Clone Sequence Records
BS07458.3prime Sequence
893 bp (813 high quality bases) assembled on 2006-01-06
> BS07458.3prime
ATGGTCTAGAAAGCTTTTATTCTGCGGCAGTCACGTCATCATCGGTGGCC
ACTCCATCATCATCATCATCATCGTCCTCGGTGCTCTTCATGCGATCCAA
TTGAAGACGCCGCTCTTGGATGCGAATGCATTTGGGGCAAATCATATTTT
TGCGCGTGAGGCAAACTCGGTGGAAGATGGAATTGCACTGATCACACTTG
ATGCAGCCATCGTCGAAGGGAAAGATCACCTCGTTGTTGCTACAAATCTC
GCAAATGTACGCTTGGGCAAGGCACATGGGGCAGGATCGTATGTGATCAT
TGAATGCCTTGAAAACTCCTTGCAGAAATTCGCTCAGCGCTCCAGATTCC
ACCTGGCTGAGATCACTTAGGGAATAGAACTCATTTGACTGGGCCAGATG
TCGCCGGACACCCAGTTGCTGATCCACCAGCTTCAACTCGCTGGCAATCT
TGCAGGCAGCCAGATAGTGGCGCATATGCACCAGATTTTGGCGAAGTTTC
TTTACCGCACACAATTTTTCTACGAACACAAACAGCTTGGGATTGTCCTC
CTCCAAGCGAATGAGCGGTTTATTTAGGAACAACCTAATCTCTTGGAGCG
CCGTGCGCGACACTCTGCGTGGCGAAAAGTCCCAATTGTGGATAATGCGG
GCTGGTATAAAGTTACTGTCGTTCCAGTTGCAGCGAGGGCAGTAGTACAA
TCCACTATAGTCGCATAGACGCGGCTCAATCCAGGTATTTTTTATATTTA
GCATCGTCCCGCACTCGGCGCACTTGTATCCCTGGGAGGCGAGTCCGATT
TCTGGACATATCTCCGAAATGGGATGCTGCCGCTCTGAAACCAGGACATG
GGCACAAACCCTCTTCACGCCATCGATGCACTTCTGAATGGAC
BS07458.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11534-PA | 1479 | CG11534-RA | 609..1479 | 887..17 | 4355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:58:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11534-RA | 1637 | CG11534-RA | 681..1556 | 893..17 | 4360 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:58:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12133029..12133753 | 741..17 | 3625 | 100 | Minus |
3L | 28110227 | 3L | 12132831..12132976 | 887..742 | 730 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 09:58:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dnet\R1A | 1757 | Dnet\R1A NEOR1A 1757bp | 805..831 | 343..317 | 108 | 88.9 | Minus |
BS07458.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:27 Download gff for
BS07458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11534-PA | 604..1479 | 17..893 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:03:50 Download gff for
BS07458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11534-PA | 604..1479 | 17..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:00:05 Download gff for
BS07458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11534-RA | 681..1556 | 17..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:12:31 Download gff for
BS07458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11534-RA | 681..1556 | 17..893 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:12:31 Download gff for
BS07458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12132826..12132976 | 742..893 | 99 | -> | Minus |
3L | 12133029..12133753 | 17..741 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:00:05 Download gff for
BS07458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12125926..12126076 | 742..893 | 99 | -> | Minus |
arm_3L | 12126129..12126853 | 17..741 | 100 | | Minus |
BS07458.5prime Sequence
895 bp (887 high quality bases) assembled on 2006-01-06
> BS07458.5prime
GAAGTTATCAGTCGACATGAGCTCCTGGAAGGACAGTCTCACGAGCATTC
CGGGCACGGTGGCGCAGTTGATTAACGAGAGCGCCAGCAACCTGTTACAC
GCCTCATCCACGCTGGGATCAACAGTTGGCCTTGGAGGCTCTGGCTCCAC
TGGATCTGGATCCGAGGCCGGAGGCTCCGAGGAAAGTGGTCCACAAGGTG
CGGAGTACAGGGCGTTGCCCATTCCCGCGTCCTTGGTGCGCGAGCAATGG
CGCCTAATCTTCACCAGCGATGCCAATATCCAGGATTTGCAGGCGGCCAT
CGCCCATTGCAGAGATCTCGTCCTGCTGAGCGAGGAACTCAGCGAGGAGC
GTCGCTGGTTGGTGCGGCACCTGGTAGATTTGCGATACTCACTGCAGGAG
CTGGAGGAGGCCCAGGAGCAGCATTCCCTATCGTCGGACATGGTAGTTAT
GAATGCCATACGTGCTGTGGTGGGTCATCATTTTGTGCCCCATCACCCGC
ATCATGGCAAACGGAATCGTCTGCAGGCAGCCGCCAAGAGGAACTACTGT
GACCACTGCACCACCATTATTTGGAGTGTGGTGCAGAACTCGTACGTGTG
CAGCGATTGCGGATTCCTGGTCCATCAGAAGTGCATCGATGGCGTGAAGA
GGGTTTGTGCCCATGTCCTGGTTTCAGAGCGGCAGCATCCCATTTCGGAG
ATATGTCCAGAAATCGGACTCGCCTCCCAGGGATACAAGTGCGCCGAGTG
CGGGACGATGCTAAATATAAAAAATACCTGGATTGAGCCGCGTCTATGCG
ACTATAGTGGATTGTACTACTGCCCTCGCTGCAACTGGAACGACAGTAAC
TTTATACCAGCCCGCATTATCCCACATTGGGACTTTTCGCCACGC
BS07458.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11534-PA | 1479 | CG11534-RA | 1..856 | 17..872 | 4280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:11:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11534-RA | 1637 | CG11534-RA | 78..956 | 17..895 | 4350 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:11:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12132223..12132976 | 17..770 | 3770 | 100 | Plus |
3L | 28110227 | 3L | 12133029..12133153 | 771..895 | 580 | 97.6 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:11:36 has no hits.
BS07458.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:28 Download gff for
BS07458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11534-PA | 1..879 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:03:51 Download gff for
BS07458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11534-PA | 1..879 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:56:20 Download gff for
BS07458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11534-RA | 78..956 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:11:50 Download gff for
BS07458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11534-RA | 78..956 | 17..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:11:50 Download gff for
BS07458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12132223..12132976 | 17..770 | 100 | -> | Plus |
3L | 12133029..12133153 | 771..895 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:56:20 Download gff for
BS07458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12125323..12126076 | 17..770 | 100 | -> | Plus |
arm_3L | 12126129..12126253 | 771..895 | 98 | | Plus |
BS07458.complete Sequence
1511 bp (1511 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635871
> BS07458.complete
GAAGTTATCAGTCGACATGAGCTCCTGGAAGGACAGTCTCACGAGCATTC
CGGGCACGGTGGCGCAGTTGATTAACGAGAGCGCCAGCAACCTGTTACAC
GCCTCATCCACGCTGGGATCAACAGTTGGCCTTGGAGGCTCTGGCTCCAC
TGGATCTGGATCCGAGGCCGGAGGCTCCGAGGAAAGTGGTCCACAAGGTG
CGGAGTACAGGGCGTTGCCCATTCCCGCGTCCTTGGTGCGCGAGCAATGG
CGCCTAATCTTCACCAGCGATGCCAATATCCAGGATTTGCAGGCGGCCAT
CGCCCATTGCAGAGATCTCGTCCTGCTGAGCGAGGAACTCAGCGAGGAGC
GTCGCTGGTTGGTGCGGCACCTGGTAGATTTGCGATACTCACTGCAGGAG
CTGGAGGAGGCCCAGGAGCAGCATTCCCTATCGTCGGACATGGTAGTTAT
GAATGCCATACGTGCTGTGGTGGGTCATCATTTTGTGCCCCATCACCCGC
ATCATGGCAAACGGAATCGTCTGCAGGCAGCCGCCAAGAGGAACTACTGT
GACCACTGCACCACCATTATTTGGAGTGTGGTGCAGAACTCGTACGTGTG
CAGCGATTGCGGATTCCTGGTCCATCAGAAGTGCATCGATGGCGTGAAGA
GGGTTTGTGCCCATGTCCTGGTTTCAGAGCGGCAGCATCCCATTTCGGAG
ATATGTCCAGAAATCGGACTCGCCTCCCAGGGATACAAGTGCGCCGAGTG
CGGGACGATGCTAAATATAAAAAATACCTGGATTGAGCCGCGTCTATGCG
ACTATAGTGGATTGTACTACTGCCCTCGCTGCAACTGGAACGACAGTAAC
TTTATACCAGCCCGCATTATCCACAATTGGGACTTTTCGCCACGCAGAGT
GTCGCGCACGGCGCTCCAAGAGATTAGGTTGTTCCTAAATAAACCGCTCA
TTCGCTTGGAGGAGGACAATCCCAAGCTGTTTGTGTTCGTAGAAAAATTG
TGTGCGGTAAAGAAACTTCGCCAAAATCTGGTGCATATGCGCCACTATCT
GGCTGCCTGCAAGATTGCCAGCGAGTTGAAGCTGGTGGATCAGCAACTGG
GTGTCCGGCGACATCTGGCCCAGTCAAATGAGTTCTATTCCCTAAGTGAT
CTCAGCCAGGTGGAATCTGGAGCGCTGAGCGAATTTCTGCAAGGAGTTTT
CAAGGCATTCAATGATCACATACGATCCTGCCCCATGTGCCTTGCCCAAG
CGTACATTTGCGAGATTTGTAGCAACAACGAGGTGATCTTTCCCTTCGAC
GATGGCTGCATCAAGTGTGATCAGTGCAATTCCATCTTCCACCGAGTTTG
CCTCACGCGCAAAAATATGATTTGCCCCAAATGCATTCGCATCCAAGAGC
GGCGTCTTCAATTGGATCGCATGAAGAGCACCGAGGACGATGATGATGAT
GATGATGGAGTGGCCACCGATGATGACGTGACTGCCGCAGAATAAAAGCT
TTCTAGACCAT
BS07458.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:43:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11534-RA | 1479 | CG11534-PA | 1..1479 | 17..1495 | 7395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:43:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11534-RA | 1637 | CG11534-RA | 78..1556 | 17..1495 | 7395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:43:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12132223..12132976 | 17..770 | 3770 | 100 | Plus |
3L | 28110227 | 3L | 12133029..12133753 | 771..1495 | 3625 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:43:53 has no hits.
BS07458.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:46 Download gff for
BS07458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11534-RA | 1..1479 | 17..1495 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:52 Download gff for
BS07458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11534-RA | 52..1530 | 17..1495 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:28 Download gff for
BS07458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11534-RA | 78..1554 | 17..1493 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:46 Download gff for
BS07458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11534-RA | 52..1530 | 17..1495 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:58 Download gff for
BS07458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11534-RA | 78..1554 | 17..1493 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:58 Download gff for
BS07458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12132223..12132976 | 17..770 | 100 | -> | Plus |
3L | 12133029..12133751 | 771..1493 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:28 Download gff for
BS07458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12125323..12126076 | 17..770 | 100 | -> | Plus |
arm_3L | 12126129..12126851 | 771..1493 | 100 | | Plus |
BS07458.pep Sequence
Translation from 16 to 1494
> BS07458.pep
MSSWKDSLTSIPGTVAQLINESASNLLHASSTLGSTVGLGGSGSTGSGSE
AGGSEESGPQGAEYRALPIPASLVREQWRLIFTSDANIQDLQAAIAHCRD
LVLLSEELSEERRWLVRHLVDLRYSLQELEEAQEQHSLSSDMVVMNAIRA
VVGHHFVPHHPHHGKRNRLQAAAKRNYCDHCTTIIWSVVQNSYVCSDCGF
LVHQKCIDGVKRVCAHVLVSERQHPISEICPEIGLASQGYKCAECGTMLN
IKNTWIEPRLCDYSGLYYCPRCNWNDSNFIPARIIHNWDFSPRRVSRTAL
QEIRLFLNKPLIRLEEDNPKLFVFVEKLCAVKKLRQNLVHMRHYLAACKI
ASELKLVDQQLGVRRHLAQSNEFYSLSDLSQVESGALSEFLQGVFKAFND
HIRSCPMCLAQAYICEICSNNEVIFPFDDGCIKCDQCNSIFHRVCLTRKN
MICPKCIRIQERRLQLDRMKSTEDDDDDDDGVATDDDVTAAE*
BS07458.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11534-PA | 492 | CG11534-PA | 1..492 | 1..492 | 2621 | 100 | Plus |
CG6613-PA | 720 | CG6613-PA | 460..704 | 221..465 | 382 | 33.7 | Plus |
CG12772-PB | 827 | CG12772-PB | 596..825 | 235..462 | 305 | 29.1 | Plus |
CG12772-PA | 827 | CG12772-PA | 596..825 | 235..462 | 305 | 29.1 | Plus |