Clone BS07458 Report

Search the DGRC for BS07458

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG11534-RA
Protein status:BS07458.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07458.3prime Sequence

893 bp (813 high quality bases) assembled on 2006-01-06

> BS07458.3prime
ATGGTCTAGAAAGCTTTTATTCTGCGGCAGTCACGTCATCATCGGTGGCC
ACTCCATCATCATCATCATCATCGTCCTCGGTGCTCTTCATGCGATCCAA
TTGAAGACGCCGCTCTTGGATGCGAATGCATTTGGGGCAAATCATATTTT
TGCGCGTGAGGCAAACTCGGTGGAAGATGGAATTGCACTGATCACACTTG
ATGCAGCCATCGTCGAAGGGAAAGATCACCTCGTTGTTGCTACAAATCTC
GCAAATGTACGCTTGGGCAAGGCACATGGGGCAGGATCGTATGTGATCAT
TGAATGCCTTGAAAACTCCTTGCAGAAATTCGCTCAGCGCTCCAGATTCC
ACCTGGCTGAGATCACTTAGGGAATAGAACTCATTTGACTGGGCCAGATG
TCGCCGGACACCCAGTTGCTGATCCACCAGCTTCAACTCGCTGGCAATCT
TGCAGGCAGCCAGATAGTGGCGCATATGCACCAGATTTTGGCGAAGTTTC
TTTACCGCACACAATTTTTCTACGAACACAAACAGCTTGGGATTGTCCTC
CTCCAAGCGAATGAGCGGTTTATTTAGGAACAACCTAATCTCTTGGAGCG
CCGTGCGCGACACTCTGCGTGGCGAAAAGTCCCAATTGTGGATAATGCGG
GCTGGTATAAAGTTACTGTCGTTCCAGTTGCAGCGAGGGCAGTAGTACAA
TCCACTATAGTCGCATAGACGCGGCTCAATCCAGGTATTTTTTATATTTA
GCATCGTCCCGCACTCGGCGCACTTGTATCCCTGGGAGGCGAGTCCGATT
TCTGGACATATCTCCGAAATGGGATGCTGCCGCTCTGAAACCAGGACATG
GGCACAAACCCTCTTCACGCCATCGATGCACTTCTGAATGGAC

BS07458.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG11534-PA 1479 CG11534-RA 609..1479 887..17 4355 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG11534-RA 1637 CG11534-RA 681..1556 893..17 4360 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12133029..12133753 741..17 3625 100 Minus
3L 28110227 3L 12132831..12132976 887..742 730 100 Minus
Blast to na_te.dros performed 2015-02-11 09:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dnet\R1A 1757 Dnet\R1A NEOR1A 1757bp 805..831 343..317 108 88.9 Minus

BS07458.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:27 Download gff for BS07458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11534-PA 604..1479 17..893 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:03:50 Download gff for BS07458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11534-PA 604..1479 17..893 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:00:05 Download gff for BS07458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11534-RA 681..1556 17..893 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:12:31 Download gff for BS07458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11534-RA 681..1556 17..893 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:12:31 Download gff for BS07458.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12132826..12132976 742..893 99 -> Minus
3L 12133029..12133753 17..741 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:00:05 Download gff for BS07458.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12125926..12126076 742..893 99 -> Minus
arm_3L 12126129..12126853 17..741 100   Minus

BS07458.5prime Sequence

895 bp (887 high quality bases) assembled on 2006-01-06

> BS07458.5prime
GAAGTTATCAGTCGACATGAGCTCCTGGAAGGACAGTCTCACGAGCATTC
CGGGCACGGTGGCGCAGTTGATTAACGAGAGCGCCAGCAACCTGTTACAC
GCCTCATCCACGCTGGGATCAACAGTTGGCCTTGGAGGCTCTGGCTCCAC
TGGATCTGGATCCGAGGCCGGAGGCTCCGAGGAAAGTGGTCCACAAGGTG
CGGAGTACAGGGCGTTGCCCATTCCCGCGTCCTTGGTGCGCGAGCAATGG
CGCCTAATCTTCACCAGCGATGCCAATATCCAGGATTTGCAGGCGGCCAT
CGCCCATTGCAGAGATCTCGTCCTGCTGAGCGAGGAACTCAGCGAGGAGC
GTCGCTGGTTGGTGCGGCACCTGGTAGATTTGCGATACTCACTGCAGGAG
CTGGAGGAGGCCCAGGAGCAGCATTCCCTATCGTCGGACATGGTAGTTAT
GAATGCCATACGTGCTGTGGTGGGTCATCATTTTGTGCCCCATCACCCGC
ATCATGGCAAACGGAATCGTCTGCAGGCAGCCGCCAAGAGGAACTACTGT
GACCACTGCACCACCATTATTTGGAGTGTGGTGCAGAACTCGTACGTGTG
CAGCGATTGCGGATTCCTGGTCCATCAGAAGTGCATCGATGGCGTGAAGA
GGGTTTGTGCCCATGTCCTGGTTTCAGAGCGGCAGCATCCCATTTCGGAG
ATATGTCCAGAAATCGGACTCGCCTCCCAGGGATACAAGTGCGCCGAGTG
CGGGACGATGCTAAATATAAAAAATACCTGGATTGAGCCGCGTCTATGCG
ACTATAGTGGATTGTACTACTGCCCTCGCTGCAACTGGAACGACAGTAAC
TTTATACCAGCCCGCATTATCCCACATTGGGACTTTTCGCCACGC

BS07458.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11534-PA 1479 CG11534-RA 1..856 17..872 4280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:11:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG11534-RA 1637 CG11534-RA 78..956 17..895 4350 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:11:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12132223..12132976 17..770 3770 100 Plus
3L 28110227 3L 12133029..12133153 771..895 580 97.6 Plus
Blast to na_te.dros performed on 2015-02-13 08:11:36 has no hits.

BS07458.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:28 Download gff for BS07458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11534-PA 1..879 17..895 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:03:51 Download gff for BS07458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11534-PA 1..879 17..895 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:56:20 Download gff for BS07458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11534-RA 78..956 17..895 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:11:50 Download gff for BS07458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11534-RA 78..956 17..895 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:11:50 Download gff for BS07458.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12132223..12132976 17..770 100 -> Plus
3L 12133029..12133153 771..895 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:56:20 Download gff for BS07458.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12125323..12126076 17..770 100 -> Plus
arm_3L 12126129..12126253 771..895 98   Plus

BS07458.complete Sequence

1511 bp (1511 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635871

> BS07458.complete
GAAGTTATCAGTCGACATGAGCTCCTGGAAGGACAGTCTCACGAGCATTC
CGGGCACGGTGGCGCAGTTGATTAACGAGAGCGCCAGCAACCTGTTACAC
GCCTCATCCACGCTGGGATCAACAGTTGGCCTTGGAGGCTCTGGCTCCAC
TGGATCTGGATCCGAGGCCGGAGGCTCCGAGGAAAGTGGTCCACAAGGTG
CGGAGTACAGGGCGTTGCCCATTCCCGCGTCCTTGGTGCGCGAGCAATGG
CGCCTAATCTTCACCAGCGATGCCAATATCCAGGATTTGCAGGCGGCCAT
CGCCCATTGCAGAGATCTCGTCCTGCTGAGCGAGGAACTCAGCGAGGAGC
GTCGCTGGTTGGTGCGGCACCTGGTAGATTTGCGATACTCACTGCAGGAG
CTGGAGGAGGCCCAGGAGCAGCATTCCCTATCGTCGGACATGGTAGTTAT
GAATGCCATACGTGCTGTGGTGGGTCATCATTTTGTGCCCCATCACCCGC
ATCATGGCAAACGGAATCGTCTGCAGGCAGCCGCCAAGAGGAACTACTGT
GACCACTGCACCACCATTATTTGGAGTGTGGTGCAGAACTCGTACGTGTG
CAGCGATTGCGGATTCCTGGTCCATCAGAAGTGCATCGATGGCGTGAAGA
GGGTTTGTGCCCATGTCCTGGTTTCAGAGCGGCAGCATCCCATTTCGGAG
ATATGTCCAGAAATCGGACTCGCCTCCCAGGGATACAAGTGCGCCGAGTG
CGGGACGATGCTAAATATAAAAAATACCTGGATTGAGCCGCGTCTATGCG
ACTATAGTGGATTGTACTACTGCCCTCGCTGCAACTGGAACGACAGTAAC
TTTATACCAGCCCGCATTATCCACAATTGGGACTTTTCGCCACGCAGAGT
GTCGCGCACGGCGCTCCAAGAGATTAGGTTGTTCCTAAATAAACCGCTCA
TTCGCTTGGAGGAGGACAATCCCAAGCTGTTTGTGTTCGTAGAAAAATTG
TGTGCGGTAAAGAAACTTCGCCAAAATCTGGTGCATATGCGCCACTATCT
GGCTGCCTGCAAGATTGCCAGCGAGTTGAAGCTGGTGGATCAGCAACTGG
GTGTCCGGCGACATCTGGCCCAGTCAAATGAGTTCTATTCCCTAAGTGAT
CTCAGCCAGGTGGAATCTGGAGCGCTGAGCGAATTTCTGCAAGGAGTTTT
CAAGGCATTCAATGATCACATACGATCCTGCCCCATGTGCCTTGCCCAAG
CGTACATTTGCGAGATTTGTAGCAACAACGAGGTGATCTTTCCCTTCGAC
GATGGCTGCATCAAGTGTGATCAGTGCAATTCCATCTTCCACCGAGTTTG
CCTCACGCGCAAAAATATGATTTGCCCCAAATGCATTCGCATCCAAGAGC
GGCGTCTTCAATTGGATCGCATGAAGAGCACCGAGGACGATGATGATGAT
GATGATGGAGTGGCCACCGATGATGACGTGACTGCCGCAGAATAAAAGCT
TTCTAGACCAT

BS07458.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG11534-RA 1479 CG11534-PA 1..1479 17..1495 7395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11534-RA 1637 CG11534-RA 78..1556 17..1495 7395 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12132223..12132976 17..770 3770 100 Plus
3L 28110227 3L 12133029..12133753 771..1495 3625 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:43:53 has no hits.

BS07458.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:46 Download gff for BS07458.complete
Subject Subject Range Query Range Percent Splice Strand
CG11534-RA 1..1479 17..1495 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:52 Download gff for BS07458.complete
Subject Subject Range Query Range Percent Splice Strand
CG11534-RA 52..1530 17..1495 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:28 Download gff for BS07458.complete
Subject Subject Range Query Range Percent Splice Strand
CG11534-RA 78..1554 17..1493 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:46 Download gff for BS07458.complete
Subject Subject Range Query Range Percent Splice Strand
CG11534-RA 52..1530 17..1495 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:58 Download gff for BS07458.complete
Subject Subject Range Query Range Percent Splice Strand
CG11534-RA 78..1554 17..1493 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:58 Download gff for BS07458.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12132223..12132976 17..770 100 -> Plus
3L 12133029..12133751 771..1493 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:28 Download gff for BS07458.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12125323..12126076 17..770 100 -> Plus
arm_3L 12126129..12126851 771..1493 100   Plus

BS07458.pep Sequence

Translation from 16 to 1494

> BS07458.pep
MSSWKDSLTSIPGTVAQLINESASNLLHASSTLGSTVGLGGSGSTGSGSE
AGGSEESGPQGAEYRALPIPASLVREQWRLIFTSDANIQDLQAAIAHCRD
LVLLSEELSEERRWLVRHLVDLRYSLQELEEAQEQHSLSSDMVVMNAIRA
VVGHHFVPHHPHHGKRNRLQAAAKRNYCDHCTTIIWSVVQNSYVCSDCGF
LVHQKCIDGVKRVCAHVLVSERQHPISEICPEIGLASQGYKCAECGTMLN
IKNTWIEPRLCDYSGLYYCPRCNWNDSNFIPARIIHNWDFSPRRVSRTAL
QEIRLFLNKPLIRLEEDNPKLFVFVEKLCAVKKLRQNLVHMRHYLAACKI
ASELKLVDQQLGVRRHLAQSNEFYSLSDLSQVESGALSEFLQGVFKAFND
HIRSCPMCLAQAYICEICSNNEVIFPFDDGCIKCDQCNSIFHRVCLTRKN
MICPKCIRIQERRLQLDRMKSTEDDDDDDDGVATDDDVTAAE*

BS07458.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG11534-PA 492 CG11534-PA 1..492 1..492 2621 100 Plus
CG6613-PA 720 CG6613-PA 460..704 221..465 382 33.7 Plus
CG12772-PB 827 CG12772-PB 596..825 235..462 305 29.1 Plus
CG12772-PA 827 CG12772-PA 596..825 235..462 305 29.1 Plus