Clone Sequence Records
BS07453.3prime Sequence
950 bp (861 high quality bases) assembled on 2006-01-06
> BS07453.3prime
ATGGTCTAGAAAGCTTCTAGAAGGGCTCCTCCTGCGCCTGTGTGGCAGCA
TCACTCGGCTGCTCGGCGAACATGCGCTGTCGACGGCACACAGTTGGCGT
TGGCATATCGTCCGCATTGCTAATGGAATCGCAATCGTAGTGACTGGGCA
CCTCGGGTGGCGGAGCATCGGCATAGTCGGTTGGGATGTCGGAAGCGGCG
CCGAACCACGACAGCATCATTGAGACCTCATGCCACCTACTCGAATTGGA
CTGCGAATCCAGCTGCAGTTCATCGTTTAGCGGCGGCGGCACCGTTCCAC
TTGGCTGATGCGATCCAATGGTGGACGATTGGGCGCCACCAACAACCCGA
ACCCAATTGCTGCCGCTGGCCAGCGGAGATAGGTGCGTCTTTCGATACGA
ATCAATGGAGCTTTTGACTCGACGCATATCCAGCGGTGATGTGGCTGCCA
ATGTGGATCTTTCCTTGTTCAGCGTCACCAGGCAGGACTGCCGCTCCGGC
TCCTCATCCGCGTCGCCATCACGCCGATGGCGTGTGTATTCCAGCTCCTC
CTCACCATCCAGATCCTCGTCCATCGATTGCGCCAGACAGTCGTTCGAAT
GGAAGCTTTGCTCCGAGTACGACTGCCCCTCGCATTCCATCTGCAAATGA
TCGCCCTGCTCCGTCGATCGCTCACTGGTCACCGCCAGCAGTTCCTGCTG
TTGTTGGCAATTGTCCGTGTATTCATGCCTGGGCCTGCTTGTGACCGGCT
GCTGCGCTATGGACACCTGGTAGGAATTGGATGACGGTGCCGCCGGTGAT
GCTACTGTCGCCGCCAACGCTTGCTGCTGTTCATGTCTGCGCTGGCGTTG
GATGAGCATGCGTTGGATATTCTGTCGCGACTGATCGTTGCCATAGGAGA
TGCGCTTGGCGGCAAGTCGCGACGCTCCACGCCGCCCGGGCTGCATCGTT
BS07453.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4198-PA | 1434 | CG4198-RA | 538..1434 | 913..17 | 4485 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:31:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4198-RA | 1867 | CG4198-RA | 674..1609 | 950..17 | 4600 | 99.6 | Minus |
| CG4198-RB | 1864 | CG4198-RB | 674..1606 | 950..17 | 4545 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:31:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5314210..5314932 | 739..17 | 3615 | 100 | Minus |
| X | 23542271 | X | 5313931..5314145 | 950..738 | 945 | 98.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:31:07 has no hits.
BS07453.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:19 Download gff for
BS07453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4198-PA | 499..1434 | 17..950 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:03:38 Download gff for
BS07453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4198-PA | 499..1434 | 17..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:44:50 Download gff for
BS07453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4198-RA | 674..1614 | 13..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:03:19 Download gff for
BS07453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4198-RA | 674..1614 | 13..950 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:03:19 Download gff for
BS07453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5313931..5314145 | 738..950 | 98 | -> | Minus |
| X | 5314212..5314937 | 13..737 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:44:50 Download gff for
BS07453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5207964..5208178 | 738..950 | 98 | -> | Minus |
| arm_X | 5208245..5208970 | 13..737 | 99 | | Minus |
BS07453.5prime Sequence
913 bp (807 high quality bases) assembled on 2006-01-06
> BS07453.5prime
GAAGTTATCAGTCGACATGTCGTATCAGATCAAATCGACGCCCTACTTTC
GTCGCATGTTCAACGAGAGCAAGAAGAATGGCCAACTGCAGCGTCTGCGT
GATGAGTACGAGCGCATCCAGGAGTTCAACGATCGCACCATCGAAATGAA
GATGCGACAGGTGCGATTAAAGCGGCTATTTCGCGAGATCGAGGTAATTA
AGGTGGCTGGCGGGGCGGCCGGTGGCGCCAGCGGTGGCGGCACATCGACG
GCATCATCGCCATCGAATGTTGACCAATCGTTTGGTTTAGCCGGCGGACG
CGTTACCCGCCGGAGACGGCAACAGGCACACGGTGCTATCACGCTGGCTA
GCAGCACGCCCCAGCAGCGGATGCACAAACAGCGCATAGAGACGCTGGCA
CGCGCACGCCAACTGGGCCAGGAGATCTCGCGTCGGAATGGCCTAATGGC
CGAGGCCGGCACCGGCGGTTTCCTGCGCAGCGAACTCCGGATGACGGCCA
AGCTGCAGGCGGCGAACGATGCACGCCGGGCGGCCGTGGAGCGTCGCGAC
TTGGCCGCCAAGCGCATCTCCTATGGCAACGATCAGTCGCGACAGAATAT
CCAACGCATGCTCATCCAACGCCAGCGCAGACATGAACAGCAGCAAGCGT
TGGCGGCGACAGTAGCATCACCGGCGGCACCGTCATCCAATTCCTACCAG
GTGTCCATAGCGCAGCAGCCGGTCACAAGCAGGCCCAGGCATGAATACAC
GGACAATTGCCAACAACAGCAGGAACTGCTGGCGGTGACCAGTGAGCGAT
CGACGGAGCAGGGCGATCATTTGCAGATGGGATGCGAGGGGCAGTCGTAC
TCGGAGCAAAGCTTCCATTCGAACGACTGTCTGGCGCAATCGATGGACGA
GGATCTGGATGGT
BS07453.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4198-PA | 1434 | CG4198-RA | 1..897 | 17..913 | 4460 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:52:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4198-RA | 1867 | CG4198-RA | 175..1072 | 16..913 | 4475 | 99.9 | Plus |
| CG4198-RB | 1864 | CG4198-RB | 175..1069 | 16..913 | 4420 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:52:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5313432..5314145 | 16..729 | 3570 | 100 | Plus |
| X | 23542271 | X | 5314210..5314395 | 728..913 | 915 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-04 01:52:13 has no hits.
BS07453.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:20 Download gff for
BS07453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4198-PA | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:03:40 Download gff for
BS07453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4198-PA | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:45:11 Download gff for
BS07453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4198-RA | 167..1072 | 9..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:32:33 Download gff for
BS07453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4198-RA | 167..1072 | 9..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:32:33 Download gff for
BS07453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5313424..5314145 | 9..729 | 99 | -> | Plus |
| X | 5314212..5314395 | 730..913 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:45:11 Download gff for
BS07453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5207457..5208178 | 9..729 | 99 | -> | Plus |
| arm_X | 5208245..5208428 | 730..913 | 99 | | Plus |
BS07453.complete Sequence
1466 bp (1466 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635867
> BS07453.complete
GAAGTTATCAGTCGACATGTCGTATCAGATCAAATCGACGCCCTACTTTC
GTCGCATGTTCAACGAGAGCAAGAAGAATGGCCAACTGCAGCGTCTGCGT
GATGAGTACGAGCGCATCCAGGAGTTCAACGATCGCACCATCGAAATGAA
GATGCGACAGGTGCGATTAAAGCGGCTATTTCGCGAGATCGAGGTAATTA
AGGTGGCTGGCGGGGCGGCCGGTGGCGCCAGCGGTGGCGGCACATCGACG
GCATCATCGCCATCGAATGTTGACCAATCGTTTGGTTTAGCCGGCGGACG
CGTTACCCGCCGGAGACGGCAACAGGCACACGGTGCTATCACGCTGGCTA
GCAGCACGCCCCAGCAGCGGATGCACAAACAGCGCATAGAGACGCTGGCA
CGCGCACGCCAACTGGGCCAGGAGATCTCGCGTCGGAATGGCCTAATGGC
CGAGGCCGGCACCGGCGGTTTCCTGCGCAGCGAACTCCGGATGACGGCCA
AGCTGCAGGCGGCGAACGATGCACGCCGGGCGGCCGTGGAGCGTCGCGAC
TTGGCCGCCAAGCGCATCTCCTATGGCAACGATCAGTCGCGACAGAATAT
CCAACGCATGCTCATCCAACGCCAGCGCAGACATGAACAGCAGCAAGCGT
TGGCGGCGACAGTAGCATCACCGGCGGCACCGTCATCCAATTCCTACCAG
GTGTCCATAGCGCAGCAGCCGGTCACAAGCAGGCCCAGGCATGAATACAC
GGACAATTGCCAACAACAGCAGGAACTGCTGGCGGTGACCAGTGAGCGAT
CGACGGAGCAGGGCGATCATTTGCAGATGGAATGCGAGGGGCAGTCGTAC
TCGGAGCAAAGCTTCCATTCGAACGACTGTCTGGCGCAATCGATGGACGA
GGATCTGGATGGTGAGGAGGAGCTGGAATACACACGCCATCGGCGTGATG
GCGACGCGGATGAGGAGCCGGAGCGGCAGTCCTGCCTGGTGACGCTGAAC
AAGGAAAGATCCACATTGGCAGCCACATCACCGCTGGATATGCGTCGAGT
CAAAAGCTCCATTGATTCGTATCGAAAGACGCACCTATCTCCGCTGGCCA
GCGGCAGCAATTGGGTTCGGGTTGTTGGTGGCGCCCAATCGTCCACCATT
GGATCGCATCAGCCAAGTGGAACGGTGCCGCCGCCGCTAAACGATGAACT
GCAGCTGGATTCGCAGTCCAATTCGAGTAGGTGGCATGAGGTCTCAATGA
TGCTGTCGTGGTTCGGCGCCGCTTCCGACATCCCAACCGACTATGCCGAT
GCTCCGCCACCCGAGGTGCCCAGTCACTACGATTGCGATTCCATTAGCAA
TGCGGACGATATGCCAACGCCAACTGTGTGCCGTCGACAGCGCATGTTCG
CCGAGCAGCCGAGTGATGCTGCCACACAGGCGCAGGAGGAGCCCTTCTAG
AAGCTTTCTAGACCAT
BS07453.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:36:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4198-RA | 1434 | CG4198-PA | 1..1434 | 17..1450 | 7170 | 100 | Plus |
| CG4198-RB | 1431 | CG4198-PB | 1..1431 | 17..1450 | 7090 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:36:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4198-RA | 1867 | CG4198-RA | 175..1609 | 16..1450 | 7175 | 100 | Plus |
| CG4198-RB | 1864 | CG4198-RB | 175..1606 | 16..1450 | 7095 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:36:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5314210..5314932 | 728..1450 | 3615 | 100 | Plus |
| X | 23542271 | X | 5313432..5314145 | 16..729 | 3570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:36:46 has no hits.
BS07453.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:58 Download gff for
BS07453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4198-RA | 1..1434 | 17..1450 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:47:04 Download gff for
BS07453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4198-RA | 159..1606 | 9..1454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:01 Download gff for
BS07453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4198-RA | 176..1609 | 17..1450 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:58 Download gff for
BS07453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4198-RA | 159..1606 | 9..1454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:53 Download gff for
BS07453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4198-RA | 176..1609 | 17..1450 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:53 Download gff for
BS07453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5313433..5314145 | 17..729 | 100 | -> | Plus |
| X | 5314212..5314932 | 730..1450 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:01 Download gff for
BS07453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5207466..5208178 | 17..729 | 100 | -> | Plus |
| arm_X | 5208245..5208965 | 730..1450 | 100 | | Plus |
BS07453.pep Sequence
Translation from 16 to 1449
> BS07453.pep
MSYQIKSTPYFRRMFNESKKNGQLQRLRDEYERIQEFNDRTIEMKMRQVR
LKRLFREIEVIKVAGGAAGGASGGGTSTASSPSNVDQSFGLAGGRVTRRR
RQQAHGAITLASSTPQQRMHKQRIETLARARQLGQEISRRNGLMAEAGTG
GFLRSELRMTAKLQAANDARRAAVERRDLAAKRISYGNDQSRQNIQRMLI
QRQRRHEQQQALAATVASPAAPSSNSYQVSIAQQPVTSRPRHEYTDNCQQ
QQELLAVTSERSTEQGDHLQMECEGQSYSEQSFHSNDCLAQSMDEDLDGE
EELEYTRHRRDGDADEEPERQSCLVTLNKERSTLAATSPLDMRRVKSSID
SYRKTHLSPLASGSNWVRVVGGAQSSTIGSHQPSGTVPPPLNDELQLDSQ
SNSSRWHEVSMMLSWFGAASDIPTDYADAPPPEVPSHYDCDSISNADDMP
TPTVCRRQRMFAEQPSDAATQAQEEPF*
BS07453.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:28:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4198-PA | 477 | CG4198-PA | 1..477 | 1..477 | 2447 | 100 | Plus |
| CG4198-PB | 476 | CG4198-PB | 1..476 | 1..477 | 2431 | 99.8 | Plus |
