Clone BS07454 Report

Search the DGRC for BS07454

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:54
Vector:pDNR-Dual
Associated Gene/Transcriptalpha-Est5-RA
Protein status:BS07454.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07454.3prime Sequence

895 bp (799 high quality bases) assembled on 2006-01-06

> BS07454.3prime
ATGGTCTAGAAAGCTTTTAGATCAATTGATTTGGCTTATACAAGTTGTCC
CAAATTTGTAGTTTTTCATACTCGGGCAAATCTATTATTGTAACATCGCT
GCTGATGTTAATAACACGCTTGGGATCATTCTTGGTAGATGGTTTCCACT
CCAAGTGGCCAATCTCTGGGCAATTGGGATTGGAGGTCGCAGCGAATGCC
GTCCAAATGCCAATCATTCTTTCGATAGTTCGATATTCCGCAGATGTCTT
ATCCAGTTTCCAAGAGCCCGCGTTCCGGAACAAATAGCTCAGGTCATCGG
CGTGGGCCACACCAGTCTTAATTTTATCTCCACAGAATTTAGCCCGGTAG
AAGTTGAAGTTCGGCGAATCAAAGTCGAAGCGATAGTAATATGTGGGTGC
TTTTGCATAGGTAAGTCTGGCGTTAAAGGTGCGATTAAAGCCGTGCCAAA
ATATTTTGTAGGAATAAAAATCGAGCATATTCAAAAGTAGCTCTGAGCTG
GGTGGCGAATATCCGAAGTAGGCCTTCATCAGACGCTGGCTGTACTCCAG
ATTCTCTTTCTCGCTACTGACCGTACGCACATCAACCGGCACCAGCCTGG
TGGGATCCTGGCTTAGGCTATCCAATGCCTTGAGATTGGCCGACACGGCT
GGATACATGAAAAGACCCTCGAAGGAGGTTCCACCCAACATGACTGGAAA
ATTGTTGGACCACGCATCTCGGGCCATCTCTACTGGCGGTTTGGGCACCA
CGCAATCCTCACCCACATATGCCTCCACAGTGGGTCCAAAGGCGAAGAGC
AGACCGTTCCTCCGGTGCTCGGGTGTTAGCAAATTATGGTTCACCAAATC
TCTAGCCGGAACTCCTTGGAGATATTCCAGTACCTTGGCGTCGTC

BS07454.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG1089-PA 1629 alpha-Est5-RA 751..1629 895..17 4395 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:21:25
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est5-RA 1754 CG1089-RA 841..1719 895..17 4395 100 Minus
alpha-Est5-RB 2490 CG1089-RB 844..1722 895..17 4395 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7534264..7534716 17..469 2265 100 Plus
3R 32079331 3R 7534802..7535227 470..895 2130 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:21:22 has no hits.

BS07454.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:21 Download gff for BS07454.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1089-PA 751..1629 17..895 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:03:41 Download gff for BS07454.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1089-PA 751..1629 17..895 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:37:07 Download gff for BS07454.3prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est5-RB 844..1724 13..895 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:45:12 Download gff for BS07454.3prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est5-RB 844..1724 13..895 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:45:12 Download gff for BS07454.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7534262..7534716 13..469 99 <- Plus
3R 7534802..7535227 470..895 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:37:07 Download gff for BS07454.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3359984..3360438 13..469 99 <- Plus
arm_3R 3360524..3360949 470..895 100   Plus

BS07454.5prime Sequence

947 bp (773 high quality bases) assembled on 2006-01-06

> BS07454.5prime
GAAGTTATCAGTCGACATGATGTCAAAGGAAAGCCTGGAAACTTGCGAAC
TTACTCTGCCCGTGGGCCAAATTAAGGGCGTCAAACGCCTTAGTCTTTAC
GACGATCCCTACTTCAGCTTCGAGAAGATCCCCTTTGCGAAGCCCCCGTT
GGGAGAACTGAGATTTAGGGCCCCCGTGCCAGCAGATCCGTGGAGCGGCG
TTCTGGACTGCACCCACTATGCAGAGAAGCCAACCCAGAGGGGCTTACTG
ACCCGTGAAATCGAAGGCGGCGAGGATTGTCTGTATCTGAACGTCTATTC
CAAGCAGCTGAAAAGTGAGAAGCCATTGCCGGTGATGGTGTACATTTATG
GCGGGGCCTTCACCGTAGGAGAGGCCACCCGCGAATTGTACGGCCCGGAC
TATTTTATGACCAAAGATGTTGTTCTTGTGACGCTTAACTATCGCGTGGA
TTGTTTGGGATTCCTATCGCTCAAGGACCCGAGTCTGAAAGTTCCCGGAA
ACGCAGGACTCAAGGACCAAGTGCTAGCTCTCAAGTGGGTCAAGCAGTAC
ATCTCCAACTTCAATGGCGATGATAGTAATATTACGGTATTCGGAGAGAG
CGCCGGAGGTTGCTCCACCCACTTCATGATGTGTACGGAACAGACCAGGG
GACTGTTTCACAAGGCCATTCCCATGTCAGGAACAGTGCACAACTACTGG
GCCAATAATCCGGCCGAAGACTTTGCCTTTCGCCTGGCTCAGCAGAATGG
TTTCACTGGCGAANATGACGACGCCNAGGTACTGGAATATCTCCAAGGAG
TTCCGGCTAGAGATTTGGTGAACCATAATTTGCTAACACCCGAGCACCGG
AGGAACGGTCTGCTCTTCGCCTTTGGACCACTGTGGAGGCATATGTGGGT
GAGGATTGCGTGGTGCCAAACCCGCAGTAGAGATGGCCCGAGATGCG

BS07454.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG1089-PA 1629 alpha-Est5-RA 1..863 17..879 4277 99.7 Plus
CG1089-PA 1629 alpha-Est5-RA 863..902 878..917 200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est5-RA 1754 CG1089-RA 91..1023 17..947 4563 99.4 Plus
alpha-Est5-RB 2490 CG1089-RB 91..1026 17..947 4523 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:19:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7535045..7535536 947..458 2308 98.8 Minus
3R 32079331 3R 7535946..7536221 307..32 1380 100 Minus
3R 32079331 3R 7535732..7535885 459..306 770 100 Minus
Blast to na_te.dros performed 2015-02-11 18:20:01
Subject Length Description Subject Range Query Range Score Percent Strand
Doc3-element 4740 Doc3-element DOC3 4740bp 1063..1101 295..333 114 76.9 Plus

BS07454.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:22 Download gff for BS07454.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1089-PA 1..933 17..947 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:03:43 Download gff for BS07454.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1089-PA 1..933 17..947 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:26:57 Download gff for BS07454.5prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est5-RA 91..1023 17..947 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:49:22 Download gff for BS07454.5prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est5-RA 91..1023 17..947 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:49:22 Download gff for BS07454.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7535045..7535535 459..947 98 <- Minus
3R 7535733..7535883 308..458 100 <- Minus
3R 7535946..7536219 34..307 100 <- Minus
3R 7536284..7536300 17..33 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:26:57 Download gff for BS07454.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3360767..3361257 459..947 98 <- Minus
arm_3R 3361455..3361605 308..458 100 <- Minus
arm_3R 3361668..3361941 34..307 100 <- Minus
arm_3R 3362006..3362022 17..33 100   Minus

BS07454.complete Sequence

1661 bp assembled on 2008-01-02

GenBank Submission: FJ635868

> BS07454.complete
GAAGTTATCAGTCGACATGATGTCAAAGGAAAGCCTGGAAACTTGCGAAC
TTACTCTGCCCGTGGGCCAAATTAAGGGCGTCAAACGCCTTAGTCTTTAC
GACGATCCCTACTTCAGCTTCGAGAAGATCCCCTTTGCGAAGCCCCCGTT
GGGAGAACTGAGATTTAGGGCCCCCGTGCCAGCAGATCCGTGGAGCGGCG
TTCTGGACTGCACCCACTATGCAGAGAAGCCAACCCAGAGGGGCTTACTG
ACCCGTGAAATCGAAGGCGGCGAGGATTGTCTGTATCTGAACGTCTATTC
CAAGCAGCTGAAAAGTGAGAAGCCATTGCCGGTGATGGTGTACATTTATG
GCGGGGCCTTCACCGTAGGAGAGGCCACCCGCGAATTGTACGGCCCGGAC
TATTTTATGACCAAAGATGTTGTTCTTGTGACGCTTAACTATCGCGTGGA
TTGTTTGGGATTCCTATCGCTCAAGGACCCGAGTCTGAAAGTTCCCGGAA
ACGCAGGACTCAAGGACCAAGTGCTAGCTCTCAAGTGGGTCAAGCAGTAC
ATCTCCAACTTCAATGGCGATGATAGTAATATTACGGTATTCGGAGAGAG
CGCCGGAGGTTGCTCCACCCACTTCATGATGTGTACGGAACAGACCAGGG
GACTGTTTCACAAGGCCATTCCCATGTCAGGAACAGTGCACAACTACTGG
GCCAATAATCCGGCCGAAGACTTTGCCTTTCGCCTGGCTCAGCAGAATGG
TTTCACTGGCGAAAATGACGACGCCAAGGTACTGGAATATCTCCAAGGAG
TTCCGGCTAGAGATTTGGTGAACCATAATTTGCTAACACCCGAGCACCGG
AGGAACGGTCTGCTCTTCGCCTTTGGACCCACTGTGGAGGCATATGTGGG
TGAGGATTGCGTGGTGCCCAAACCGCCAGTAGAGATGGCCCGAGATGCGT
GGTCCAACAATTTTCCAGTCATGTTGGGTGGAACCTCCTTCGAGGGTCTT
TTCATGTATCCAGCCGTGTCGGCCAATCTCAAGGCATTGGATAGCCTAAG
CCAGGATCCCACCAGGCTGGTGCCGGTTGATGTGCGTACGGTCAGTAGCG
AGAAAGAGAATCTGGAGTACAGCCAGCGTCTGATGAAGGCCTACTTCGGA
TATTCGCCACCCAGCTCAGAGCTACTTTTGAATATGCTCGATTTTTATTC
CTACAAAATATTTTGGCACGGCTTTAATCGCACCTTTAACGCCAGACTTA
CCTATGCAAAAGCACCCACATATTACTATCGCTTCGACTTTGATTCGCCG
AACTTCAACTTCTACCGGGCTAAATTCTGTGGAGATAAAATTAAGACTGG
TGTGGCCCACGCCGATGACCTGAGCTATTTGTTCCGGAACGCGGGCTCTT
GGAAACTGGATAAGACATCTGCGGAATATCGAACTATCGAAAGAATGATT
GGCATTTGGACGGCATTCGCTGCGACCTCCAATCCCAATTGCCCAGAGAT
TGGCCACTTGGAGTGGAAACCATCTACCAAGAATGATCCCAAGCGTGTTA
TTAACATCAGCAGCGATGTTACAATAATAGATTTGCCCGAGTATGAAAAA
CTACAAATTTGGGACAACTTGTATAAGCCAAATCAATTGATCTAAAAGCT
TTCTAGACCAT

BS07454.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:19:30
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est5-RA 1629 CG1089-PA 1..1629 17..1645 8145 100 Plus
alpha-Est5-RB 1632 CG1089-PB 1..1632 17..1645 8080 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est5-RA 1754 CG1089-RA 91..1719 17..1645 8145 100 Plus
alpha-Est5-RB 2490 CG1089-RB 91..1722 17..1645 8080 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:19:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7534802..7535536 1192..458 3675 100 Minus
3R 32079331 3R 7534264..7534716 1645..1193 2265 100 Minus
3R 32079331 3R 7535946..7536221 307..32 1380 100 Minus
3R 32079331 3R 7535732..7535885 459..306 770 100 Minus
Blast to na_te.dros performed 2014-11-27 01:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
Doc3-element 4740 Doc3-element DOC3 4740bp 1063..1101 295..333 114 76.9 Plus

BS07454.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:31 Download gff for BS07454.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est5-RA 1..1629 17..1645 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:44 Download gff for BS07454.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est5-RA 226..1852 17..1643 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:05 Download gff for BS07454.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est5-RA 91..1717 17..1643 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:31 Download gff for BS07454.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est5-RA 226..1856 17..1649 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:16 Download gff for BS07454.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est5-RA 91..1717 17..1643 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:16 Download gff for BS07454.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7534266..7534716 1193..1643 100 <- Minus
3R 7534802..7535535 459..1192 100 <- Minus
3R 7535733..7535883 308..458 100 <- Minus
3R 7535946..7536219 34..307 100 <- Minus
3R 7536284..7536300 17..33 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:05 Download gff for BS07454.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3361455..3361605 308..458 100 <- Minus
arm_3R 3361668..3361941 34..307 100 <- Minus
arm_3R 3362006..3362022 17..33 100   Minus
arm_3R 3359988..3360438 1193..1643 100 <- Minus
arm_3R 3360524..3361257 459..1192 100 <- Minus

BS07454.pep Sequence

Translation from 16 to 1644

> BS07454.pep
MMSKESLETCELTLPVGQIKGVKRLSLYDDPYFSFEKIPFAKPPLGELRF
RAPVPADPWSGVLDCTHYAEKPTQRGLLTREIEGGEDCLYLNVYSKQLKS
EKPLPVMVYIYGGAFTVGEATRELYGPDYFMTKDVVLVTLNYRVDCLGFL
SLKDPSLKVPGNAGLKDQVLALKWVKQYISNFNGDDSNITVFGESAGGCS
THFMMCTEQTRGLFHKAIPMSGTVHNYWANNPAEDFAFRLAQQNGFTGEN
DDAKVLEYLQGVPARDLVNHNLLTPEHRRNGLLFAFGPTVEAYVGEDCVV
PKPPVEMARDAWSNNFPVMLGGTSFEGLFMYPAVSANLKALDSLSQDPTR
LVPVDVRTVSSEKENLEYSQRLMKAYFGYSPPSSELLLNMLDFYSYKIFW
HGFNRTFNARLTYAKAPTYYYRFDFDSPNFNFYRAKFCGDKIKTGVAHAD
DLSYLFRNAGSWKLDKTSAEYRTIERMIGIWTAFAATSNPNCPEIGHLEW
KPSTKNDPKRVINISSDVTIIDLPEYEKLQIWDNLYKPNQLI*

BS07454.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:18:30
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est5-PA 542 CG1089-PA 1..542 1..542 2910 100 Plus
alpha-Est5-PB 543 CG1089-PB 1..543 1..542 2898 99.8 Plus
alpha-Est2-PB 566 CG2505-PB 32..565 9..541 1408 51.4 Plus
alpha-Est2-PA 566 CG2505-PA 32..565 9..541 1408 51.4 Plus
CG6018-PA 566 CG6018-PA 31..565 8..541 1393 51.1 Plus