Clone Sequence Records
BS07470.3prime Sequence
948 bp (833 high quality bases) assembled on 2006-01-06
> BS07470.3prime
ATGGTCTAGAAAGCTTCTAGTAGGCGGGCGACAACATGGGCTCCCCAGCC
AAACCGCGGAGCACATTATGGGCAGCAATGGTGGACATGTCGGCACGGGT
GCGCTTCGTGGCGGATCCAATATGGGGCAGGACAACAACATTGTCAAGCG
TCAGCAGCTTGTCCTTGGGCGACAATGGTTCCGGATCCGTGACGTCGAGT
CCGGCGGAAAAGATTCGGTTGGCTTTCAAAGCCTCGTAGAGGTCATCCTG
GTTGACGATTTTGCCCCTGGCAATGTTAACCAGCACAGCAGTCTGCTTCA
TCTTGTTGAAGGCGGTGGCATTAAAGACGCCCTGTGTGTCCTTCGTCAAA
GGAGAAGCGATCACTACGAAGTCACTCTCGGCCAGAAGGGTATCGAAGTC
AACTTTCTTGGCATTGAACTCCTCCTCGATCTCCTTGTGAACACGACGAC
GGGTGGTGTACAGCACCTTGTCAATGTCGAATCCAGACAAACGCTTGGCA
ATAGCCTGACCAATGCCTCCAAAGCCGTAGAATCCCACGGTGGAATCACG
AATATCCTGGCCCAACAGCCAGTTAAGATGGTAGTTTTCCCACTTGTCAT
TGTCGATGGTCTTGCGACCCTCGTGAAAACGGCGACTGGCGGCGATCAGG
AGACCCACTGCCAAATCGGCCACGGCGGTGTTGAGAACGGTGGGCGTGTG
TCCCAGCGGGATCTTACGTCTCTTTACCTCCGGCACATCGACGTAGTCGA
TTCCCGCCGACATGGTGGAGATGGATTTCAGCTGGGGACCGGCAGCATCG
AGGGCCTCGGCATTGAGGGGTTCGTGTCCACCCCAGAGAACGCCATCCAC
GCCACGGATTTTCTCCAGCAGCTCCGCCGGGTTGATGGGAACACTCTGCA
CCTGGACGATCTCGCAGTTCTCCCTCAGCAGATCAATGCCCTCCTGGG
BS07470.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9331-PD | 981 | CG9331-RD | 50..981 | 948..17 | 4610 | 99.7 | Minus |
| CG9331-PC | 1095 | CG9331-RC | 164..1095 | 948..17 | 4610 | 99.7 | Minus |
| CG9331-PE | 1101 | CG9331-RE | 170..1101 | 948..17 | 4610 | 99.7 | Minus |
| CG9331-PB | 981 | CG9331-RB | 50..981 | 948..17 | 4610 | 99.7 | Minus |
| CG9331-PA | 1095 | CG9331-RA | 164..1095 | 948..17 | 4610 | 99.7 | Minus |
| CG31674-PA | 984 | CG31674-RA | 419..497 | 582..504 | 220 | 91.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:11:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9331-RL | 1346 | CG9331-RL | 306..1237 | 948..17 | 4630 | 99.8 | Minus |
| CG9331-RK | 1512 | CG9331-RK | 452..1383 | 948..17 | 4630 | 99.8 | Minus |
| CG9331-RJ | 1309 | CG9331-RJ | 269..1200 | 948..17 | 4630 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:11:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20825739..20826087 | 948..600 | 1715 | 99.4 | Minus |
| 2L | 23513712 | 2L | 20826633..20826970 | 599..262 | 1690 | 100 | Minus |
| 2L | 23513712 | 2L | 20827032..20827157 | 261..136 | 630 | 100 | Minus |
| 2L | 23513712 | 2L | 20827496..20827615 | 136..17 | 600 | 100 | Minus |
| 2L | 23513712 | 2L | 20831946..20832287 | 603..262 | 570 | 77.8 | Minus |
Blast to na_te.dros performed on 2015-01-30 14:11:03 has no hits.
BS07470.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:51 Download gff for
BS07470.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-PE | 170..1101 | 17..948 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:04:20 Download gff for
BS07470.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-PA | 164..1095 | 17..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:00:24 Download gff for
BS07470.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RJ | 269..1206 | 11..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:32:28 Download gff for
BS07470.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RJ | 269..1206 | 11..948 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:32:28 Download gff for
BS07470.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20825739..20826087 | 600..948 | 99 | -> | Minus |
| 2L | 20826633..20826970 | 262..599 | 100 | -> | Minus |
| 2L | 20827032..20827157 | 136..261 | 100 | -> | Minus |
| 2L | 20827497..20827621 | 11..135 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:00:24 Download gff for
BS07470.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20825739..20826087 | 600..948 | 99 | -> | Minus |
| arm_2L | 20826633..20826970 | 262..599 | 100 | -> | Minus |
| arm_2L | 20827032..20827157 | 136..261 | 100 | -> | Minus |
| arm_2L | 20827497..20827621 | 11..135 | 97 | | Minus |
BS07470.5prime Sequence
904 bp (783 high quality bases) assembled on 2006-01-06
> BS07470.5prime
GAAGTTATCAGTCGACATGCTAAACAGGTTCATTGGTTTATCGGCTGCGA
TCGTGGGTCGGAGCAGTCGGATCAGCGGCTTTCCGTTCTCGCCGCTCCTT
AAAGCTGGAAATCAAAGCCAGAATCGCACCATGTCCGCTGGCAAGGCTTT
CAAGGTCCTGGTGACACATCCCGAGGTTCCCCAGGAGGGCATTGATCTGC
TGAAGGAGAACTGCGAGATCGTCCAGGTGCAGAGTGTTCCCATCAACCGG
GCGGAGCTGCTGGAGAAAATCCGTGGCGTGGATGGCGTTCTCTGGGGTGG
ACACGAACCCCTCAATGCCGAGGCCCTCGATGCTGCCGGTCCCCAGCTGA
AATCCATCTCCACCATGTCGGCGGGAATCGACTACGTCGATGTGCCGGAG
GTAAAGAGACGTAAGATCCCGCTGGGACACACGCCCACCGTTCTCAACAC
CGCCGTGGCCGATTTGGCAGTGGGTCTCCTGATCGCCGCCAGTCGCCGTT
TTCACGAGGGTCGCAAGACCATCGACAATGACAAGTGGGAAAACTACCAT
CTTAACTGGCTGTTGGGCCAGGATATTCGTGATTCCACCGTGGGATTCTA
CGGCTTTGGAGGCATTGGTCAGGCTATTGCCAAGCGTTTGTCTGGATTCG
ACATTGACAAGGTGCTGTACACCACCCGTCGTCGTGTTCACAAGGAGATC
GAGGAGGAGTTCAATGCCAAGAAAGTTGACTTCGATACCCTTCTGGCCGA
GAGTGACTTCGTAGTGATCGCTTCTCCTTTGACGAGGGACACACAGGGCG
TCTTTAATGCCACCGCCTTCAACAAGATGAAGCAGACTGCTGTGCTGGTT
AACATTGCCAGGGGCAAAATCGTCACCAGGATGACCTCTACGAGGCTTTG
AAAG
BS07470.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9331-PC | 1095 | CG9331-RC | 1..859 | 17..875 | 4270 | 99.8 | Plus |
| CG9331-PA | 1095 | CG9331-RA | 92..859 | 108..875 | 3815 | 99.8 | Plus |
| CG9331-PE | 1101 | CG9331-RE | 99..865 | 109..875 | 3810 | 99.8 | Plus |
| CG9331-PD | 981 | CG9331-RD | 1..745 | 131..875 | 3700 | 99.8 | Plus |
| CG9331-PB | 981 | CG9331-RB | 1..745 | 131..875 | 3700 | 99.8 | Plus |
| CG31674-PA | 984 | CG31674-RA | 419..497 | 546..624 | 220 | 91.1 | Plus |
| CG9331-PC | 1095 | CG9331-RC | 860..889 | 875..904 | 150 | 100 | Plus |
| CG9331-PA | 1095 | CG9331-RA | 860..889 | 875..904 | 150 | 100 | Plus |
| CG9331-PE | 1101 | CG9331-RE | 866..895 | 875..904 | 150 | 100 | Plus |
| CG9331-PD | 981 | CG9331-RD | 746..775 | 875..904 | 150 | 100 | Plus |
| CG9331-PB | 981 | CG9331-RB | 746..775 | 875..904 | 150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:25:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9331-RI | 1550 | CG9331-RI | 347..1235 | 17..904 | 4405 | 99.8 | Plus |
| CG9331-RH | 1413 | CG9331-RH | 210..1098 | 17..904 | 4405 | 99.8 | Plus |
| CG9331-RM | 1827 | CG9331-RM | 624..1512 | 17..904 | 4405 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:25:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20825667..20826087 | 108..528 | 2105 | 100 | Plus |
| 2L | 23513712 | 2L | 20826633..20826970 | 529..866 | 1675 | 99.7 | Plus |
| 2L | 23513712 | 2L | 20831946..20832287 | 525..866 | 555 | 77.5 | Plus |
| 2L | 23513712 | 2L | 20825421..20825512 | 17..108 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:25:17 has no hits.
BS07470.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:52 Download gff for
BS07470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-PC | 1..889 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:04:21 Download gff for
BS07470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-PC | 1..889 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:24:11 Download gff for
BS07470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RC | 318..1206 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:56:45 Download gff for
BS07470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RM | 624..1512 | 17..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:56:45 Download gff for
BS07470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20825421..20825512 | 17..108 | 100 | -> | Plus |
| 2L | 20825668..20826087 | 109..528 | 100 | -> | Plus |
| 2L | 20826633..20826970 | 529..866 | 99 | -> | Plus |
| 2L | 20827032..20827070 | 867..904 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:24:11 Download gff for
BS07470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20825421..20825512 | 17..108 | 100 | -> | Plus |
| arm_2L | 20825668..20826087 | 109..528 | 100 | -> | Plus |
| arm_2L | 20826633..20826970 | 529..866 | 99 | -> | Plus |
| arm_2L | 20827032..20827070 | 867..904 | 97 | | Plus |
BS07470.complete Sequence
1127 bp (1127 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ635878
> BS07470.complete
GAAGTTATCAGTCGACATGCTAAACAGGTTCATTGGTTTATCGGCTGCGA
TCGTGGGTCGGAGCAGTCGGATCAGCGGCTTTCCGTTCTCGCCGCTCCTT
AAAGCTGGAAATCAAAGCCAGAATCGCACCATGTCCGCTGGCAAGGCTTT
CAAGGTCCTGGTGACACATCCCGAGGTTCCCCAGGAGGGCATTGATCTGC
TGAAGGAGAACTGCGAGATCGTCCAGGTGCAGAGTGTTCCCATCAACCGG
GCGGAGCTGCTGGAGAAAATCCGTGGCGTGGATGGCGTTCTCTGGGGTGG
ACACGAACCCCTCAATGCCGAGGCCCTCGATGCTGCCGGTCCCCAGCTGA
AATCCATCTCCACCATGTCGGCGGGAATCGACTACGTCGATGTGCCGGAG
GTAAAGAGACGTAAGATCCCGCTGGGACACACGCCCACCGTTCTCAACAC
CGCCGTGGCCGATTTGGCAGTGGGTCTCCTGATCGCCGCCAGTCGCCGTT
TTCACGAGGGTCGCAAGACCATCGACAATGACAAGTGGGAAAACTACCAT
CTTAACTGGCTGTTGGGCCAGGATATTCGTGATTCCACCGTGGGATTCTA
CGGCTTTGGAGGCATTGGTCAGGCTATTGCCAAGCGTTTGTCTGGATTCG
ACATTGACAAGGTGCTGTACACCACCCGTCGTCGTGTTCACAAGGAGATC
GAGGAGGAGTTCAATGCCAAGAAAGTTGACTTCGATACCCTTCTGGCCGA
GAGTGACTTCGTAGTGATCGCTTCTCCTTTGACGAAGGACACACAGGGCG
TCTTTAATGCCACCGCCTTCAACAAGATGAAGCAGACTGCTGTGCTGGTT
AACATTGCCAGGGGCAAAATCGTCAACCAGGATGACCTCTACGAGGCTTT
GAAAGCCAACCGAATCTTTTCCGCCGGACTCGACGTCACGGATCCGGAAC
CATTGTCGCCCAAGGACAAGCTGCTGACGCTTGACAATGTTGTTGTCCTG
CCCCATATTGGATCCGCCACGAAGCGCACCCGTGCCGACATGTCCACCAT
TGCTGCCCATAATGTGCTCCGCGGTTTGGCTGGGGAGCCCATGTTGTCGC
CCGCCTACTAGAAGCTTTCTAGACCAT
BS07470.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:43:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9331-RI | 1095 | CG9331-PI | 1..1095 | 17..1111 | 5475 | 100 | Plus |
| CG9331-RH | 1095 | CG9331-PH | 1..1095 | 17..1111 | 5475 | 100 | Plus |
| CG9331-RM | 1095 | CG9331-PM | 1..1095 | 17..1111 | 5475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:43:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9331-RI | 1550 | CG9331-RI | 347..1441 | 17..1111 | 5475 | 100 | Plus |
| CG9331-RH | 1413 | CG9331-RH | 210..1304 | 17..1111 | 5475 | 100 | Plus |
| CG9331-RM | 1827 | CG9331-RM | 624..1718 | 17..1111 | 5475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:43:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20825667..20826087 | 108..528 | 2105 | 100 | Plus |
| 2L | 23513712 | 2L | 20826633..20826970 | 529..866 | 1690 | 100 | Plus |
| 2L | 23513712 | 2L | 20827032..20827157 | 867..992 | 630 | 100 | Plus |
| 2L | 23513712 | 2L | 20827496..20827615 | 992..1111 | 600 | 100 | Plus |
| 2L | 23513712 | 2L | 20831946..20832287 | 525..866 | 570 | 77.8 | Plus |
| 2L | 23513712 | 2L | 20825421..20825512 | 17..108 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:43:46 has no hits.
BS07470.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:07:39 Download gff for
BS07470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RC | 1..1095 | 17..1111 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:46:42 Download gff for
BS07470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RC | 316..1416 | 17..1117 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:36 Download gff for
BS07470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RC | 318..1412 | 17..1111 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:07:39 Download gff for
BS07470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RC | 316..1416 | 17..1117 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:33 Download gff for
BS07470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RM | 624..1718 | 17..1111 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:33 Download gff for
BS07470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20827032..20827157 | 867..992 | 100 | -> | Plus |
| 2L | 20827497..20827615 | 993..1111 | 100 | | Plus |
| 2L | 20825421..20825512 | 17..108 | 100 | -> | Plus |
| 2L | 20825668..20826087 | 109..528 | 100 | -> | Plus |
| 2L | 20826633..20826970 | 529..866 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:36 Download gff for
BS07470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20825421..20825512 | 17..108 | 100 | -> | Plus |
| arm_2L | 20825668..20826087 | 109..528 | 100 | -> | Plus |
| arm_2L | 20826633..20826970 | 529..866 | 100 | -> | Plus |
| arm_2L | 20827032..20827157 | 867..992 | 100 | -> | Plus |
| arm_2L | 20827497..20827615 | 993..1111 | 100 | | Plus |
BS07470.pep Sequence
Translation from 16 to 1110
> BS07470.pep
MLNRFIGLSAAIVGRSSRISGFPFSPLLKAGNQSQNRTMSAGKAFKVLVT
HPEVPQEGIDLLKENCEIVQVQSVPINRAELLEKIRGVDGVLWGGHEPLN
AEALDAAGPQLKSISTMSAGIDYVDVPEVKRRKIPLGHTPTVLNTAVADL
AVGLLIAASRRFHEGRKTIDNDKWENYHLNWLLGQDIRDSTVGFYGFGGI
GQAIAKRLSGFDIDKVLYTTRRRVHKEIEEEFNAKKVDFDTLLAESDFVV
IASPLTKDTQGVFNATAFNKMKQTAVLVNIARGKIVNQDDLYEALKANRI
FSAGLDVTDPEPLSPKDKLLTLDNVVVLPHIGSATKRTRADMSTIAAHNV
LRGLAGEPMLSPAY*
BS07470.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9331-PI | 364 | CG9331-PI | 1..364 | 1..364 | 1849 | 100 | Plus |
| CG9331-PH | 364 | CG9331-PH | 1..364 | 1..364 | 1849 | 100 | Plus |
| CG9331-PM | 364 | CG9331-PM | 1..364 | 1..364 | 1849 | 100 | Plus |
| CG9331-PC | 364 | CG9331-PC | 1..364 | 1..364 | 1849 | 100 | Plus |
| CG9331-PL | 364 | CG9331-PL | 32..364 | 32..364 | 1698 | 100 | Plus |
