Clone BS07464 Report

Search the DGRC for BS07464

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG3121-RA
Protein status:BS07464.pep: full length peptide match
Sequenced Size:2159

Clone Sequence Records

BS07464.complete Sequence

2159 bp assembled on 2010-07-15

GenBank Submission: KX801829

> BS07464.complete
GAAGTTATCAGTCGACATGGACAGGGATTCCTGCCAAAATTTCTCATTAG
ACTCCACGAGCAGTTCCCATTTTGCTCCTCCGCCAGTTTGCGCGCCCAGA
AGGAAGAAGCCGGAGAAGCCCGCAGCTGAGGAGGCATCTCCCGAATGCTC
CAACGTCACATCGTCATCCTCGTCCTCGACAACCACCATATCCATAGGCG
CCTTCGATTCGCAATGCAACCTCCACAACGCCCGGAATCCCGAGGCCCCG
AACATTGGCTATGAGTTGAACGTGGCCAAGTCCATATTGCAGAAGTATAG
CACCCTCAGTGGGGACAACTTGTTCGATCATCTTAGTGACATCATAAAGA
GGGTGATTGACGAACGTCCTCCGAATGTGATAGACTTCTTCGAGGAATTT
AGCCGAAATGTTCGCGAACAGAAGTTCCACTTGCCAGAACGCTTTCCGCC
CAGTGGCGTGTTCGATGAGGTGCGATCTTTCCGGGTGGCCAAGAAAATTC
TCCAATCCATGAAGCTGCCCTATGTCGTTGAGGGTGAGGATCTGATGGGC
GAAGACCTGTCCGTCGAGGATTTGAGAACGAACGAGGATATGCGCATTGT
CATCGACGATTCCATGCGATACTTCGTCACATTCAACGAGCGAGTCCAGC
AGCTGCAGTTCTATTGGACACAGTGCGGATTTAGCATCAGCAACGACGAC
ATCTTCCAGCTGGCCAGCGCCATGAACCGGCTGCAGACGCATCCCTCGAT
CATGCAATGCAGATTCTGGGGCTGCATCAACGGACTGAAGGCCTCTTACT
ACATAGTGGAAGCTTCGCTCACCCGCGAGGAAATCGCCTCGCGCTTGGTC
ATGATGGAGGAAGAGATGCGGCAGAAGCAGATTCCGTTCCCGATGCGCAA
GGACAGGGAGGACAAGCCACCGCCGGCGCACATTGGGCCGGAGCTCACAC
CGGGCATCTATGGCTGGGAGGAATTTCCGCCTGAGGAGCTCGAGAAGATG
AAGCCCAAGGCTGCGCCCGTTCCCCTGGTGGAGGAGATGGAGCTCTACGA
CATTCCACCGGAGTTCATTGGCAAGGGCTGCAATAGGTACTCCTATTTCG
TTGTGAACTCGCTATTTGACGACTGGATCGAACTACCTATAGTGACCCCT
CGACAGATTGTCGTTTCGCGGCAGATCAAGAAGTTCCTAACAGGCGATCT
GGAGGCGGATGTCATATCCTACCCCTGCTTCCCTGGAAAGGAGAAACATT
ACCTACGGACTCTGATAGGTCGCATCACAGCGGGTACCTACATCGCTCCT
GTGGGCTACTACAGGCGCATGACCAAGAAGGAGCAGCGGATGTTCGATGG
CGAGGAAGAAGAAGAGGGCGAGGAGGAGGAGGAGGAAGAAGAGGAGGAGG
AGTTCAACGAAGGCGAGGAGGAGCAAATAGAAGATAACGACGTAATGCTT
TTGAAAAACGAGAAGTACGAGGCGGAACCACTGGGTTCTCTGGCCACCCC
GGTTGCTTGGGTTCATGTCAGGTCCAATATTCTGAACCAACAAGGCCGCG
TTGTCTGGTACGACGAGGAGAAGGCCCGCAAGGAGCGCGAAAAGGCACTG
GCCCTGTACCTGAAGATGCAGATGCTGGGCGAGATGGAAGAGGAGGTGGA
GGAGGAGGAGGATGAGGAAGAAGGCGAGGAGGAGGGCGAAGAAGAGGGCA
TGATCGAGGGCTTCAATCAGCCCGAACTGGGTCCCAGTATCCTCTCCTCC
TGTGCCAATGACATGAACCCCGAGGTGCCAGTTTCCTGGCTCGCCCGCAT
GACCAGCAAGTACACGAATCAGAAGGAGCGAATGCTCGTGATGCAGTCGA
ACGTCTGGCCAGGCGCCTACACGTTCATCTTTGAGAAGACCTGCGAGTCG
ATATACTTGGGCTGGGGCCACAAGTACTACGCCCGCAATATTCCCTTCAA
GCACTTGCCGATGGTGCAGGAGGAGTTCCCCCACAACCCAGAGGACTTCG
TCGAGGCCAACGATCCGACTGTCGAGGAGGAGGAAGCTTACAAGGCTTGG
CTCCTCCGGAAGCAGCAGAAGGCCGAGTATGTGGCCGAAGACATCGAAGA
CTACGATGATGACGAGTTCGCCGATCAGTATGACGACGACTGAAAGCTTT
CTAGACCAT

BS07464.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:46:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3121-RA 2127 CG3121-PA 1..2127 17..2143 10635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:46:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3121-RA 2284 CG3121-RA 94..2220 17..2143 10635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24018149..24019069 513..1433 4605 100 Plus
2R 25286936 2R 24019121..24019832 1432..2143 3560 100 Plus
2R 25286936 2R 24017514..24017820 17..323 1535 100 Plus
2R 25286936 2R 24017901..24018093 322..514 965 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:46:29 has no hits.

BS07464.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 09:48:34 Download gff for BS07464.complete
Subject Subject Range Query Range Percent Splice Strand
CG3121-RA 94..2219 17..2142 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:04:23 Download gff for BS07464.complete
Subject Subject Range Query Range Percent Splice Strand
CG3121-RA 94..2219 17..2142 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:36:40 Download gff for BS07464.complete
Subject Subject Range Query Range Percent Splice Strand
CG3121-RA 94..2219 17..2142 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:36:40 Download gff for BS07464.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24017514..24017818 17..321 100 -> Plus
2R 24017901..24018093 322..514 100 -> Plus
2R 24018151..24019069 515..1433 100 -> Plus
2R 24019123..24019831 1434..2142 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:04:23 Download gff for BS07464.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19905037..19905341 17..321 100 -> Plus
arm_2R 19905424..19905616 322..514 100 -> Plus
arm_2R 19905674..19906592 515..1433 100 -> Plus
arm_2R 19906646..19907354 1434..2142 100   Plus

BS07464.3prime Sequence

956 bp (760 high quality bases) assembled on 2006-01-06

> BS07464.3prime
ATGGTCTAGAAAGCTTTCAGTCGTCGTCATACTGATCGGCGAACTCGTCA
TCATCGTAGTCTTCGATGTCTTCGGCCACATACTCGGCCTTCTGCTGCTT
CCGGAGGAGCCAAGCCTTGTAAGCTTCCTCCTCCTCGACAGTCGGATCGT
TGGCCTCGACGAAGTCCTCTGGGTTGTGGGGGAACTCCTCCTGCACCATC
GGCAAGTGCTTGAAGGGAATATTGCGGGCGTAGTACTTGTGGCCCCAGCC
CAAGTATATCGACTCGCAGGTCTTCTCAAAGATGAACGTGTAGGCGCCTG
GCCAGACGTTCGACTGCATCACGAGCATTCGCTCCTTCTGATTCGTGTAC
TTGCTGGTCATGCGGGCGAGCCAGGAAACTGGCACCTCGGGGTTCATGTC
ATTGGCACAGGAGGAGAGGATACTGGGACCCAGTTCGGGCTGATTGAAGC
CCTCGATCATGCCCTCTTCTTCGCCCTCCTCCTCGCCTTCTTCCTCATCC
TCCTCCTCCTCCACCTCCTCTTCCATCTCGCCCAGCATCTGCATCTTCAG
GTACAGGGCCAGTGCCTTTTCGCGCTCCTTGCGGGCCTTCTCCTCGTCGT
ACCAGACAACGCGGCCTTGTTGGTTCAGAATATTGGACCTGACATGAACC
CAAGCAACCGGGGTGGCCAGAGAACCCAGTGGTTCCGCCTCGTACTTCTC
GTTTTTCAAAAGCATTACGTCGTTATCTTCTATTTGCTCCTCCTCGCCTT
CGTTGAACTCCTCCTCCTCTTCTTCCTCCTCCTCCTCCTCGCCCTCTTCT
TCTTCCTCGCCATCGAACATCCGCTGCTCCTTCTTGGTCATGCGCCTGTA
GTAGCCCACAGGAGCGATGTANGTACCCGCTGTGATGCGACCTATCAGAG
TCCGTAAGTAATGTTTCTCCTTTCCAGGGAAGCAGGGGTAGGATATGACA
TCCGCC

BS07464.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3121-PA 2127 CG3121-RA 1188..2127 956..17 4656 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:58:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG3121-RA 2284 CG3121-RA 1281..2220 956..17 4674 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24019121..24019832 728..17 3560 100 Minus
2R 25286936 2R 24018840..24019069 956..727 1124 99.1 Minus
Blast to na_te.dros performed on 2015-02-11 09:58:02 has no hits.

BS07464.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:38 Download gff for BS07464.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3121-PA 1188..2127 17..956 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:04:04 Download gff for BS07464.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3121-PA 1188..2127 17..956 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:00:01 Download gff for BS07464.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3121-RA 1281..2223 11..956 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:11:53 Download gff for BS07464.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3121-RA 1281..2223 11..956 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:11:53 Download gff for BS07464.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24018840..24019069 727..956 99 -> Minus
2R 24019123..24019835 11..726 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:00:01 Download gff for BS07464.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19906363..19906592 727..956 99 -> Minus
arm_2R 19906646..19907358 11..726 99   Minus

BS07464.5prime Sequence

775 bp (774 high quality bases) assembled on 2006-01-06

> BS07464.5prime
GAAGTTATCAGTCGACATGGACAGGGATTCCTGCCAAAATTTCTCATTAG
ACTCCACGAGCAGTTCCCATTTTGCTCCTCCGCCAGTTTGCGCGCCCAGA
AGGAAGAAGCCGGAGAAGCCCGCAGCTGAGGAGGCATCTCCCGAATGCTC
CAACGTCACATCGTCATCCTCGTCCTCGACAACCACCATATCCATAGGCG
CCTTCGATTCGCAATGCAACCTCCACAACGCCCGGAATCCCGAGGCCCCG
AACATTGGCTATGAGTTGAACGTGGCCAAGTCCATATTGCAGAAGTATAG
CACCCTCAGTGGGGACAACTTGTTCGATCATCTTAGTGACATCATAAAGA
GGGTGATTGACGAACGTCCTCCGAATGTGATAGACTTCTTCGAGGAATTT
AGCCGAAATGTTCGCGAACAGAAGTTCCACTTGCCAGAACGCTTTCCGCC
CAGTGGCGTGTTCGATGAGGTGCGATCTTTCCGGGTGGCCAAGAAAATTC
TCCAATCCATGAAGCTGCCCTATGTCGTTGAGGGTGAGGATCTGATGGGC
GAAGACCTGTCCGTCGAGGATTTGAGAACGAACGAGGATATGCGCATTGT
CATCGACGATTCCATGCGATACTTCGTCACATTCAACGAGCGAGTCCAGC
AGCTGCAGTTCTATTGGACACAGTGCGGATTTAGCATCAGCAACGACGAC
ATCTTCCAGCTGGCCAGCGCCATGAACCGGCTGCAGACGCATCCCTCGAT
CATGCAATGCAGATTCTGGGGCTGC

BS07464.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3121-PA 2127 CG3121-RA 1..759 17..775 3795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG3121-RA 2284 CG3121-RA 94..852 17..775 3795 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24017514..24017820 17..323 1535 100 Plus
2R 25286936 2R 24018149..24018411 513..775 1315 100 Plus
2R 25286936 2R 24017901..24018093 322..514 965 100 Plus
Blast to na_te.dros performed on 2015-02-04 01:52:02 has no hits.

BS07464.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:39 Download gff for BS07464.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3121-PA 1..759 17..775 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:04:05 Download gff for BS07464.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3121-PA 1..759 17..775 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:45:10 Download gff for BS07464.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3121-RA 87..852 9..775 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:32:32 Download gff for BS07464.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3121-RA 87..852 9..775 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:32:32 Download gff for BS07464.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24017507..24017818 9..321 99 -> Plus
2R 24017901..24018093 322..514 100 -> Plus
2R 24018151..24018411 515..775 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:45:10 Download gff for BS07464.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19905030..19905341 9..321 99 -> Plus
arm_2R 19905424..19905616 322..514 100 -> Plus
arm_2R 19905674..19905934 515..775 100   Plus

BS07464.pep Sequence

Translation from 16 to 2142

> BS07464.pep
MDRDSCQNFSLDSTSSSHFAPPPVCAPRRKKPEKPAAEEASPECSNVTSS
SSSSTTTISIGAFDSQCNLHNARNPEAPNIGYELNVAKSILQKYSTLSGD
NLFDHLSDIIKRVIDERPPNVIDFFEEFSRNVREQKFHLPERFPPSGVFD
EVRSFRVAKKILQSMKLPYVVEGEDLMGEDLSVEDLRTNEDMRIVIDDSM
RYFVTFNERVQQLQFYWTQCGFSISNDDIFQLASAMNRLQTHPSIMQCRF
WGCINGLKASYYIVEASLTREEIASRLVMMEEEMRQKQIPFPMRKDREDK
PPPAHIGPELTPGIYGWEEFPPEELEKMKPKAAPVPLVEEMELYDIPPEF
IGKGCNRYSYFVVNSLFDDWIELPIVTPRQIVVSRQIKKFLTGDLEADVI
SYPCFPGKEKHYLRTLIGRITAGTYIAPVGYYRRMTKKEQRMFDGEEEEE
GEEEEEEEEEEEFNEGEEEQIEDNDVMLLKNEKYEAEPLGSLATPVAWVH
VRSNILNQQGRVVWYDEEKARKEREKALALYLKMQMLGEMEEEVEEEEDE
EEGEEEGEEEGMIEGFNQPELGPSILSSCANDMNPEVPVSWLARMTSKYT
NQKERMLVMQSNVWPGAYTFIFEKTCESIYLGWGHKYYARNIPFKHLPMV
QEEFPHNPEDFVEANDPTVEEEEAYKAWLLRKQQKAEYVAEDIEDYDDDE
FADQYDDD*

BS07464.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:27:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3121-PA 708 CG3121-PA 1..708 1..708 3757 100 Plus