Clone BS07463 Report

Search the DGRC for BS07463

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:63
Vector:pDNR-Dual
Associated Gene/Transcriptnrv2-RC
Protein status:BS07463.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07463.3prime Sequence

965 bp (768 high quality bases) assembled on 2006-01-06

> BS07463.3prime
ATGGTCTAGAAAGCTTTTAATCAATGAGGAGCTCATAGTGCACCGATCCG
ATTCTCTCCTTGCGATCGTGTATGATGTTGCGAGCCCAAGCCCTGCACTC
CACGTTGATGATGATTCCGCGTTTGGGGCGCTGGAAGTGCACCGCCACCA
GGGGACTCAAGTAGCCCTCGGAGTTCTGGTAGGGATAGAAGTAGCCGGGG
AATCCCCTGATTGGCAGGTAGTTGACAGCACCAATGTTCTCCTGGTCGGC
TGGGTTCTCGCCCTCGCACGATACCCAAATGGTGTTTAGCTTTTCTGGCT
GCGTCTTCTCGACCTCTGCGATGTAGGTCTTCAAGCTGGCGGGCATGTTC
GCGGGCAAGTCATTCGATCTGTTGTAGTACTCCGGAATCCAGCCGTAGAT
CTTGTTCAGCTTGAGGAAGATACACGGCGCACTCTTGTGGTAGCTGTAGT
TATTCTCCTTGGTGCACGGCGACCACGTCTTGATGTCCACGTCGCACACC
TGACCCTTTGGCGGCGGCTGGTTGTAGTCGCAGTTGTAGATGTTCTGACC
ACGGCCGGGTGTTAGACCAGGTACTTTGTACACCGCAAGGAAATCATCCA
GGGAGTCTGTCCAGTGCTTGTAGTTCTCGTGTTGGGTGCCCTTGTACCAG
ATCAAAGTGCTTTCCACATTGTCCACCGGTGGCAGGGGTCGAAAACCTAG
ACCTGGATTTGTACCTATCAGGGAACGGTCCAGGGTCCACTTGGGAATGC
GAGGATCGAGAGTTTGGAAGAAGGCCCACATGCAGATGGCAACGAGGGCG
GCTAGGACTCCGTAGAAGGCCACATAGAAGATTCCGATTTTGGCCCAGCT
GTCCATCGAGCGTCCGAAGTAGGAGTTGTCCTCCGAGTCGTAAACCATCT
GCTTCAGGGACTTCTTCTTGGGGCTCTCCGGTGGCCGCGAGTAGTACTGT
TGGGATTCATCTATG

BS07463.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG9261-PC 972 nrv2-RC 24..972 965..17 4645 99.5 Minus
CG9261-PF 972 nrv2-RF 24..972 965..17 4645 99.5 Minus
CG9261-PD 969 nrv2-RD 139..969 847..17 4155 100 Minus
CG9261-PA 969 nrv2-RA 139..969 847..17 4155 100 Minus
CG9261-PE 969 nrv2-RE 139..969 847..17 4155 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
nrv2-RG 2635 CG9261-RG 818..1767 965..16 4690 99.6 Minus
nrv2-RF 2143 CG9261-RF 326..1275 965..16 4690 99.6 Minus
nrv2-RC 2668 CG9261-RC 851..1800 965..16 4690 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6791031..6791328 290..587 1475 99.7 Plus
2L 23513712 2L 6790798..6790969 120..291 860 100 Plus
2L 23513712 2L 6791699..6791842 701..844 720 100 Plus
2L 23513712 2L 6791518..6791640 583..705 615 100 Plus
2L 23513712 2L 6796337..6796458 844..965 550 96.7 Plus
2L 23513712 2L 6790638..6790742 16..120 525 100 Plus
Blast to na_te.dros performed 2015-02-10 18:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 925..961 128..93 119 83.8 Minus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 4633..4686 742..795 117 68.5 Plus

BS07463.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:36 Download gff for BS07463.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9261-PF 24..972 17..965 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:04:01 Download gff for BS07463.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9261-PF 24..972 17..965 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:08:39 Download gff for BS07463.3prime
Subject Subject Range Query Range Percent Splice Strand
nrv2-RC 851..1802 11..965 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:20:07 Download gff for BS07463.3prime
Subject Subject Range Query Range Percent Splice Strand
nrv2-RC 851..1802 11..965 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:20:07 Download gff for BS07463.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6796337..6796458 844..965 96   Plus
2L 6791701..6791841 703..843 100 <- Plus
2L 6790636..6790742 11..120 97 <- Plus
2L 6790799..6790967 121..289 100 <- Plus
2L 6791031..6791323 290..582 100 <- Plus
2L 6791518..6791637 583..702 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:08:39 Download gff for BS07463.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6790636..6790742 11..120 97 <- Plus
arm_2L 6790799..6790967 121..289 100 <- Plus
arm_2L 6791031..6791323 290..582 100 <- Plus
arm_2L 6791518..6791637 583..702 100 <- Plus
arm_2L 6791701..6791841 703..843 100 <- Plus
arm_2L 6796337..6796458 844..965 96   Plus

BS07463.5prime Sequence

913 bp (790 high quality bases) assembled on 2006-01-06

> BS07463.5prime
GAAGTTATCAGTCGACATGCCTACCATAACCGAGGATTGCATAGATGGAT
TCCAACAGTACTACTCGCGGCCACCGGAGAGGCCCAAGAAGAAGTCCCTG
AAGCAGATGGTCTACGACTCGGAGGACAACTCCTACTTCGGACGCTCGAT
GGACAGCTGGGCCAAAATCGGAATCTTCTATGTGGCCTTCTACGGAGTCC
TAGCCGCCCTCGTTGCCATCTGCATGTGGGCCTTCTTCCAAACTCTCGAT
CCTCGCATTCCCAAGTGGACCCTGGACCGTTCCCTGATAGGTACAAATCC
AGGTCTAGGTTTTCGACCCCTGCCACCGGTGGACAATGTGGAAAGCACTT
TGATCTGGTACAAGGGCACCCAACACGAGAACTACAAGCACTGGACAGAC
TCCCTGGATGATTTCCTTGCGGTGTACAAAGTACCTGGTCTAACACCCGG
CCGTGGTCAGAACATCTACAACTGCGACTACAACCAGCCGCCGCCAAAGG
GTCAGGTGTGCGACGTGGACATCAAGACGTGGTCGCCGTGCACCAAGGAG
AATAACTACAGCTACCACAAGAGTGCGCCGTGTATCTTCCTCAAGCTGAA
CAAGATCTACGGCTGGATTCCGGAGTACTACAACAGATCGAATGACTTGC
CCGCGAACATGCCCGCCAGCTTGAAGACCTACATCGCAGAGGTCGAGAAG
ACGCAGCCAGAANAGCTAAACACCATTTGGGTATCGTGCGAGGGCGAGAA
CCCAGCCGACCAGGAGAACATTGGTGCTGTCAACTACCTGCCAATCAGGG
GATTCCCCGGCTACTTCTATCCCTACCAGAACTCCGAGGGCTACTTGAGT
CCCCTGGTGGCGGTGCACTTCCAGCGCCCCCAACGCGGAATCATCATCAA
CGTGGAGTGCAGG

BS07463.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9261-PC 972 nrv2-RC 1..897 17..913 4441 99.7 Plus
CG9261-PF 972 nrv2-RF 1..897 17..913 4441 99.7 Plus
CG9261-PD 969 nrv2-RD 139..894 158..913 3736 99.7 Plus
CG9261-PA 969 nrv2-RA 139..894 158..913 3736 99.7 Plus
CG9261-PE 969 nrv2-RE 139..894 158..913 3736 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
nrv2-RG 2635 CG9261-RG 795..1691 17..913 4459 99.8 Plus
nrv2-RF 2143 CG9261-RF 303..1199 17..913 4459 99.8 Plus
nrv2-RC 2668 CG9261-RC 828..1724 17..913 4459 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:21:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6791034..6791328 712..418 1460 99.7 Minus
2L 23513712 2L 6790798..6790969 885..714 845 99.4 Minus
2L 23513712 2L 6796337..6796481 161..17 725 100 Minus
2L 23513712 2L 6791699..6791842 304..161 720 100 Minus
2L 23513712 2L 6791518..6791640 422..300 615 100 Minus
Blast to na_te.dros performed 2015-02-12 12:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 4633..4686 263..210 117 68.5 Minus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 925..961 877..912 110 81.1 Plus

BS07463.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:37 Download gff for BS07463.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9261-PF 1..897 17..913 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:04:02 Download gff for BS07463.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9261-PF 1..897 17..913 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:59:27 Download gff for BS07463.5prime
Subject Subject Range Query Range Percent Splice Strand
nrv2-RC 823..1724 11..913 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:08:44 Download gff for BS07463.5prime
Subject Subject Range Query Range Percent Splice Strand
nrv2-RC 823..1724 11..913 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:08:44 Download gff for BS07463.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6791518..6791637 303..422 100 <- Minus
2L 6791701..6791841 162..302 100 <- Minus
2L 6790714..6790742 885..913 100 <- Minus
2L 6790799..6790967 716..884 99 <- Minus
2L 6791031..6791323 423..715 99 <- Minus
2L 6796337..6796486 11..161 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:59:27 Download gff for BS07463.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6791518..6791637 303..422 100 <- Minus
arm_2L 6791701..6791841 162..302 100 <- Minus
arm_2L 6796337..6796486 11..161 98   Minus
arm_2L 6790714..6790742 885..913 100 <- Minus
arm_2L 6790799..6790967 716..884 99 <- Minus
arm_2L 6791031..6791323 423..715 99 <- Minus

BS07463.complete Sequence

1004 bp (1004 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635874

> BS07463.complete
GAAGTTATCAGTCGACATGCCTACCATAACCGAGGATTGCATAGATGGAT
TCCAACAGTACTACTCGCGGCCACCGGAGAGGCCCAAGAAGAAGTCCCTG
AAGCAGATGGTCTACGACTCGGAGGACAACTCCTACTTCGGACGCTCGAT
GGACAGCTGGGCCAAAATCGGAATCTTCTATGTGGCCTTCTACGGAGTCC
TAGCCGCCCTCGTTGCCATCTGCATGTGGGCCTTCTTCCAAACTCTCGAT
CCTCGCATTCCCAAGTGGACCCTGGACCGTTCCCTGATAGGTACAAATCC
AGGTCTAGGTTTTCGACCCCTGCCACCGGTGGACAATGTGGAAAGCACTT
TGATCTGGTACAAGGGCACCCAACACGAGAACTACAAGCACTGGACAGAC
TCCCTGGATGATTTCCTTGCGGTGTACAAAGTACCTGGTCTAACACCCGG
CCGTGGTCAGAACATCTACAACTGCGACTACAACCAGCCGCCGCCAAAGG
GTCAGGTGTGCGACGTGGACATCAAGACGTGGTCGCCGTGCACCAAGGAG
AATAACTACAGCTACCACAAGAGTGCGCCGTGTATCTTCCTCAAGCTGAA
CAAGATCTACGGCTGGATTCCGGAGTACTACAACAGATCGAATGACTTGC
CCGCGAACATGCCCGCCAGCTTGAAGACCTACATCGCAGAGGTCGAGAAG
ACGCAGCCAGAAAAGCTAAACACCATTTGGGTATCGTGCGAGGGCGAGAA
CCCAGCCGACCAGGAGAACATTGGTGCTGTCAACTACCTGCCAATCAGGG
GATTCCCCGGCTACTTCTATCCCTACCAGAACTCCGAGGGCTACTTGAGT
CCCCTGGTGGCGGTGCACTTCCAGCGCCCCAAACGCGGAATCATCATCAA
CGTGGAGTGCAGGGCTTGGGCTCGCAACATCATACACGATCGCAAGGAGA
GAATCGGATCGGTGCACTATGAGCTCCTCATTGATTAAAAGCTTTCTAGA
CCAT

BS07463.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
nrv2-RG 972 CG9261-PG 1..972 17..988 4860 100 Plus
nrv2-RF 972 CG9261-PF 1..972 17..988 4860 100 Plus
nrv2-RC 972 CG9261-PC 1..972 17..988 4860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:57
Subject Length Description Subject Range Query Range Score Percent Strand
nrv2-RG 2635 CG9261-RG 795..1767 17..989 4865 100 Plus
nrv2-RF 2143 CG9261-RF 303..1275 17..989 4865 100 Plus
nrv2-RC 2668 CG9261-RC 828..1800 17..989 4865 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6791031..6791328 715..418 1475 99.7 Minus
2L 23513712 2L 6790798..6790969 885..714 860 100 Minus
2L 23513712 2L 6796337..6796481 161..17 725 100 Minus
2L 23513712 2L 6791699..6791842 304..161 720 100 Minus
2L 23513712 2L 6791518..6791640 422..300 615 100 Minus
2L 23513712 2L 6790638..6790742 989..885 525 100 Minus
Blast to na_te.dros performed 2014-11-28 01:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 925..961 877..912 119 83.8 Plus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 4633..4686 263..210 117 68.5 Minus

BS07463.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:47 Download gff for BS07463.complete
Subject Subject Range Query Range Percent Splice Strand
nrv2-RF 1..972 17..988 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:54 Download gff for BS07463.complete
Subject Subject Range Query Range Percent Splice Strand
nrv2-RF 295..1274 11..994 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:37 Download gff for BS07463.complete
Subject Subject Range Query Range Percent Splice Strand
nrv2-RC 828..1797 17..986 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:47 Download gff for BS07463.complete
Subject Subject Range Query Range Percent Splice Strand
nrv2-RF 295..1274 11..994 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:04 Download gff for BS07463.complete
Subject Subject Range Query Range Percent Splice Strand
nrv2-RC 828..1797 17..986 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:04 Download gff for BS07463.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6790641..6790742 885..986 100 <- Minus
2L 6790799..6790967 716..884 100 <- Minus
2L 6791031..6791323 423..715 100 <- Minus
2L 6791518..6791637 303..422 100 <- Minus
2L 6791701..6791841 162..302 100 <- Minus
2L 6796337..6796481 17..161 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:37 Download gff for BS07463.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6790799..6790967 716..884 100 <- Minus
arm_2L 6790641..6790742 885..986 100 <- Minus
arm_2L 6791031..6791323 423..715 100 <- Minus
arm_2L 6791518..6791637 303..422 100 <- Minus
arm_2L 6791701..6791841 162..302 100 <- Minus
arm_2L 6796337..6796481 17..161 100   Minus

BS07463.pep Sequence

Translation from 16 to 987

> BS07463.pep
MPTITEDCIDGFQQYYSRPPERPKKKSLKQMVYDSEDNSYFGRSMDSWAK
IGIFYVAFYGVLAALVAICMWAFFQTLDPRIPKWTLDRSLIGTNPGLGFR
PLPPVDNVESTLIWYKGTQHENYKHWTDSLDDFLAVYKVPGLTPGRGQNI
YNCDYNQPPPKGQVCDVDIKTWSPCTKENNYSYHKSAPCIFLKLNKIYGW
IPEYYNRSNDLPANMPASLKTYIAEVEKTQPEKLNTIWVSCEGENPADQE
NIGAVNYLPIRGFPGYFYPYQNSEGYLSPLVAVHFQRPKRGIIINVECRA
WARNIIHDRKERIGSVHYELLID*

BS07463.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:41
Subject Length Description Subject Range Query Range Score Percent Strand
nrv2-PG 323 CG9261-PG 1..323 1..323 1792 100 Plus
nrv2-PF 323 CG9261-PF 1..323 1..323 1792 100 Plus
nrv2-PC 323 CG9261-PC 1..323 1..323 1792 100 Plus
nrv2-PE 322 CG9261-PE 21..322 22..323 1589 94.7 Plus
nrv2-PA 322 CG9261-PA 21..322 22..323 1589 94.7 Plus