SDCQNARKLVCKLNKGCGYGCQLHHVVYCFIVAYATERTLILKSRGWRYH
KGGWEEVFQPVSNSCHDAGTANTYNWPGKPNTQVLVLPIIDSLMPRPPYL
PLAVPEDLAPRLKRLHGDPIVWWVGQFLKYLLRPQPTTRDFLTSGMRNLG
WERPIVGVHVRRTDKVGTEAACHSVEEYMTYVEDYYRTLEVNGSTVARRI
FLASDDAQVIEEARRKYPQYQIIGDPEVARMASVSTRYTDTALNGIILDI
HLLSMSDHLVCTFSSQVCRVAYEIMQTMYPDAAHRFKSLDDIYYYGGQNA
HNRRVVIAHKPRTHEDLQLRVGDLVSVAGNHWDGNSKGKNTRTNQGGLFP
SFKVEEKVDTAKLPLYAGI*
BS07452.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:18:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FucT6-PA | 619 | CG2448-PA | 1..619 | 1..619 | 3267 | 100 | Plus |
