Clone Sequence Records
BS07456.3prime Sequence
865 bp (844 high quality bases) assembled on 2006-01-06
> BS07456.3prime
ATGGTCTAGAAAGCTTCTAGTTCTCCTTCGATTCGCTGCTCTCCTCCGAC
TCCTTGGACTCTGAGGACTCATCGACCTTGGACTCGGACTTGTCAGACTT
TTCCTCCGACGACTTTTTGGGCTCGGCCGATGGTGACTGGGCAATGGGCT
TGGCAATGGCCTCCTCGCCCTTGACCACGGTCTCGGCAGCTGGTGCTTCG
TCGATCTTCTTGGCCTCGGGCACGGCAGCAGGGGCAACGGCGGCGGTTGG
CTCTGGTGCTCCAGCTGGTGCTGCTGTCTCCTCCGTCTTCTTCTGTTCTG
GCAGGGCCTTGGCAGCGGTATCAGCGGCTGGCTGTTCCTTCTCCTGCTCC
TTGACGGCCTCCGTCACCTTGGTGGCACCGGCCGGAGCAAGTGGGGCATT
GGTCTTTAGGACGGGAGCGGATTCGGCAACGGTTTCGGTGCTCTTCTGCT
GGTCAACTGGCTTGGGGGCCTCACCGGACTTGGCCTGGGCAGCCTGGGCG
GCAGGAGAAGCAGCCGCAGCAGCAGGGGACGACTCGATGGACTTCTTCTC
GGGAGCAATCACCTGGATGTTGGAGTCCGACTTGGTGGCGGCTTCAGGAG
CGGCGGTGGGTGTGGCTTCAGCGGCCTTGGCTGGCTCCTCGGCAACAGCA
GCGTCCTTCTTGGCATCCTTCTGTTCGATTTCGTTGATCCTCTCCTGGCG
GGCGGGCTGCTCGGGCACGGGTGTCTCTTTCTCGGCGGCCACTACGGCGG
GAATCGCTGGCTCCTCGGCGGACTTGGCATCGATCTTGGGCTCCTGGGGC
TTGACCTCGTCGACAACTTGCTTCTGCACCTCGGCATTGGCGGCTGGGGC
TTCGGGGGCCTGTTC
BS07456.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7088-PB | 1329 | bnb-RB | 481..1329 | 865..17 | 4245 | 100 | Minus |
CG7088-PC | 1329 | bnb-RC | 481..1329 | 865..17 | 4245 | 100 | Minus |
CG7088-PA | 1329 | bnb-RA | 481..1329 | 865..17 | 4245 | 100 | Minus |
CG7088-PD | 1329 | bnb-RD | 481..1329 | 865..17 | 4245 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:17:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bnb-RD | 1853 | CG7088-RD | 560..1408 | 865..17 | 4245 | 100 | Minus |
bnb-RA | 2095 | CG7088-RA | 802..1650 | 865..17 | 4245 | 100 | Minus |
bnb-RC | 1947 | CG7088-RC | 654..1502 | 865..17 | 4245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:17:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18794965..18795813 | 17..865 | 4245 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 19:17:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 659..786 | 277..157 | 120 | 57.8 | Minus |
BS07456.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:25 Download gff for
BS07456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bnb-PD | 481..1329 | 17..865 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:03:47 Download gff for
BS07456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7088-PD | 481..1329 | 17..865 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:53:52 Download gff for
BS07456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bnb-RC | 654..1502 | 17..865 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 21:00:28 Download gff for
BS07456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bnb-RC | 654..1502 | 17..865 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:00:28 Download gff for
BS07456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18794965..18795813 | 17..865 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:53:52 Download gff for
BS07456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18688998..18689846 | 17..865 | 100 | | Plus |
BS07456.5prime Sequence
861 bp (811 high quality bases) assembled on 2006-01-06
> BS07456.5prime
GAAGTTATCAGTCGACATGAAGTGCCAACTGCTTTTCGTGGCCACCGTGT
GCCTGGCCAGCGTTTGGGCGCTTCCCGTGCCCGACGAGGAGGTGGCCATC
CAGCCGGACAGCGGTGCCAAGGCCGAGCTCCTGACCAAGACCGTGCTGCC
CACCGCCGTTGAGCCTGCTCCCTTGAAGCCCGAGGCCGAGAAGCCGGCAG
AGACCAAGACCATCGAAGCCAAGGCCGCCGTTCCAGAGCAGCCCGACGTC
AACGCCAACCCATCACCCAGCACTCCTGCCGCCGAGCCAGCCAAGGAGAT
CAACAGCGTGGAGCTCAAGTCGAGCGCGCCGGACGTAGAGACCGCTCCGG
CCATTCCTGAGAAGAAGACCCTGCCCGAGGAGGCCAAGCCCGCCCAGGAG
AACGCTCCCGTTGAGGCCGAGAAGAAGCAGGAGAAGACCGCCCGCACGGA
GGCGGAACCCACTGTCGAGGCTCAGCCCCAGGCCACCAAGGCCATTGAAC
AGGCCCCCGAAGCCCCAGCCGCCAATGCCGAGGTGCAGAAGCAAGTTGTC
GACGAGGTCAAGCCCCAGGAGCCCAAGATCGATGCCAAGTCCGCCGAGGA
GCCAGCGATTCCCGCCGTAGTGGCCGCCGAGAAAGAGACACCCGTGCCCG
AGCAGCCCGCCCGCCAGGAGAGGATCAACGAAATCGAACAGAAGGATGCC
AAGAAGGACGCTGCTGTTGCCGAGGAGCCAGCCAAGGCCGCTGAAGCCAC
ACCCACCGCCGCTCCTGAAGCCGCCACCAAGTCGGACTCCAACATCCAGG
TGATTGCTCCCGAGAAGAAGTCCATCGAGTCGTCCCCTGCTGCTGCGGCT
GCTTCTCCTGC
BS07456.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7088-PB | 1329 | bnb-RB | 1..845 | 17..861 | 4225 | 100 | Plus |
CG7088-PC | 1329 | bnb-RC | 1..845 | 17..861 | 4225 | 100 | Plus |
CG7088-PA | 1329 | bnb-RA | 1..845 | 17..861 | 4225 | 100 | Plus |
CG7088-PD | 1329 | bnb-RD | 1..845 | 17..861 | 4225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bnb-RD | 1853 | CG7088-RD | 80..924 | 17..861 | 4225 | 100 | Plus |
bnb-RA | 2095 | CG7088-RA | 322..1166 | 17..861 | 4225 | 100 | Plus |
bnb-RC | 1947 | CG7088-RC | 174..1018 | 17..861 | 4225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18795449..18796293 | 861..17 | 4225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:55:15 has no hits.
BS07456.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:26 Download gff for
BS07456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bnb-PD | 1..845 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:03:49 Download gff for
BS07456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7088-PD | 1..845 | 17..861 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:21:15 Download gff for
BS07456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bnb-RC | 165..1018 | 7..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:31:08 Download gff for
BS07456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bnb-RC | 165..1018 | 7..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:31:08 Download gff for
BS07456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18795449..18796298 | 8..861 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:21:15 Download gff for
BS07456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18689482..18690331 | 8..861 | 99 | | Minus |
BS07456.complete Sequence
1361 bp (1361 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635870
> BS07456.complete
GAAGTTATCAGTCGACATGAAGTGCCAACTGCTTTTCGTGGCCACCGTGT
GCCTGGCCAGCGTTTGGGCGCTTCCCGTGCCCGACGAGGAGGTGGCCATC
CAGCCGGACAGCGGTGCCAAGGCCGAGCTCCTGACCAAGACCGTGCTGCC
CACCGCCGTTGAGCCTGCTCCCTTGAAGCCCGAGGCCGAGAAGCCGGCAG
AGACCAAGACCATCGAAGCCAAGGCCGCCGTTCCAGAGCAGCCCGACGTC
AACGCCAACCCATCACCCAGCACTCCTGCCGCCGAGCCAGCCAAGGAGAT
CAACAGCGTGGAGCTCAAGTCGAGCGCGCCGGACGTAGAGACCGCTCCGG
CCATTCCTGAGAAGAAGACCCTGCCCGAGGAGGCCAAGCCCGCCCAGGAG
AACGCTCCCGTTGAGGCCGAGAAGAAGCAGGAGAAGACCGCCCGCACGGA
GGCGGAACCCACTGTCGAGGCTCAGCCCCAGGCCACCAAGGCCATTGAAC
AGGCCCCCGAAGCCCCAGCCGCCAATGCCGAGGTGCAGAAGCAAGTTGTC
GACGAGGTCAAGCCCCAGGAGCCCAAGATCGATGCCAAGTCCGCCGAGGA
GCCAGCGATTCCCGCCGTAGTGGCCGCCGAGAAAGAGACACCCGTGCCCG
AGCAGCCCGCCCGCCAGGAGAGGATCAACGAAATCGAACAGAAGGATGCC
AAGAAGGACGCTGCTGTTGCCGAGGAGCCAGCCAAGGCCGCTGAAGCCAC
ACCCACCGCCGCTCCTGAAGCCGCCACCAAGTCGGACTCCAACATCCAGG
TGATTGCTCCCGAGAAGAAGTCCATCGAGTCGTCCCCTGCTGCTGCGGCT
GCTTCTCCTGCCGCCCAGGCTGCCCAGGCCAAGTCCGGTGAGGCCCCCAA
GCCAGTTGACCAGCAGAAGAGCACCGAAACCGTTGCCGAATCCGCTCCCG
TCCTAAAGACCAATGCCCCACTTGCTCCGGCCGGTGCCACCAAGGTGACG
GAGGCCGTCAAGGAGCAGGAGAAGGAACAGCCAGCCGCTGATACCGCTGC
CAAGGCCCTGCCAGAACAGAAGAAGACGGAGGAGACAGCAGCACCAGCTG
GAGCACCAGAGCCAACCGCCGCCGTTGCCCCTGCTGCCGTGCCCGAGGCC
AAGAAGATCGACGAAGCACCAGCTGCCGAGACCGTGGTCAAGGGCGAGGA
GGCCATTGCCAAGCCCATTGCCCAGTCACCATCGGCCGAGCCCAAAAAGT
CGTCGGAGGAAAAGTCTGACAAGTCCGAGTCCAAGGTCGATGAGTCCTCA
GAGTCCAAGGAGTCGGAGGAGAGCAGCGAATCGAAGGAGAACTAGAAGCT
TTCTAGACCAT
BS07456.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:45:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bnb-RD | 1329 | CG7088-PD | 1..1329 | 17..1345 | 6645 | 100 | Plus |
bnb-RA | 1329 | CG7088-PA | 1..1329 | 17..1345 | 6645 | 100 | Plus |
bnb-RC | 1329 | CG7088-PC | 1..1329 | 17..1345 | 6645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:45:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bnb-RD | 1853 | CG7088-RD | 80..1408 | 17..1345 | 6645 | 100 | Plus |
bnb-RA | 2095 | CG7088-RA | 322..1650 | 17..1345 | 6645 | 100 | Plus |
bnb-RC | 1947 | CG7088-RC | 174..1502 | 17..1345 | 6645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:45:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18794965..18796293 | 1345..17 | 6645 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 06:45:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 659..786 | 1085..1205 | 120 | 57.8 | Plus |
BS07456.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:45 Download gff for
BS07456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bnb-RA | 1..1329 | 17..1345 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:50 Download gff for
BS07456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bnb-RA | 317..1650 | 8..1345 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:47 Download gff for
BS07456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bnb-RC | 174..1502 | 17..1345 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:45 Download gff for
BS07456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bnb-RA | 317..1650 | 8..1345 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:17 Download gff for
BS07456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bnb-RC | 174..1502 | 17..1345 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:17 Download gff for
BS07456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18794965..18796293 | 17..1345 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:47 Download gff for
BS07456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18688998..18690326 | 17..1345 | 100 | | Minus |
BS07456.pep Sequence
Translation from 16 to 1344
> BS07456.pep
MKCQLLFVATVCLASVWALPVPDEEVAIQPDSGAKAELLTKTVLPTAVEP
APLKPEAEKPAETKTIEAKAAVPEQPDVNANPSPSTPAAEPAKEINSVEL
KSSAPDVETAPAIPEKKTLPEEAKPAQENAPVEAEKKQEKTARTEAEPTV
EAQPQATKAIEQAPEAPAANAEVQKQVVDEVKPQEPKIDAKSAEEPAIPA
VVAAEKETPVPEQPARQERINEIEQKDAKKDAAVAEEPAKAAEATPTAAP
EAATKSDSNIQVIAPEKKSIESSPAAAAASPAAQAAQAKSGEAPKPVDQQ
KSTETVAESAPVLKTNAPLAPAGATKVTEAVKEQEKEQPAADTAAKALPE
QKKTEETAAPAGAPEPTAAVAPAAVPEAKKIDEAPAAETVVKGEEAIAKP
IAQSPSAEPKKSSEEKSDKSESKVDESSESKESEESSESKEN*
BS07456.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bnb-PD | 442 | CG7088-PD | 1..442 | 1..442 | 2174 | 100 | Plus |
bnb-PA | 442 | CG7088-PA | 1..442 | 1..442 | 2174 | 100 | Plus |
bnb-PC | 442 | CG7088-PC | 1..442 | 1..442 | 2174 | 100 | Plus |
bnb-PB | 442 | CG7088-PB | 1..442 | 1..442 | 2174 | 100 | Plus |
Nopp140-PF | 685 | CG7421-PF | 51..452 | 56..441 | 254 | 27.6 | Plus |