Clone Sequence Records
BS07463.3prime Sequence
965 bp (768 high quality bases) assembled on 2006-01-06
> BS07463.3prime
ATGGTCTAGAAAGCTTTTAATCAATGAGGAGCTCATAGTGCACCGATCCG
ATTCTCTCCTTGCGATCGTGTATGATGTTGCGAGCCCAAGCCCTGCACTC
CACGTTGATGATGATTCCGCGTTTGGGGCGCTGGAAGTGCACCGCCACCA
GGGGACTCAAGTAGCCCTCGGAGTTCTGGTAGGGATAGAAGTAGCCGGGG
AATCCCCTGATTGGCAGGTAGTTGACAGCACCAATGTTCTCCTGGTCGGC
TGGGTTCTCGCCCTCGCACGATACCCAAATGGTGTTTAGCTTTTCTGGCT
GCGTCTTCTCGACCTCTGCGATGTAGGTCTTCAAGCTGGCGGGCATGTTC
GCGGGCAAGTCATTCGATCTGTTGTAGTACTCCGGAATCCAGCCGTAGAT
CTTGTTCAGCTTGAGGAAGATACACGGCGCACTCTTGTGGTAGCTGTAGT
TATTCTCCTTGGTGCACGGCGACCACGTCTTGATGTCCACGTCGCACACC
TGACCCTTTGGCGGCGGCTGGTTGTAGTCGCAGTTGTAGATGTTCTGACC
ACGGCCGGGTGTTAGACCAGGTACTTTGTACACCGCAAGGAAATCATCCA
GGGAGTCTGTCCAGTGCTTGTAGTTCTCGTGTTGGGTGCCCTTGTACCAG
ATCAAAGTGCTTTCCACATTGTCCACCGGTGGCAGGGGTCGAAAACCTAG
ACCTGGATTTGTACCTATCAGGGAACGGTCCAGGGTCCACTTGGGAATGC
GAGGATCGAGAGTTTGGAAGAAGGCCCACATGCAGATGGCAACGAGGGCG
GCTAGGACTCCGTAGAAGGCCACATAGAAGATTCCGATTTTGGCCCAGCT
GTCCATCGAGCGTCCGAAGTAGGAGTTGTCCTCCGAGTCGTAAACCATCT
GCTTCAGGGACTTCTTCTTGGGGCTCTCCGGTGGCCGCGAGTAGTACTGT
TGGGATTCATCTATG
BS07463.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9261-PC | 972 | nrv2-RC | 24..972 | 965..17 | 4645 | 99.5 | Minus |
CG9261-PF | 972 | nrv2-RF | 24..972 | 965..17 | 4645 | 99.5 | Minus |
CG9261-PD | 969 | nrv2-RD | 139..969 | 847..17 | 4155 | 100 | Minus |
CG9261-PA | 969 | nrv2-RA | 139..969 | 847..17 | 4155 | 100 | Minus |
CG9261-PE | 969 | nrv2-RE | 139..969 | 847..17 | 4155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nrv2-RG | 2635 | CG9261-RG | 818..1767 | 965..16 | 4690 | 99.6 | Minus |
nrv2-RF | 2143 | CG9261-RF | 326..1275 | 965..16 | 4690 | 99.6 | Minus |
nrv2-RC | 2668 | CG9261-RC | 851..1800 | 965..16 | 4690 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6791031..6791328 | 290..587 | 1475 | 99.7 | Plus |
2L | 23513712 | 2L | 6790798..6790969 | 120..291 | 860 | 100 | Plus |
2L | 23513712 | 2L | 6791699..6791842 | 701..844 | 720 | 100 | Plus |
2L | 23513712 | 2L | 6791518..6791640 | 583..705 | 615 | 100 | Plus |
2L | 23513712 | 2L | 6796337..6796458 | 844..965 | 550 | 96.7 | Plus |
2L | 23513712 | 2L | 6790638..6790742 | 16..120 | 525 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 18:58:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 925..961 | 128..93 | 119 | 83.8 | Minus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 4633..4686 | 742..795 | 117 | 68.5 | Plus |
BS07463.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:36 Download gff for
BS07463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9261-PF | 24..972 | 17..965 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:04:01 Download gff for
BS07463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9261-PF | 24..972 | 17..965 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:08:39 Download gff for
BS07463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nrv2-RC | 851..1802 | 11..965 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:20:07 Download gff for
BS07463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nrv2-RC | 851..1802 | 11..965 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:20:07 Download gff for
BS07463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6796337..6796458 | 844..965 | 96 | | Plus |
2L | 6791701..6791841 | 703..843 | 100 | <- | Plus |
2L | 6790636..6790742 | 11..120 | 97 | <- | Plus |
2L | 6790799..6790967 | 121..289 | 100 | <- | Plus |
2L | 6791031..6791323 | 290..582 | 100 | <- | Plus |
2L | 6791518..6791637 | 583..702 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:08:39 Download gff for
BS07463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6790636..6790742 | 11..120 | 97 | <- | Plus |
arm_2L | 6790799..6790967 | 121..289 | 100 | <- | Plus |
arm_2L | 6791031..6791323 | 290..582 | 100 | <- | Plus |
arm_2L | 6791518..6791637 | 583..702 | 100 | <- | Plus |
arm_2L | 6791701..6791841 | 703..843 | 100 | <- | Plus |
arm_2L | 6796337..6796458 | 844..965 | 96 | | Plus |
BS07463.5prime Sequence
913 bp (790 high quality bases) assembled on 2006-01-06
> BS07463.5prime
GAAGTTATCAGTCGACATGCCTACCATAACCGAGGATTGCATAGATGGAT
TCCAACAGTACTACTCGCGGCCACCGGAGAGGCCCAAGAAGAAGTCCCTG
AAGCAGATGGTCTACGACTCGGAGGACAACTCCTACTTCGGACGCTCGAT
GGACAGCTGGGCCAAAATCGGAATCTTCTATGTGGCCTTCTACGGAGTCC
TAGCCGCCCTCGTTGCCATCTGCATGTGGGCCTTCTTCCAAACTCTCGAT
CCTCGCATTCCCAAGTGGACCCTGGACCGTTCCCTGATAGGTACAAATCC
AGGTCTAGGTTTTCGACCCCTGCCACCGGTGGACAATGTGGAAAGCACTT
TGATCTGGTACAAGGGCACCCAACACGAGAACTACAAGCACTGGACAGAC
TCCCTGGATGATTTCCTTGCGGTGTACAAAGTACCTGGTCTAACACCCGG
CCGTGGTCAGAACATCTACAACTGCGACTACAACCAGCCGCCGCCAAAGG
GTCAGGTGTGCGACGTGGACATCAAGACGTGGTCGCCGTGCACCAAGGAG
AATAACTACAGCTACCACAAGAGTGCGCCGTGTATCTTCCTCAAGCTGAA
CAAGATCTACGGCTGGATTCCGGAGTACTACAACAGATCGAATGACTTGC
CCGCGAACATGCCCGCCAGCTTGAAGACCTACATCGCAGAGGTCGAGAAG
ACGCAGCCAGAANAGCTAAACACCATTTGGGTATCGTGCGAGGGCGAGAA
CCCAGCCGACCAGGAGAACATTGGTGCTGTCAACTACCTGCCAATCAGGG
GATTCCCCGGCTACTTCTATCCCTACCAGAACTCCGAGGGCTACTTGAGT
CCCCTGGTGGCGGTGCACTTCCAGCGCCCCCAACGCGGAATCATCATCAA
CGTGGAGTGCAGG
BS07463.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9261-PC | 972 | nrv2-RC | 1..897 | 17..913 | 4441 | 99.7 | Plus |
CG9261-PF | 972 | nrv2-RF | 1..897 | 17..913 | 4441 | 99.7 | Plus |
CG9261-PD | 969 | nrv2-RD | 139..894 | 158..913 | 3736 | 99.7 | Plus |
CG9261-PA | 969 | nrv2-RA | 139..894 | 158..913 | 3736 | 99.7 | Plus |
CG9261-PE | 969 | nrv2-RE | 139..894 | 158..913 | 3736 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:21:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nrv2-RG | 2635 | CG9261-RG | 795..1691 | 17..913 | 4459 | 99.8 | Plus |
nrv2-RF | 2143 | CG9261-RF | 303..1199 | 17..913 | 4459 | 99.8 | Plus |
nrv2-RC | 2668 | CG9261-RC | 828..1724 | 17..913 | 4459 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:21:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6791034..6791328 | 712..418 | 1460 | 99.7 | Minus |
2L | 23513712 | 2L | 6790798..6790969 | 885..714 | 845 | 99.4 | Minus |
2L | 23513712 | 2L | 6796337..6796481 | 161..17 | 725 | 100 | Minus |
2L | 23513712 | 2L | 6791699..6791842 | 304..161 | 720 | 100 | Minus |
2L | 23513712 | 2L | 6791518..6791640 | 422..300 | 615 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 12:21:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 4633..4686 | 263..210 | 117 | 68.5 | Minus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 925..961 | 877..912 | 110 | 81.1 | Plus |
BS07463.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:37 Download gff for
BS07463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9261-PF | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:04:02 Download gff for
BS07463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9261-PF | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:59:27 Download gff for
BS07463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nrv2-RC | 823..1724 | 11..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:08:44 Download gff for
BS07463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nrv2-RC | 823..1724 | 11..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:08:44 Download gff for
BS07463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6791518..6791637 | 303..422 | 100 | <- | Minus |
2L | 6791701..6791841 | 162..302 | 100 | <- | Minus |
2L | 6790714..6790742 | 885..913 | 100 | <- | Minus |
2L | 6790799..6790967 | 716..884 | 99 | <- | Minus |
2L | 6791031..6791323 | 423..715 | 99 | <- | Minus |
2L | 6796337..6796486 | 11..161 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:59:27 Download gff for
BS07463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6791518..6791637 | 303..422 | 100 | <- | Minus |
arm_2L | 6791701..6791841 | 162..302 | 100 | <- | Minus |
arm_2L | 6796337..6796486 | 11..161 | 98 | | Minus |
arm_2L | 6790714..6790742 | 885..913 | 100 | <- | Minus |
arm_2L | 6790799..6790967 | 716..884 | 99 | <- | Minus |
arm_2L | 6791031..6791323 | 423..715 | 99 | <- | Minus |
BS07463.complete Sequence
1004 bp (1004 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635874
> BS07463.complete
GAAGTTATCAGTCGACATGCCTACCATAACCGAGGATTGCATAGATGGAT
TCCAACAGTACTACTCGCGGCCACCGGAGAGGCCCAAGAAGAAGTCCCTG
AAGCAGATGGTCTACGACTCGGAGGACAACTCCTACTTCGGACGCTCGAT
GGACAGCTGGGCCAAAATCGGAATCTTCTATGTGGCCTTCTACGGAGTCC
TAGCCGCCCTCGTTGCCATCTGCATGTGGGCCTTCTTCCAAACTCTCGAT
CCTCGCATTCCCAAGTGGACCCTGGACCGTTCCCTGATAGGTACAAATCC
AGGTCTAGGTTTTCGACCCCTGCCACCGGTGGACAATGTGGAAAGCACTT
TGATCTGGTACAAGGGCACCCAACACGAGAACTACAAGCACTGGACAGAC
TCCCTGGATGATTTCCTTGCGGTGTACAAAGTACCTGGTCTAACACCCGG
CCGTGGTCAGAACATCTACAACTGCGACTACAACCAGCCGCCGCCAAAGG
GTCAGGTGTGCGACGTGGACATCAAGACGTGGTCGCCGTGCACCAAGGAG
AATAACTACAGCTACCACAAGAGTGCGCCGTGTATCTTCCTCAAGCTGAA
CAAGATCTACGGCTGGATTCCGGAGTACTACAACAGATCGAATGACTTGC
CCGCGAACATGCCCGCCAGCTTGAAGACCTACATCGCAGAGGTCGAGAAG
ACGCAGCCAGAAAAGCTAAACACCATTTGGGTATCGTGCGAGGGCGAGAA
CCCAGCCGACCAGGAGAACATTGGTGCTGTCAACTACCTGCCAATCAGGG
GATTCCCCGGCTACTTCTATCCCTACCAGAACTCCGAGGGCTACTTGAGT
CCCCTGGTGGCGGTGCACTTCCAGCGCCCCAAACGCGGAATCATCATCAA
CGTGGAGTGCAGGGCTTGGGCTCGCAACATCATACACGATCGCAAGGAGA
GAATCGGATCGGTGCACTATGAGCTCCTCATTGATTAAAAGCTTTCTAGA
CCAT
BS07463.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:21:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nrv2-RG | 972 | CG9261-PG | 1..972 | 17..988 | 4860 | 100 | Plus |
nrv2-RF | 972 | CG9261-PF | 1..972 | 17..988 | 4860 | 100 | Plus |
nrv2-RC | 972 | CG9261-PC | 1..972 | 17..988 | 4860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nrv2-RG | 2635 | CG9261-RG | 795..1767 | 17..989 | 4865 | 100 | Plus |
nrv2-RF | 2143 | CG9261-RF | 303..1275 | 17..989 | 4865 | 100 | Plus |
nrv2-RC | 2668 | CG9261-RC | 828..1800 | 17..989 | 4865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6791031..6791328 | 715..418 | 1475 | 99.7 | Minus |
2L | 23513712 | 2L | 6790798..6790969 | 885..714 | 860 | 100 | Minus |
2L | 23513712 | 2L | 6796337..6796481 | 161..17 | 725 | 100 | Minus |
2L | 23513712 | 2L | 6791699..6791842 | 304..161 | 720 | 100 | Minus |
2L | 23513712 | 2L | 6791518..6791640 | 422..300 | 615 | 100 | Minus |
2L | 23513712 | 2L | 6790638..6790742 | 989..885 | 525 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:21:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 925..961 | 877..912 | 119 | 83.8 | Plus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 4633..4686 | 263..210 | 117 | 68.5 | Minus |
BS07463.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:47 Download gff for
BS07463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nrv2-RF | 1..972 | 17..988 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:54 Download gff for
BS07463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nrv2-RF | 295..1274 | 11..994 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:37 Download gff for
BS07463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nrv2-RC | 828..1797 | 17..986 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:47 Download gff for
BS07463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nrv2-RF | 295..1274 | 11..994 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:04 Download gff for
BS07463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nrv2-RC | 828..1797 | 17..986 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:04 Download gff for
BS07463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6790641..6790742 | 885..986 | 100 | <- | Minus |
2L | 6790799..6790967 | 716..884 | 100 | <- | Minus |
2L | 6791031..6791323 | 423..715 | 100 | <- | Minus |
2L | 6791518..6791637 | 303..422 | 100 | <- | Minus |
2L | 6791701..6791841 | 162..302 | 100 | <- | Minus |
2L | 6796337..6796481 | 17..161 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:37 Download gff for
BS07463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6790799..6790967 | 716..884 | 100 | <- | Minus |
arm_2L | 6790641..6790742 | 885..986 | 100 | <- | Minus |
arm_2L | 6791031..6791323 | 423..715 | 100 | <- | Minus |
arm_2L | 6791518..6791637 | 303..422 | 100 | <- | Minus |
arm_2L | 6791701..6791841 | 162..302 | 100 | <- | Minus |
arm_2L | 6796337..6796481 | 17..161 | 100 | | Minus |
BS07463.pep Sequence
Translation from 16 to 987
> BS07463.pep
MPTITEDCIDGFQQYYSRPPERPKKKSLKQMVYDSEDNSYFGRSMDSWAK
IGIFYVAFYGVLAALVAICMWAFFQTLDPRIPKWTLDRSLIGTNPGLGFR
PLPPVDNVESTLIWYKGTQHENYKHWTDSLDDFLAVYKVPGLTPGRGQNI
YNCDYNQPPPKGQVCDVDIKTWSPCTKENNYSYHKSAPCIFLKLNKIYGW
IPEYYNRSNDLPANMPASLKTYIAEVEKTQPEKLNTIWVSCEGENPADQE
NIGAVNYLPIRGFPGYFYPYQNSEGYLSPLVAVHFQRPKRGIIINVECRA
WARNIIHDRKERIGSVHYELLID*
BS07463.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nrv2-PG | 323 | CG9261-PG | 1..323 | 1..323 | 1792 | 100 | Plus |
nrv2-PF | 323 | CG9261-PF | 1..323 | 1..323 | 1792 | 100 | Plus |
nrv2-PC | 323 | CG9261-PC | 1..323 | 1..323 | 1792 | 100 | Plus |
nrv2-PE | 322 | CG9261-PE | 21..322 | 22..323 | 1589 | 94.7 | Plus |
nrv2-PA | 322 | CG9261-PA | 21..322 | 22..323 | 1589 | 94.7 | Plus |