Clone Sequence Records
BS07454.3prime Sequence
895 bp (799 high quality bases) assembled on 2006-01-06
> BS07454.3prime
ATGGTCTAGAAAGCTTTTAGATCAATTGATTTGGCTTATACAAGTTGTCC
CAAATTTGTAGTTTTTCATACTCGGGCAAATCTATTATTGTAACATCGCT
GCTGATGTTAATAACACGCTTGGGATCATTCTTGGTAGATGGTTTCCACT
CCAAGTGGCCAATCTCTGGGCAATTGGGATTGGAGGTCGCAGCGAATGCC
GTCCAAATGCCAATCATTCTTTCGATAGTTCGATATTCCGCAGATGTCTT
ATCCAGTTTCCAAGAGCCCGCGTTCCGGAACAAATAGCTCAGGTCATCGG
CGTGGGCCACACCAGTCTTAATTTTATCTCCACAGAATTTAGCCCGGTAG
AAGTTGAAGTTCGGCGAATCAAAGTCGAAGCGATAGTAATATGTGGGTGC
TTTTGCATAGGTAAGTCTGGCGTTAAAGGTGCGATTAAAGCCGTGCCAAA
ATATTTTGTAGGAATAAAAATCGAGCATATTCAAAAGTAGCTCTGAGCTG
GGTGGCGAATATCCGAAGTAGGCCTTCATCAGACGCTGGCTGTACTCCAG
ATTCTCTTTCTCGCTACTGACCGTACGCACATCAACCGGCACCAGCCTGG
TGGGATCCTGGCTTAGGCTATCCAATGCCTTGAGATTGGCCGACACGGCT
GGATACATGAAAAGACCCTCGAAGGAGGTTCCACCCAACATGACTGGAAA
ATTGTTGGACCACGCATCTCGGGCCATCTCTACTGGCGGTTTGGGCACCA
CGCAATCCTCACCCACATATGCCTCCACAGTGGGTCCAAAGGCGAAGAGC
AGACCGTTCCTCCGGTGCTCGGGTGTTAGCAAATTATGGTTCACCAAATC
TCTAGCCGGAACTCCTTGGAGATATTCCAGTACCTTGGCGTCGTC
BS07454.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1089-PA | 1629 | alpha-Est5-RA | 751..1629 | 895..17 | 4395 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est5-RA | 1754 | CG1089-RA | 841..1719 | 895..17 | 4395 | 100 | Minus |
alpha-Est5-RB | 2490 | CG1089-RB | 844..1722 | 895..17 | 4395 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7534264..7534716 | 17..469 | 2265 | 100 | Plus |
3R | 32079331 | 3R | 7534802..7535227 | 470..895 | 2130 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:21:22 has no hits.
BS07454.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:21 Download gff for
BS07454.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1089-PA | 751..1629 | 17..895 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:03:41 Download gff for
BS07454.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1089-PA | 751..1629 | 17..895 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:37:07 Download gff for
BS07454.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est5-RB | 844..1724 | 13..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:45:12 Download gff for
BS07454.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est5-RB | 844..1724 | 13..895 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:45:12 Download gff for
BS07454.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7534262..7534716 | 13..469 | 99 | <- | Plus |
3R | 7534802..7535227 | 470..895 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:37:07 Download gff for
BS07454.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3359984..3360438 | 13..469 | 99 | <- | Plus |
arm_3R | 3360524..3360949 | 470..895 | 100 | | Plus |
BS07454.5prime Sequence
947 bp (773 high quality bases) assembled on 2006-01-06
> BS07454.5prime
GAAGTTATCAGTCGACATGATGTCAAAGGAAAGCCTGGAAACTTGCGAAC
TTACTCTGCCCGTGGGCCAAATTAAGGGCGTCAAACGCCTTAGTCTTTAC
GACGATCCCTACTTCAGCTTCGAGAAGATCCCCTTTGCGAAGCCCCCGTT
GGGAGAACTGAGATTTAGGGCCCCCGTGCCAGCAGATCCGTGGAGCGGCG
TTCTGGACTGCACCCACTATGCAGAGAAGCCAACCCAGAGGGGCTTACTG
ACCCGTGAAATCGAAGGCGGCGAGGATTGTCTGTATCTGAACGTCTATTC
CAAGCAGCTGAAAAGTGAGAAGCCATTGCCGGTGATGGTGTACATTTATG
GCGGGGCCTTCACCGTAGGAGAGGCCACCCGCGAATTGTACGGCCCGGAC
TATTTTATGACCAAAGATGTTGTTCTTGTGACGCTTAACTATCGCGTGGA
TTGTTTGGGATTCCTATCGCTCAAGGACCCGAGTCTGAAAGTTCCCGGAA
ACGCAGGACTCAAGGACCAAGTGCTAGCTCTCAAGTGGGTCAAGCAGTAC
ATCTCCAACTTCAATGGCGATGATAGTAATATTACGGTATTCGGAGAGAG
CGCCGGAGGTTGCTCCACCCACTTCATGATGTGTACGGAACAGACCAGGG
GACTGTTTCACAAGGCCATTCCCATGTCAGGAACAGTGCACAACTACTGG
GCCAATAATCCGGCCGAAGACTTTGCCTTTCGCCTGGCTCAGCAGAATGG
TTTCACTGGCGAANATGACGACGCCNAGGTACTGGAATATCTCCAAGGAG
TTCCGGCTAGAGATTTGGTGAACCATAATTTGCTAACACCCGAGCACCGG
AGGAACGGTCTGCTCTTCGCCTTTGGACCACTGTGGAGGCATATGTGGGT
GAGGATTGCGTGGTGCCAAACCCGCAGTAGAGATGGCCCGAGATGCG
BS07454.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1089-PA | 1629 | alpha-Est5-RA | 1..863 | 17..879 | 4277 | 99.7 | Plus |
CG1089-PA | 1629 | alpha-Est5-RA | 863..902 | 878..917 | 200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:20:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est5-RA | 1754 | CG1089-RA | 91..1023 | 17..947 | 4563 | 99.4 | Plus |
alpha-Est5-RB | 2490 | CG1089-RB | 91..1026 | 17..947 | 4523 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:19:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7535045..7535536 | 947..458 | 2308 | 98.8 | Minus |
3R | 32079331 | 3R | 7535946..7536221 | 307..32 | 1380 | 100 | Minus |
3R | 32079331 | 3R | 7535732..7535885 | 459..306 | 770 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 18:20:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 1063..1101 | 295..333 | 114 | 76.9 | Plus |
BS07454.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:22 Download gff for
BS07454.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1089-PA | 1..933 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:03:43 Download gff for
BS07454.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1089-PA | 1..933 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:26:57 Download gff for
BS07454.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est5-RA | 91..1023 | 17..947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:49:22 Download gff for
BS07454.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est5-RA | 91..1023 | 17..947 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:49:22 Download gff for
BS07454.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7535045..7535535 | 459..947 | 98 | <- | Minus |
3R | 7535733..7535883 | 308..458 | 100 | <- | Minus |
3R | 7535946..7536219 | 34..307 | 100 | <- | Minus |
3R | 7536284..7536300 | 17..33 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:26:57 Download gff for
BS07454.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3360767..3361257 | 459..947 | 98 | <- | Minus |
arm_3R | 3361455..3361605 | 308..458 | 100 | <- | Minus |
arm_3R | 3361668..3361941 | 34..307 | 100 | <- | Minus |
arm_3R | 3362006..3362022 | 17..33 | 100 | | Minus |
BS07454.complete Sequence
1661 bp assembled on 2008-01-02
GenBank Submission: FJ635868
> BS07454.complete
GAAGTTATCAGTCGACATGATGTCAAAGGAAAGCCTGGAAACTTGCGAAC
TTACTCTGCCCGTGGGCCAAATTAAGGGCGTCAAACGCCTTAGTCTTTAC
GACGATCCCTACTTCAGCTTCGAGAAGATCCCCTTTGCGAAGCCCCCGTT
GGGAGAACTGAGATTTAGGGCCCCCGTGCCAGCAGATCCGTGGAGCGGCG
TTCTGGACTGCACCCACTATGCAGAGAAGCCAACCCAGAGGGGCTTACTG
ACCCGTGAAATCGAAGGCGGCGAGGATTGTCTGTATCTGAACGTCTATTC
CAAGCAGCTGAAAAGTGAGAAGCCATTGCCGGTGATGGTGTACATTTATG
GCGGGGCCTTCACCGTAGGAGAGGCCACCCGCGAATTGTACGGCCCGGAC
TATTTTATGACCAAAGATGTTGTTCTTGTGACGCTTAACTATCGCGTGGA
TTGTTTGGGATTCCTATCGCTCAAGGACCCGAGTCTGAAAGTTCCCGGAA
ACGCAGGACTCAAGGACCAAGTGCTAGCTCTCAAGTGGGTCAAGCAGTAC
ATCTCCAACTTCAATGGCGATGATAGTAATATTACGGTATTCGGAGAGAG
CGCCGGAGGTTGCTCCACCCACTTCATGATGTGTACGGAACAGACCAGGG
GACTGTTTCACAAGGCCATTCCCATGTCAGGAACAGTGCACAACTACTGG
GCCAATAATCCGGCCGAAGACTTTGCCTTTCGCCTGGCTCAGCAGAATGG
TTTCACTGGCGAAAATGACGACGCCAAGGTACTGGAATATCTCCAAGGAG
TTCCGGCTAGAGATTTGGTGAACCATAATTTGCTAACACCCGAGCACCGG
AGGAACGGTCTGCTCTTCGCCTTTGGACCCACTGTGGAGGCATATGTGGG
TGAGGATTGCGTGGTGCCCAAACCGCCAGTAGAGATGGCCCGAGATGCGT
GGTCCAACAATTTTCCAGTCATGTTGGGTGGAACCTCCTTCGAGGGTCTT
TTCATGTATCCAGCCGTGTCGGCCAATCTCAAGGCATTGGATAGCCTAAG
CCAGGATCCCACCAGGCTGGTGCCGGTTGATGTGCGTACGGTCAGTAGCG
AGAAAGAGAATCTGGAGTACAGCCAGCGTCTGATGAAGGCCTACTTCGGA
TATTCGCCACCCAGCTCAGAGCTACTTTTGAATATGCTCGATTTTTATTC
CTACAAAATATTTTGGCACGGCTTTAATCGCACCTTTAACGCCAGACTTA
CCTATGCAAAAGCACCCACATATTACTATCGCTTCGACTTTGATTCGCCG
AACTTCAACTTCTACCGGGCTAAATTCTGTGGAGATAAAATTAAGACTGG
TGTGGCCCACGCCGATGACCTGAGCTATTTGTTCCGGAACGCGGGCTCTT
GGAAACTGGATAAGACATCTGCGGAATATCGAACTATCGAAAGAATGATT
GGCATTTGGACGGCATTCGCTGCGACCTCCAATCCCAATTGCCCAGAGAT
TGGCCACTTGGAGTGGAAACCATCTACCAAGAATGATCCCAAGCGTGTTA
TTAACATCAGCAGCGATGTTACAATAATAGATTTGCCCGAGTATGAAAAA
CTACAAATTTGGGACAACTTGTATAAGCCAAATCAATTGATCTAAAAGCT
TTCTAGACCAT
BS07454.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:19:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est5-RA | 1629 | CG1089-PA | 1..1629 | 17..1645 | 8145 | 100 | Plus |
alpha-Est5-RB | 1632 | CG1089-PB | 1..1632 | 17..1645 | 8080 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:19:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est5-RA | 1754 | CG1089-RA | 91..1719 | 17..1645 | 8145 | 100 | Plus |
alpha-Est5-RB | 2490 | CG1089-RB | 91..1722 | 17..1645 | 8080 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:19:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7534802..7535536 | 1192..458 | 3675 | 100 | Minus |
3R | 32079331 | 3R | 7534264..7534716 | 1645..1193 | 2265 | 100 | Minus |
3R | 32079331 | 3R | 7535946..7536221 | 307..32 | 1380 | 100 | Minus |
3R | 32079331 | 3R | 7535732..7535885 | 459..306 | 770 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 01:19:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 1063..1101 | 295..333 | 114 | 76.9 | Plus |
BS07454.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:31 Download gff for
BS07454.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est5-RA | 1..1629 | 17..1645 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:44 Download gff for
BS07454.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est5-RA | 226..1852 | 17..1643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:05 Download gff for
BS07454.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est5-RA | 91..1717 | 17..1643 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:31 Download gff for
BS07454.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est5-RA | 226..1856 | 17..1649 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:16 Download gff for
BS07454.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est5-RA | 91..1717 | 17..1643 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:16 Download gff for
BS07454.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7534266..7534716 | 1193..1643 | 100 | <- | Minus |
3R | 7534802..7535535 | 459..1192 | 100 | <- | Minus |
3R | 7535733..7535883 | 308..458 | 100 | <- | Minus |
3R | 7535946..7536219 | 34..307 | 100 | <- | Minus |
3R | 7536284..7536300 | 17..33 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:05 Download gff for
BS07454.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3361455..3361605 | 308..458 | 100 | <- | Minus |
arm_3R | 3361668..3361941 | 34..307 | 100 | <- | Minus |
arm_3R | 3362006..3362022 | 17..33 | 100 | | Minus |
arm_3R | 3359988..3360438 | 1193..1643 | 100 | <- | Minus |
arm_3R | 3360524..3361257 | 459..1192 | 100 | <- | Minus |
BS07454.pep Sequence
Translation from 16 to 1644
> BS07454.pep
MMSKESLETCELTLPVGQIKGVKRLSLYDDPYFSFEKIPFAKPPLGELRF
RAPVPADPWSGVLDCTHYAEKPTQRGLLTREIEGGEDCLYLNVYSKQLKS
EKPLPVMVYIYGGAFTVGEATRELYGPDYFMTKDVVLVTLNYRVDCLGFL
SLKDPSLKVPGNAGLKDQVLALKWVKQYISNFNGDDSNITVFGESAGGCS
THFMMCTEQTRGLFHKAIPMSGTVHNYWANNPAEDFAFRLAQQNGFTGEN
DDAKVLEYLQGVPARDLVNHNLLTPEHRRNGLLFAFGPTVEAYVGEDCVV
PKPPVEMARDAWSNNFPVMLGGTSFEGLFMYPAVSANLKALDSLSQDPTR
LVPVDVRTVSSEKENLEYSQRLMKAYFGYSPPSSELLLNMLDFYSYKIFW
HGFNRTFNARLTYAKAPTYYYRFDFDSPNFNFYRAKFCGDKIKTGVAHAD
DLSYLFRNAGSWKLDKTSAEYRTIERMIGIWTAFAATSNPNCPEIGHLEW
KPSTKNDPKRVINISSDVTIIDLPEYEKLQIWDNLYKPNQLI*
BS07454.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:18:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est5-PA | 542 | CG1089-PA | 1..542 | 1..542 | 2910 | 100 | Plus |
alpha-Est5-PB | 543 | CG1089-PB | 1..543 | 1..542 | 2898 | 99.8 | Plus |
alpha-Est2-PB | 566 | CG2505-PB | 32..565 | 9..541 | 1408 | 51.4 | Plus |
alpha-Est2-PA | 566 | CG2505-PA | 32..565 | 9..541 | 1408 | 51.4 | Plus |
CG6018-PA | 566 | CG6018-PA | 31..565 | 8..541 | 1393 | 51.1 | Plus |