Clone BS07459 Report

Search the DGRC for BS07459

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptTrh-RA
Protein status:BS07459.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07459.5prime Sequence

883 bp (823 high quality bases) assembled on 2006-01-06

> BS07459.5prime
GAAGTTATCAGTCGACATGAGTGCTTCCGGGAAGAGTCTTCTGGGCCTGT
GGCTCTACAGGAGTGGCGAACAGGAGTGGGCCGTCAAGCAGGGAAGTCCC
TTGCACCAGCTTAAAAAGGATTCCACCACATCCGGCTCCAGCTCGCATCC
AAGTCTCGGCAGAAACGCCTCCGCTCCGCCGGAGCCGCCAAGGCTGGCCA
TCGGTGGTGGTGGTCAGGATAATGGAAGACAGCATTCCCCTGGCGAACGC
ATCTCCATCATTTTCACCCTGCGTAACCAGGTGGGAAACCTGGCCAGAGC
CCTCCAGGTTTTCCAGGAGCTGGGCATCAATGTGCTGCATTTGGAGCTAT
CGCCGCTTGAGATGGCCACCAACCAGGCGGATGTCCTCGTGGATGTGGAG
TGCGATCAGCGTCGACTCGACCAGGTGGTCAAGATGCTCAACCGAGAGGT
GGCCTCTGTGAACTACACTTCCGTGAACACGCAGGGATTGGCCAGGGCTC
CGTCGCTATCGGCGTGCTCCAGTTTTGACTTCGGCGATATGGTGTGGTTT
CCGCGAAAGATTTCCGATTTGGACAAGGCGCAGAATGTGCTCATGTACGG
CTCGGAGTTGGATGCCGACCATCCAGGATTCAAGGACCCCGTGTACCGTA
AACGGCGAGAGCAGTTCTCGGCCATTGCCAACAACTTCAAGCATGGCAAC
CCCATTCCACGTGTGCAATACACACCTGAGGAGGTGAAAACCTGGGGCAC
CGTTTTCTTGGAGCTCCACCGCCTCTACGTGTTGCATGCTGTGCCTGAGT
ACATGGACAACTGGCCGGAGCTGGAGAAGTACTGTGGCTACCGCGAGGGA
CACGTTCCCCAGTTGCAGGATGTGAGTGTCTAT

BS07459.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG9122-PA 1668 Trh-RA 1..832 17..848 4160 100 Plus
CG9122-PA 1668 Trh-RA 836..867 852..883 160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
Trh-RA 2183 CG9122-RA 84..950 17..883 4290 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1192580..1193090 527..17 2555 100 Minus
3L 28110227 3L 1192308..1192478 693..523 840 99.4 Minus
3L 28110227 3L 1191968..1192107 883..744 655 97.9 Minus
3L 28110227 3L 1192183..1192234 745..694 260 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:24:47 has no hits.

BS07459.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:31 Download gff for BS07459.5prime
Subject Subject Range Query Range Percent Splice Strand
Trh-PA 1..867 17..883 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:03:54 Download gff for BS07459.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9122-PA 1..867 17..883 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:32:42 Download gff for BS07459.5prime
Subject Subject Range Query Range Percent Splice Strand
Trh-RA 79..950 9..883 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:28:01 Download gff for BS07459.5prime
Subject Subject Range Query Range Percent Splice Strand
Trh-RA 79..950 9..883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:28:01 Download gff for BS07459.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1191968..1192106 745..883 98 <- Minus
3L 1192184..1192234 694..744 100 <- Minus
3L 1192308..1192473 528..693 100 <- Minus
3L 1192580..1193095 9..527 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:32:42 Download gff for BS07459.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1191968..1192106 745..883 98 <- Minus
arm_3L 1192184..1192234 694..744 100 <- Minus
arm_3L 1192308..1192473 528..693 100 <- Minus
arm_3L 1192580..1193095 9..527 99   Minus

BS07459.3prime Sequence

833 bp (736 high quality bases) assembled on 2006-01-06

> BS07459.3prime
ATGGTCTAGAAAGCTTCTAATCTCCCTCCGCCGTAGAGTTATCCGAGTTG
TCCGGACTGCACGGACTTCCGCCTCCGCCAGAAGCTCCACCTCTCACATT
CAGGCTGTTGTGGAGCATGTTAGCGATGCTATCCACATCCAGATTCTCGT
CCGTGGCGGAGATCTTTCGCAGTGCCGAGCAGACAATGCTGAGATCGCCT
CTGAGTTCGCTGACCACCGCTGTGATCTTCTTGGCATTCGACAGGACTTC
AACACTCATCGTGTACGGGTTGTAGCGCACTCCAAATGGCCGTTGGATGC
TCTCGGCAAAAGCTCTCATTTGCTCCTTGGCCTCCTCGAAGGAATCGGTG
TAGTAGTAGGCATTCTGGTAGGAGGTGATGATGCACTCCTGCTGGCACGT
CACCTCCGGGTCGAACTTCTTTATCTTATTCTCCGCCGTAATGGCATGCT
GCAACTCGGCCACTGAGCTCAGAAGTCCGGCTCCATACACCTTAAATGTG
CTGTCCGCCTGTTTGCACAGCCCAAATTCCACAGTAAAGAAGTAGAGCGT
AGCCAACTTCTCGATATCCGCGTCGCTTGCACCCAAAGATGCAAGGCCAA
TCTCCTGTGAAAACTGGGCAAAACTGGAGTTGGCCAGCAGGGGCATGTGG
CCCAGTAGCTCGTGGCAACAGTCCGGTTCTGGTGTGTAGAATGGATCCGA
GGAGTGTCGAATGTACTGGGTGCAGTGGAACACGCGGAAGGCGAGTCCCG
AAAGGAAGTCCCTTGGGGAGAGGTAACCCGCCACAGGCCTGAGCTGGAAT
CCCGTCTTGCGCTTGAGATAGACACTCACATCC

BS07459.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG9122-PA 1668 Trh-RA 852..1668 833..17 4085 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
Trh-RA 2183 CG9122-RA 935..1751 833..17 4085 100 Minus
ple-RC 3806 CG10118-RC 1677..1828 664..513 265 78.3 Minus
ple-RB 3124 CG10118-RB 1677..1828 664..513 265 78.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1190816..1191115 17..316 1500 100 Plus
3L 28110227 3L 1191173..1191406 315..548 1170 100 Plus
3L 28110227 3L 1191824..1191983 674..833 800 100 Plus
3L 28110227 3L 1191465..1191591 548..674 635 100 Plus
3L 28110227 3L 6715717..6715824 557..664 240 81.5 Plus
Blast to na_te.dros performed on 2015-02-03 12:06:42 has no hits.

BS07459.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:30 Download gff for BS07459.3prime
Subject Subject Range Query Range Percent Splice Strand
Trh-PA 852..1668 17..833 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:03:53 Download gff for BS07459.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9122-PA 852..1668 17..833 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:46:30 Download gff for BS07459.3prime
Subject Subject Range Query Range Percent Splice Strand
Trh-RA 935..1751 17..833 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:38:27 Download gff for BS07459.3prime
Subject Subject Range Query Range Percent Splice Strand
Trh-RA 935..1751 17..833 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:38:27 Download gff for BS07459.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1190816..1191113 17..314 100 <- Plus
3L 1191173..1191405 315..547 100 <- Plus
3L 1191465..1191591 548..674 100 <- Plus
3L 1191825..1191983 675..833 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:46:30 Download gff for BS07459.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1190816..1191113 17..314 100 <- Plus
arm_3L 1191173..1191405 315..547 100 <- Plus
arm_3L 1191465..1191591 548..674 100 <- Plus
arm_3L 1191825..1191983 675..833 100   Plus

BS07459.complete Sequence

1700 bp assembled on 2007-10-17

GenBank Submission: FJ635872

> BS07459.complete
GAAGTTATCAGTCGACATGAGTGCTTCCGGGAAGAGTCTTCTGGGCCTGT
GGCTCTACAGGAGTGGCGAACAGGAGTGGGCCGTCAAGCAGGGAAGTCCC
TTGCACCAGCTTAAAAAGGATTCCACCACATCCGGCTCCAGCTCGCATCC
AAGTCTCGGCAGAAACGCCTCCGCTCCGCCGGAGCCGCCAAGGCTGGCCA
TCGGTGGTGGTGGTCAGGATAATGGAAGACAGCATTCCCCTGGCGAACGC
ATCTCCATCATTTTCACCCTGCGTAACCAGGTGGGAAACCTGGCCAGAGC
CCTCCAGGTTTTCCAGGAGCTGGGCATCAATGTGCTGCATTTGGAGCTAT
CGCCGCTTGAGATGGCCACCAACCAGGCGGATGTCCTCGTGGATGTGGAG
TGCGATCAGCGTCGACTCGACCAGGTGGTCAAGATGCTCAACCGAGAGGT
GGCCTCTGTGAACTACACTTCCGTGAACACGCAGGGATTGGCCAGGGCTC
CGTCGCTATCGGCGTGCTCCAGTTTTGACTTCGGCGATATGGTGTGGTTT
CCGCGAAAGATTTCCGATTTGGACAAGGCGCAGAATGTGCTCATGTACGG
CTCGGAGTTGGATGCCGACCATCCAGGATTCAAGGACCCCGTGTACCGTA
AACGGCGAGAGCAGTTCTCGGCCATTGCCAACAACTTCAAGCATGGCAAC
CCCATTCCACGTGTGCAATACACACCTGAGGAGGTGAAAACCTGGGGCAC
CGTTTTCTTGGAGCTCCACCGCCTCTACGTGTTGCATGCTGTGCCTGAGT
ACATGGACAACTGGCCGGAGCTGGAGAAGTACTGTGGCTACCGCGAGGAC
AACGTTCCCCAGTTGCAGGATGTGAGTGTCTATCTCAAGCGCAAGACGGG
ATTCCAGCTCAGGCCTGTGGCGGGTTACCTCTCCCCAAGGGACTTCCTTT
CGGGACTCGCCTTCCGCGTGTTCCACTGCACCCAGTACATTCGACACTCC
TCGGATCCATTCTACACACCAGAACCGGACTGTTGCCACGAGCTACTGGG
CCACATGCCCCTGCTGGCCAACTCCAGTTTTGCCCAGTTTTCACAGGAGA
TTGGCCTTGCATCTTTGGGTGCAAGCGACGCGGATATCGAGAAGTTGGCT
ACGCTCTACTTCTTTACTGTGGAATTTGGGCTGTGCAAACAGGCGGACAG
CACATTTAAGGTGTATGGAGCCGGACTTCTGAGCTCAGTGGCCGAGTTGC
AGCATGCCATTACGGCGGAGAATAAGATAAAGAAGTTCGACCCGGAGGTG
ACGTGCCAGCAGGAGTGCATCATCACCTCCTACCAGAATGCCTACTACTA
CACCGATTCCTTCGAGGAGGCCAAGGAGCAAATGAGAGCTTTTGCCGAGA
GCATCCAACGGCCATTTGGAGTGCGCTACAACCCGTACACGATGAGTGTT
GAAGTCCTGTCGAATGCCAAGAAGATCACAGCGGTGGTCAGCGAACTCAG
AGGCGATCTCAGCATTGTCTGCTCGGCACTGCGAAAGATCTCCGCCACGG
ACGAGAATCTGGATGTGGATAGCATCGCTAACATGCTCCACAACAGCCTG
AATGTGAGAGGTGGAGCTTCTGGCGGAGGCGGAAGTCCGTGCAGTCCGGA
CAACTCGGATAACTCTACGGCGGAGGGAGATTAGAAGCTTTCTAGACCAT

BS07459.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:35:15
Subject Length Description Subject Range Query Range Score Percent Strand
Trh-RA 1668 CG9122-PA 1..1668 17..1684 8340 100 Plus
ple-RC 1740 CG10118-PC 1225..1376 1037..1188 265 78.3 Plus
ple-RB 1740 CG10118-PB 1225..1376 1037..1188 265 78.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
Trh-RA 2183 CG9122-RA 84..1751 17..1684 8340 100 Plus
ple-RC 3806 CG10118-RC 1677..1828 1037..1188 265 78.3 Plus
ple-RB 3124 CG10118-RB 1677..1828 1037..1188 265 78.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:35:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1192580..1193090 527..17 2555 100 Minus
3L 28110227 3L 1190816..1191115 1684..1385 1500 100 Minus
3L 28110227 3L 1191824..1192107 1027..744 1420 100 Minus
3L 28110227 3L 1191173..1191406 1386..1153 1170 100 Minus
3L 28110227 3L 1192308..1192478 693..523 840 99.4 Minus
3L 28110227 3L 1191465..1191591 1153..1027 635 100 Minus
3L 28110227 3L 1192183..1192234 745..694 260 100 Minus
3L 28110227 3L 6715717..6715824 1144..1037 240 81.5 Minus
Blast to na_te.dros performed on 2014-11-27 16:35:14 has no hits.

BS07459.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:33 Download gff for BS07459.complete
Subject Subject Range Query Range Percent Splice Strand
Trh-RA 1..1668 17..1684 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:37:01 Download gff for BS07459.complete
Subject Subject Range Query Range Percent Splice Strand
Trh-RA 75..1747 9..1684 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:15 Download gff for BS07459.complete
Subject Subject Range Query Range Percent Splice Strand
Trh-RA 84..1751 17..1684 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:32:44 Download gff for BS07459.complete
Subject Subject Range Query Range Percent Splice Strand
Trh-RA 80..1747 17..1684 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:57 Download gff for BS07459.complete
Subject Subject Range Query Range Percent Splice Strand
Trh-RA 84..1751 17..1684 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:57 Download gff for BS07459.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1191825..1192106 745..1026 100 <- Minus
3L 1192184..1192234 694..744 100 <- Minus
3L 1192308..1192473 528..693 100 <- Minus
3L 1190816..1191113 1387..1684 100 <- Minus
3L 1191173..1191405 1154..1386 100 <- Minus
3L 1191465..1191591 1027..1153 100 <- Minus
3L 1192580..1193090 17..527 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:15 Download gff for BS07459.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1190816..1191113 1387..1684 100 <- Minus
arm_3L 1191173..1191405 1154..1386 100 <- Minus
arm_3L 1191465..1191591 1027..1153 100 <- Minus
arm_3L 1191825..1192106 745..1026 100 <- Minus
arm_3L 1192184..1192234 694..744 100 <- Minus
arm_3L 1192308..1192473 528..693 100 <- Minus
arm_3L 1192580..1193090 17..527 100   Minus

BS07459.pep Sequence

Translation from 16 to 1683

> BS07459.pep
MSASGKSLLGLWLYRSGEQEWAVKQGSPLHQLKKDSTTSGSSSHPSLGRN
ASAPPEPPRLAIGGGGQDNGRQHSPGERISIIFTLRNQVGNLARALQVFQ
ELGINVLHLELSPLEMATNQADVLVDVECDQRRLDQVVKMLNREVASVNY
TSVNTQGLARAPSLSACSSFDFGDMVWFPRKISDLDKAQNVLMYGSELDA
DHPGFKDPVYRKRREQFSAIANNFKHGNPIPRVQYTPEEVKTWGTVFLEL
HRLYVLHAVPEYMDNWPELEKYCGYREDNVPQLQDVSVYLKRKTGFQLRP
VAGYLSPRDFLSGLAFRVFHCTQYIRHSSDPFYTPEPDCCHELLGHMPLL
ANSSFAQFSQEIGLASLGASDADIEKLATLYFFTVEFGLCKQADSTFKVY
GAGLLSSVAELQHAITAENKIKKFDPEVTCQQECIITSYQNAYYYTDSFE
EAKEQMRAFAESIQRPFGVRYNPYTMSVEVLSNAKKITAVVSELRGDLSI
VCSALRKISATDENLDVDSIANMLHNSLNVRGGASGGGGSPCSPDNSDNS
TAEGD*

BS07459.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
Trh-PA 555 CG9122-PA 1..555 1..555 2905 100 Plus
Hn-PB 447 CG7399-PB 41..445 90..508 1047 50.5 Plus
Hn-PC 452 CG7399-PC 46..450 90..508 1047 50.5 Plus
Hn-PA 452 CG7399-PA 46..450 90..508 1047 50.5 Plus
ple-PA 508 CG10118-PA 89..504 80..508 869 42.1 Plus