Clone BS07466 Report

Search the DGRC for BS07466

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:74
Well:66
Vector:pDNR-Dual
Associated Gene/Transcriptsax-RB
Protein status:BS07466.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS07466.3prime Sequence

968 bp (846 high quality bases) assembled on 2006-01-06

> BS07466.3prime
ATGGTCTAGAAAGCTTCTAAACGCAGACCTCGTCGAAGTCCAGGCGTATC
TTCTCGTCAGCGGAAGCCAGCTTATGTATAGTCTTTTTGATGCGCAGCGC
TGGCAAGCGCACGTCGGGGTTTTGGTGCCAGCACTCCTTCATGAGCTTGG
ACATGCCAGTCATTAACGAATCCGAGCTCCAGCGATTGGGAATGGAGGGC
CTGTAGTTGTCGATGCAGACCACCTTGCGCATATCCTCGAAGCTGGGATC
CATTGGCACCACATCGTAGAAGGGCACCTTGTACTCCTCTGCTATGCCGC
AAGAAATGGTGCGGCGACAAACCTCCCAGAGGACAAGTCCAAATGCGTAA
ATATCTGTCCGGCGTAGTGCTTCGAAGCATTCTAAATCAATGCTTTCATC
AAGAACCTCTGGGGCCATGTAGCGCTTGGTGCCCACTTTGGGGTTGTTGC
CCAGGTCCAGTTGTCCTGTGACGTGCGAATGGGTAACGGCCAGTCCAAAA
TCGGCTATCACGCAGGAGCCGTTCGAGGTGACCAGTATATTCTTTGACTT
CAAATCGCGGTGGGCCATAGCTGGCTTGCCTTGCTTGCCGAATATCTCTG
TGTGCAAGTGTACCAGCCCATTAGCTATGGACAGGCAAATCCATACCATA
TCGTTGTGGCTTAGGGCGTTACGGTTTAGGTGATCAAAGAGCGAGCCCAG
TGGATAGTAGTGCGTCATCAGCCAAAGTTGGGTGCACGAGTTCCGCGACG
TCATGTCAGAGCCGATGAATCCCAGAATATTTTCATGTCGTAGCAATATG
GTGCTATATATCTCTGTCTCCCGCTTCCAGGACTCCTCGTCGCGACTGAA
GAATATCTTCACGGCGATGCTTTCGCCATGCCAGTGACCGCGCCAAACCT
CGCCCGTATTGCCTCGTCCAATGCACTCGATCAGGTTGACCTGTTTGGCT
AGCGTACGCTGCACTAGC

BS07466.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1891-PA 1713 sax-RA 826..1713 904..17 4440 100 Minus
CG1891-PB 1608 sax-RB 721..1608 904..17 4440 100 Minus
CG1891-PA 1713 sax-RA 762..821 968..909 275 98.3 Minus
CG1891-PB 1608 sax-RB 657..716 968..909 275 98.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:15:49
Subject Length Description Subject Range Query Range Score Percent Strand
sax-RC 2451 CG1891-RC 852..1803 968..17 4700 99.7 Minus
sax-RB 2716 CG1891-RB 1117..2068 968..17 4700 99.7 Minus
sax-RA 2415 CG1891-RA 816..1767 968..17 4700 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:15:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7808508..7808920 805..393 2065 100 Minus
2R 25286936 2R 7808980..7809211 394..163 1145 99.6 Minus
2R 25286936 2R 7809269..7809419 167..17 755 100 Minus
2R 25286936 2R 7808202..7808366 968..804 750 97 Minus
Blast to na_te.dros performed 2015-02-11 16:15:45
Subject Length Description Subject Range Query Range Score Percent Strand
Fw2 3961 Fw2 FW2 3961bp 1028..1072 221..178 114 75.6 Minus
Porto1 4682 Porto1 DOC5 4682bp 3641..3736 440..349 110 60.4 Minus

BS07466.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:42 Download gff for BS07466.3prime
Subject Subject Range Query Range Percent Splice Strand
sax-PA 762..1713 17..968 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:04:08 Download gff for BS07466.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1891-PB 657..1608 17..968 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:41:15 Download gff for BS07466.3prime
Subject Subject Range Query Range Percent Splice Strand
sax-RA 816..1767 17..968 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:45 Download gff for BS07466.3prime
Subject Subject Range Query Range Percent Splice Strand
sax-RA 816..1767 17..968 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:45 Download gff for BS07466.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7808202..7808366 804..968 98 -> Minus
2R 7808510..7808920 393..803 100 -> Minus
2R 7808982..7809207 167..392 100 -> Minus
2R 7809270..7809419 17..166 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:41:15 Download gff for BS07466.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3695707..3695871 804..968 98 -> Minus
arm_2R 3696015..3696425 393..803 100 -> Minus
arm_2R 3696487..3696712 167..392 100 -> Minus
arm_2R 3696775..3696924 17..166 100   Minus

BS07466.5prime Sequence

950 bp (809 high quality bases) assembled on 2006-01-06

> BS07466.5prime
GAAGTTATCAGTCGACATGGAGCTCTCCTCCGCCTCATCCGCCCATCTCA
ATGGCAAGGAGCTACCGGCCGTGCCACAGAACTCGGTGCAGACGCATCCC
AGATACAAATGCTACTCCTGCGAGCCGCCCTGTCGGGATCCCTATGAGTT
TACCCACACCTGCCAGAATGCGATTCAGTGCTGGAAGTCGCGCACACGCG
ATGCCGATGGTCAGGTGCAGGAGTCACGCGGCTGCAGCACCTCGCCGGAT
CAACTGCCCATGATCTGCAGCCAGAACTCCTTGAAGATCAACGGGCCCAG
TAAACGCAATACGGGGAAGTTCGTGAATGTGGTCTGCTGTGCCGGTGATT
ACTGCAATGAGGGAGACTTTCCGGAACTGCTGCCCTTCGACAGCAATGAT
GTGACGGTGATAACCGCGGATACCAGTAGCATAAGCAAGATGCTCGTCGC
CGTTCTGGGTCCTTTTCTGGTCATCGCTCTGCTGGGCGCCGTGACCATCT
TCTTCATTCGTCGTAGCCATCGCAAGCGTCTGGCTGCCTCGCGAACCAAA
CAGGACCCGGAAGCGTATCTGGTCAATGATGAGCTGCTCCGCGCCACCAG
CGCCGGGGACAGTACGCTGAGGGAGTATCTGCAGCACTCGGTGACCTCCG
GCTCGGGCAGCGGATTGCCGCTGCTAGTGCAGCGTACGCTAGCCAAACAG
GTCACCCTGATCGAGTGCATTGGACGAGGCAAATACGGCGAGGTTTGGCG
CGGTCACTGGCATGGCGAAAGCATCGCCGTGAAGATATTCTTCAGTCGCG
ACGAGGAGTCCTGGAAGCGGGAGACAGAGATATATAGCACCATATTGCTA
CGACATGAAAATATTCTGGGATTCATCGGCTCTGACATGACGTCGCGGAA
CTCGTGCACCCAACTTTGGCTGATGACGCACTACTATCCACTGGGCTCGC

BS07466.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1891-PA 1713 sax-RA 103..1039 14..950 4685 100 Plus
CG1891-PB 1608 sax-RB 1..934 17..950 4670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:17:10
Subject Length Description Subject Range Query Range Score Percent Strand
sax-RB 2716 CG1891-RB 458..1394 14..950 4685 100 Plus
sax-RA 2415 CG1891-RA 157..1093 14..950 4685 100 Plus
sax-RC 2451 CG1891-RC 280..1129 101..950 4250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:17:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7807705..7808366 176..837 3310 100 Plus
2R 25286936 2R 7808508..7808622 836..950 575 100 Plus
2R 25286936 2R 7807113..7807201 14..102 445 100 Plus
2R 25286936 2R 7807566..7807644 100..178 395 100 Plus
Blast to na_te.dros performed 2015-02-11 09:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
opus 7521 opus OPUS 7521bp 3516..3616 48..154 115 62 Plus

BS07466.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:43 Download gff for BS07466.5prime
Subject Subject Range Query Range Percent Splice Strand
sax-PA 103..1039 14..950 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:04:10 Download gff for BS07466.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1891-PA 103..1039 14..950 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:05:36 Download gff for BS07466.5prime
Subject Subject Range Query Range Percent Splice Strand
sax-RA 157..1093 14..950 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:39:18 Download gff for BS07466.5prime
Subject Subject Range Query Range Percent Splice Strand
sax-RA 157..1093 14..950 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:39:18 Download gff for BS07466.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7807113..7807201 14..102 100 -> Plus
2R 7807569..7807644 103..178 100 -> Plus
2R 7807708..7808366 179..837 100 -> Plus
2R 7808510..7808622 838..950 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:05:36 Download gff for BS07466.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3694618..3694706 14..102 100 -> Plus
arm_2R 3695074..3695149 103..178 100 -> Plus
arm_2R 3695213..3695871 179..837 100 -> Plus
arm_2R 3696015..3696127 838..950 100   Plus

BS07466.complete Sequence

1640 bp (1640 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ635876

> BS07466.complete
GAAGTTATCAGTCGACATGGAGCTCTCCTCCGCCTCATCCGCCCATCTCA
ATGGCAAGGAGCTACCGGCCGTGCCACAGAACTCGGTGCAGACGCATCCC
AGATACAAATGCTACTCCTGCGAGCCGCCCTGTCGGGATCCCTATGAGTT
TACCCACACCTGCCAGAATGCGATTCAGTGCTGGAAGTCGCGCACACGCG
ATGCCGATGGTCAGGTGCAGGAGTCACGCGGCTGCAGCACCTCGCCGGAT
CAACTGCCCATGATCTGCAGCCAGAACTCCTTGAAGATCAACGGGCCCAG
TAAACGCAATACGGGGAAGTTCGTGAATGTGGTCTGCTGTGCCGGTGATT
ACTGCAATGAGGGAGACTTTCCGGAACTGCTGCCCTTCGACAGCAATGAT
GTGACGGTGATAACCGCGGATACCAGTAGCATAAGCAAGATGCTCGTCGC
CGTTCTGGGTCCTTTTCTGGTCATCGCTCTGCTGGGCGCCGTGACCATCT
TCTTCATTCGTCGTAGCCATCGCAAGCGTCTGGCTGCCTCGCGAACCAAA
CAGGACCCGGAAGCGTATCTGGTCAATGATGAGCTGCTCCGCGCCACCAG
CGCCGGGGACAGTACGCTGAGGGAGTATCTGCAGCACTCGGTGACCTCCG
GCTCGGGCAGCGGATTGCCGCTGCTAGTGCAGCGTACGCTAGCCAAACAG
GTCACCCTGATCGAGTGCATTGGACGAGGCAAATACGGCGAGGTTTGGCG
CGGTCACTGGCATGGCGAAAGCATCGCCGTGAAGATATTCTTCAGTCGCG
ACGAGGAGTCCTGGAAGCGGGAGACAGAGATATATAGCACCATATTGCTA
CGACATGAAAATATTCTGGGATTCATCGGCTCTGACATGACGTCGCGGAA
CTCGTGCACCCAACTTTGGCTGATGACGCACTACTATCCACTGGGCTCGC
TCTTTGATCACCTAAACCGTAACGCCCTAAGCCACAACGATATGGTATGG
ATTTGCCTGTCCATAGCTAATGGGCTGGTACACTTGCACACAGAGATATT
CGGCAAGCAAGGCAAGCCAGCTATGGCCCACCGCGATTTGAAGTCAAAGA
ATATACTGGTCACCTCGAACGGCTCCTGCGTGATAGCCGATTTTGGACTG
GCCGTTACCCATTCGCACGTCACAGGACAACTGGACCTGGGCAACAACCC
CAAAGTGGGCACCAAGCGCTACATGGCCCCAGAGGTTCTTGATGAAAGCA
TTGATTTAGAATGCTTCGAAGCACTACGCCGGACAGATATTTACGCATTT
GGACTTGTCCTCTGGGAGGTTTGTCGCCGCACCATTTCTTGCGGCATAGC
AGAGGAGTACAAGGTGCCCTTCTACGATGTGGTGCCAATGGATCCCAGCT
TCGAGGATATGCGCAAGGTGGTCTGCATCGACAACTACAGGCCCTCCATT
CCCAATCGCTGGAGCTCGGATTCGTTAATGACTGGCATGTCCAAGCTCAT
GAAGGAGTGCTGGCACCAAAACCCCGACGTGCGCTTGCCAGCGCTGCGCA
TCAAAAAGACTATACATAAGCTGGCTTCCGCTGACGAGAAGATACGCCTG
GACTTCGACGAGGTCTGCGTTTAGAAGCTTTCTAGACCAT

BS07466.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
sax-RA 1713 CG1891-PA 103..1713 14..1624 8055 100 Plus
sax-RB 1608 CG1891-PB 1..1608 17..1624 8040 100 Plus
sax-RC 1749 CG1891-PC 226..1749 101..1624 7620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
sax-RB 2716 CG1891-RB 458..2068 14..1624 8055 100 Plus
sax-RA 2415 CG1891-RA 157..1767 14..1624 8055 100 Plus
sax-RC 2451 CG1891-RC 280..1803 101..1624 7620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:05:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7807705..7808366 176..837 3310 100 Plus
2R 25286936 2R 7808508..7808920 836..1248 2065 100 Plus
2R 25286936 2R 7808980..7809211 1247..1478 1145 99.6 Plus
2R 25286936 2R 7809269..7809419 1474..1624 755 100 Plus
2R 25286936 2R 7807113..7807201 14..102 445 100 Plus
2R 25286936 2R 7807566..7807644 100..178 395 100 Plus
Blast to na_te.dros performed 2014-11-26 22:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
opus 7521 opus OPUS 7521bp 3516..3616 48..154 115 62 Plus
Fw2 3961 Fw2 FW2 3961bp 1028..1072 1420..1463 114 75.6 Plus

BS07466.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:48 Download gff for BS07466.complete
Subject Subject Range Query Range Percent Splice Strand
sax-RA 103..1713 14..1624 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:56 Download gff for BS07466.complete
Subject Subject Range Query Range Percent Splice Strand
sax-RB 458..2068 14..1624 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:46:17 Download gff for BS07466.complete
Subject Subject Range Query Range Percent Splice Strand
sax-RA 160..1767 17..1624 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:49 Download gff for BS07466.complete
Subject Subject Range Query Range Percent Splice Strand
sax-RB 458..2068 14..1624 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:50:50 Download gff for BS07466.complete
Subject Subject Range Query Range Percent Splice Strand
sax-RA 160..1767 17..1624 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:50:50 Download gff for BS07466.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7807116..7807201 17..102 100 -> Plus
2R 7807569..7807644 103..178 100 -> Plus
2R 7807708..7808366 179..837 100 -> Plus
2R 7808510..7808920 838..1248 100 -> Plus
2R 7808982..7809207 1249..1474 100 -> Plus
2R 7809270..7809419 1475..1624 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:46:17 Download gff for BS07466.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3694621..3694706 17..102 100 -> Plus
arm_2R 3695074..3695149 103..178 100 -> Plus
arm_2R 3695213..3695871 179..837 100 -> Plus
arm_2R 3696015..3696425 838..1248 100 -> Plus
arm_2R 3696487..3696712 1249..1474 100 -> Plus
arm_2R 3696775..3696924 1475..1624 100   Plus

BS07466.pep Sequence

Translation from 16 to 1623

> BS07466.pep
MELSSASSAHLNGKELPAVPQNSVQTHPRYKCYSCEPPCRDPYEFTHTCQ
NAIQCWKSRTRDADGQVQESRGCSTSPDQLPMICSQNSLKINGPSKRNTG
KFVNVVCCAGDYCNEGDFPELLPFDSNDVTVITADTSSISKMLVAVLGPF
LVIALLGAVTIFFIRRSHRKRLAASRTKQDPEAYLVNDELLRATSAGDST
LREYLQHSVTSGSGSGLPLLVQRTLAKQVTLIECIGRGKYGEVWRGHWHG
ESIAVKIFFSRDEESWKRETEIYSTILLRHENILGFIGSDMTSRNSCTQL
WLMTHYYPLGSLFDHLNRNALSHNDMVWICLSIANGLVHLHTEIFGKQGK
PAMAHRDLKSKNILVTSNGSCVIADFGLAVTHSHVTGQLDLGNNPKVGTK
RYMAPEVLDESIDLECFEALRRTDIYAFGLVLWEVCRRTISCGIAEEYKV
PFYDVVPMDPSFEDMRKVVCIDNYRPSIPNRWSSDSLMTGMSKLMKECWH
QNPDVRLPALRIKKTIHKLASADEKIRLDFDEVCV*

BS07466.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
sax-PB 535 CG1891-PB 1..535 1..535 2852 100 Plus
sax-PA 570 CG1891-PA 36..570 1..535 2852 100 Plus
sax-PC 582 CG1891-PC 36..582 1..535 2829 97.8 Plus
babo-PC 595 CG8224-PC 123..594 20..527 1066 45.2 Plus
babo-PA 601 CG8224-PA 123..600 20..527 1052 44.1 Plus