Clone BS07456 Report

Search the DGRC for BS07456

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:56
Vector:pDNR-Dual
Associated Gene/Transcriptbnb-RA
Protein status:BS07456.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07456.3prime Sequence

865 bp (844 high quality bases) assembled on 2006-01-06

> BS07456.3prime
ATGGTCTAGAAAGCTTCTAGTTCTCCTTCGATTCGCTGCTCTCCTCCGAC
TCCTTGGACTCTGAGGACTCATCGACCTTGGACTCGGACTTGTCAGACTT
TTCCTCCGACGACTTTTTGGGCTCGGCCGATGGTGACTGGGCAATGGGCT
TGGCAATGGCCTCCTCGCCCTTGACCACGGTCTCGGCAGCTGGTGCTTCG
TCGATCTTCTTGGCCTCGGGCACGGCAGCAGGGGCAACGGCGGCGGTTGG
CTCTGGTGCTCCAGCTGGTGCTGCTGTCTCCTCCGTCTTCTTCTGTTCTG
GCAGGGCCTTGGCAGCGGTATCAGCGGCTGGCTGTTCCTTCTCCTGCTCC
TTGACGGCCTCCGTCACCTTGGTGGCACCGGCCGGAGCAAGTGGGGCATT
GGTCTTTAGGACGGGAGCGGATTCGGCAACGGTTTCGGTGCTCTTCTGCT
GGTCAACTGGCTTGGGGGCCTCACCGGACTTGGCCTGGGCAGCCTGGGCG
GCAGGAGAAGCAGCCGCAGCAGCAGGGGACGACTCGATGGACTTCTTCTC
GGGAGCAATCACCTGGATGTTGGAGTCCGACTTGGTGGCGGCTTCAGGAG
CGGCGGTGGGTGTGGCTTCAGCGGCCTTGGCTGGCTCCTCGGCAACAGCA
GCGTCCTTCTTGGCATCCTTCTGTTCGATTTCGTTGATCCTCTCCTGGCG
GGCGGGCTGCTCGGGCACGGGTGTCTCTTTCTCGGCGGCCACTACGGCGG
GAATCGCTGGCTCCTCGGCGGACTTGGCATCGATCTTGGGCTCCTGGGGC
TTGACCTCGTCGACAACTTGCTTCTGCACCTCGGCATTGGCGGCTGGGGC
TTCGGGGGCCTGTTC

BS07456.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7088-PB 1329 bnb-RB 481..1329 865..17 4245 100 Minus
CG7088-PC 1329 bnb-RC 481..1329 865..17 4245 100 Minus
CG7088-PA 1329 bnb-RA 481..1329 865..17 4245 100 Minus
CG7088-PD 1329 bnb-RD 481..1329 865..17 4245 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:17:45
Subject Length Description Subject Range Query Range Score Percent Strand
bnb-RD 1853 CG7088-RD 560..1408 865..17 4245 100 Minus
bnb-RA 2095 CG7088-RA 802..1650 865..17 4245 100 Minus
bnb-RC 1947 CG7088-RC 654..1502 865..17 4245 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18794965..18795813 17..865 4245 100 Plus
Blast to na_te.dros performed 2015-02-12 19:17:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 659..786 277..157 120 57.8 Minus

BS07456.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:25 Download gff for BS07456.3prime
Subject Subject Range Query Range Percent Splice Strand
bnb-PD 481..1329 17..865 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:03:47 Download gff for BS07456.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7088-PD 481..1329 17..865 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:53:52 Download gff for BS07456.3prime
Subject Subject Range Query Range Percent Splice Strand
bnb-RC 654..1502 17..865 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 21:00:28 Download gff for BS07456.3prime
Subject Subject Range Query Range Percent Splice Strand
bnb-RC 654..1502 17..865 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:00:28 Download gff for BS07456.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18794965..18795813 17..865 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:53:52 Download gff for BS07456.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18688998..18689846 17..865 100   Plus

BS07456.5prime Sequence

861 bp (811 high quality bases) assembled on 2006-01-06

> BS07456.5prime
GAAGTTATCAGTCGACATGAAGTGCCAACTGCTTTTCGTGGCCACCGTGT
GCCTGGCCAGCGTTTGGGCGCTTCCCGTGCCCGACGAGGAGGTGGCCATC
CAGCCGGACAGCGGTGCCAAGGCCGAGCTCCTGACCAAGACCGTGCTGCC
CACCGCCGTTGAGCCTGCTCCCTTGAAGCCCGAGGCCGAGAAGCCGGCAG
AGACCAAGACCATCGAAGCCAAGGCCGCCGTTCCAGAGCAGCCCGACGTC
AACGCCAACCCATCACCCAGCACTCCTGCCGCCGAGCCAGCCAAGGAGAT
CAACAGCGTGGAGCTCAAGTCGAGCGCGCCGGACGTAGAGACCGCTCCGG
CCATTCCTGAGAAGAAGACCCTGCCCGAGGAGGCCAAGCCCGCCCAGGAG
AACGCTCCCGTTGAGGCCGAGAAGAAGCAGGAGAAGACCGCCCGCACGGA
GGCGGAACCCACTGTCGAGGCTCAGCCCCAGGCCACCAAGGCCATTGAAC
AGGCCCCCGAAGCCCCAGCCGCCAATGCCGAGGTGCAGAAGCAAGTTGTC
GACGAGGTCAAGCCCCAGGAGCCCAAGATCGATGCCAAGTCCGCCGAGGA
GCCAGCGATTCCCGCCGTAGTGGCCGCCGAGAAAGAGACACCCGTGCCCG
AGCAGCCCGCCCGCCAGGAGAGGATCAACGAAATCGAACAGAAGGATGCC
AAGAAGGACGCTGCTGTTGCCGAGGAGCCAGCCAAGGCCGCTGAAGCCAC
ACCCACCGCCGCTCCTGAAGCCGCCACCAAGTCGGACTCCAACATCCAGG
TGATTGCTCCCGAGAAGAAGTCCATCGAGTCGTCCCCTGCTGCTGCGGCT
GCTTCTCCTGC

BS07456.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG7088-PB 1329 bnb-RB 1..845 17..861 4225 100 Plus
CG7088-PC 1329 bnb-RC 1..845 17..861 4225 100 Plus
CG7088-PA 1329 bnb-RA 1..845 17..861 4225 100 Plus
CG7088-PD 1329 bnb-RD 1..845 17..861 4225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:18
Subject Length Description Subject Range Query Range Score Percent Strand
bnb-RD 1853 CG7088-RD 80..924 17..861 4225 100 Plus
bnb-RA 2095 CG7088-RA 322..1166 17..861 4225 100 Plus
bnb-RC 1947 CG7088-RC 174..1018 17..861 4225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18795449..18796293 861..17 4225 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:55:15 has no hits.

BS07456.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:26 Download gff for BS07456.5prime
Subject Subject Range Query Range Percent Splice Strand
bnb-PD 1..845 17..861 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:03:49 Download gff for BS07456.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7088-PD 1..845 17..861 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:21:15 Download gff for BS07456.5prime
Subject Subject Range Query Range Percent Splice Strand
bnb-RC 165..1018 7..861 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:31:08 Download gff for BS07456.5prime
Subject Subject Range Query Range Percent Splice Strand
bnb-RC 165..1018 7..861 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:31:08 Download gff for BS07456.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18795449..18796298 8..861 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:21:15 Download gff for BS07456.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18689482..18690331 8..861 99   Minus

BS07456.complete Sequence

1361 bp (1361 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635870

> BS07456.complete
GAAGTTATCAGTCGACATGAAGTGCCAACTGCTTTTCGTGGCCACCGTGT
GCCTGGCCAGCGTTTGGGCGCTTCCCGTGCCCGACGAGGAGGTGGCCATC
CAGCCGGACAGCGGTGCCAAGGCCGAGCTCCTGACCAAGACCGTGCTGCC
CACCGCCGTTGAGCCTGCTCCCTTGAAGCCCGAGGCCGAGAAGCCGGCAG
AGACCAAGACCATCGAAGCCAAGGCCGCCGTTCCAGAGCAGCCCGACGTC
AACGCCAACCCATCACCCAGCACTCCTGCCGCCGAGCCAGCCAAGGAGAT
CAACAGCGTGGAGCTCAAGTCGAGCGCGCCGGACGTAGAGACCGCTCCGG
CCATTCCTGAGAAGAAGACCCTGCCCGAGGAGGCCAAGCCCGCCCAGGAG
AACGCTCCCGTTGAGGCCGAGAAGAAGCAGGAGAAGACCGCCCGCACGGA
GGCGGAACCCACTGTCGAGGCTCAGCCCCAGGCCACCAAGGCCATTGAAC
AGGCCCCCGAAGCCCCAGCCGCCAATGCCGAGGTGCAGAAGCAAGTTGTC
GACGAGGTCAAGCCCCAGGAGCCCAAGATCGATGCCAAGTCCGCCGAGGA
GCCAGCGATTCCCGCCGTAGTGGCCGCCGAGAAAGAGACACCCGTGCCCG
AGCAGCCCGCCCGCCAGGAGAGGATCAACGAAATCGAACAGAAGGATGCC
AAGAAGGACGCTGCTGTTGCCGAGGAGCCAGCCAAGGCCGCTGAAGCCAC
ACCCACCGCCGCTCCTGAAGCCGCCACCAAGTCGGACTCCAACATCCAGG
TGATTGCTCCCGAGAAGAAGTCCATCGAGTCGTCCCCTGCTGCTGCGGCT
GCTTCTCCTGCCGCCCAGGCTGCCCAGGCCAAGTCCGGTGAGGCCCCCAA
GCCAGTTGACCAGCAGAAGAGCACCGAAACCGTTGCCGAATCCGCTCCCG
TCCTAAAGACCAATGCCCCACTTGCTCCGGCCGGTGCCACCAAGGTGACG
GAGGCCGTCAAGGAGCAGGAGAAGGAACAGCCAGCCGCTGATACCGCTGC
CAAGGCCCTGCCAGAACAGAAGAAGACGGAGGAGACAGCAGCACCAGCTG
GAGCACCAGAGCCAACCGCCGCCGTTGCCCCTGCTGCCGTGCCCGAGGCC
AAGAAGATCGACGAAGCACCAGCTGCCGAGACCGTGGTCAAGGGCGAGGA
GGCCATTGCCAAGCCCATTGCCCAGTCACCATCGGCCGAGCCCAAAAAGT
CGTCGGAGGAAAAGTCTGACAAGTCCGAGTCCAAGGTCGATGAGTCCTCA
GAGTCCAAGGAGTCGGAGGAGAGCAGCGAATCGAAGGAGAACTAGAAGCT
TTCTAGACCAT

BS07456.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
bnb-RD 1329 CG7088-PD 1..1329 17..1345 6645 100 Plus
bnb-RA 1329 CG7088-PA 1..1329 17..1345 6645 100 Plus
bnb-RC 1329 CG7088-PC 1..1329 17..1345 6645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
bnb-RD 1853 CG7088-RD 80..1408 17..1345 6645 100 Plus
bnb-RA 2095 CG7088-RA 322..1650 17..1345 6645 100 Plus
bnb-RC 1947 CG7088-RC 174..1502 17..1345 6645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18794965..18796293 1345..17 6645 100 Minus
Blast to na_te.dros performed 2014-11-27 06:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 659..786 1085..1205 120 57.8 Plus

BS07456.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:45 Download gff for BS07456.complete
Subject Subject Range Query Range Percent Splice Strand
bnb-RA 1..1329 17..1345 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:50 Download gff for BS07456.complete
Subject Subject Range Query Range Percent Splice Strand
bnb-RA 317..1650 8..1345 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:47 Download gff for BS07456.complete
Subject Subject Range Query Range Percent Splice Strand
bnb-RC 174..1502 17..1345 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:45 Download gff for BS07456.complete
Subject Subject Range Query Range Percent Splice Strand
bnb-RA 317..1650 8..1345 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:17 Download gff for BS07456.complete
Subject Subject Range Query Range Percent Splice Strand
bnb-RC 174..1502 17..1345 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:17 Download gff for BS07456.complete
Subject Subject Range Query Range Percent Splice Strand
X 18794965..18796293 17..1345 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:47 Download gff for BS07456.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18688998..18690326 17..1345 100   Minus

BS07456.pep Sequence

Translation from 16 to 1344

> BS07456.pep
MKCQLLFVATVCLASVWALPVPDEEVAIQPDSGAKAELLTKTVLPTAVEP
APLKPEAEKPAETKTIEAKAAVPEQPDVNANPSPSTPAAEPAKEINSVEL
KSSAPDVETAPAIPEKKTLPEEAKPAQENAPVEAEKKQEKTARTEAEPTV
EAQPQATKAIEQAPEAPAANAEVQKQVVDEVKPQEPKIDAKSAEEPAIPA
VVAAEKETPVPEQPARQERINEIEQKDAKKDAAVAEEPAKAAEATPTAAP
EAATKSDSNIQVIAPEKKSIESSPAAAAASPAAQAAQAKSGEAPKPVDQQ
KSTETVAESAPVLKTNAPLAPAGATKVTEAVKEQEKEQPAADTAAKALPE
QKKTEETAAPAGAPEPTAAVAPAAVPEAKKIDEAPAAETVVKGEEAIAKP
IAQSPSAEPKKSSEEKSDKSESKVDESSESKESEESSESKEN*

BS07456.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:08
Subject Length Description Subject Range Query Range Score Percent Strand
bnb-PD 442 CG7088-PD 1..442 1..442 2174 100 Plus
bnb-PA 442 CG7088-PA 1..442 1..442 2174 100 Plus
bnb-PC 442 CG7088-PC 1..442 1..442 2174 100 Plus
bnb-PB 442 CG7088-PB 1..442 1..442 2174 100 Plus
Nopp140-PF 685 CG7421-PF 51..452 56..441 254 27.6 Plus