Clone Sequence Records
BS07471.3prime Sequence
893 bp (842 high quality bases) assembled on 2006-01-06
> BS07471.3prime
ATGGTCTAGAAAGCTTTTAATAGGAGCGAATCGCTGGTGGAACAGTAGAG
ACTTCGTTGTCCAGCGTGGTATCGATCACGTTTCTGTAGTCCAGCGTAAT
GTCTCCGTTGTCATTGCACACCCACGAGAGCGTGTGCTTGCGCCAGTGCT
GATCCATGGGCTTCTTCTGCTGACCATCCAGGGGCTTGCTGAAATCGTAT
TCATCCTCGCGAACCTTGAAGTCCTCGCGGGCGTGGGCACCTCGCGATTC
CTTGCGCGCCTCAGCGCTCACAATAGTCATCTGGGCATTGGCCAACAGAT
TCTGCAGCTCCAGCGTCTCCACCAGATCGGAGTTCCAGATAAGCGACCTA
TCGACAACCTTGATGTCCTTGAACTGCTTGTAGATCTCCTTCATCTTGTT
CACACCGTCCTGCAGGATGGGGCCATCGCGGAACACAGCAGCATGATGCT
GCATGGTCTTCTGCATCTTCAGACGCAGATCGGCGGTGGTGATCTGGCCG
TTGGCATGGCGCAGCTTATCGAGGTTAGCAACAGAGGCCTCGCCAGCGTT
TTCCTTGAGGGTGGGAGCCGGTGCACCAGGCTTATTCAGCTCGGCGATGG
TCTTGGCGCATGCACGTCCGAAGACCACCAGATCCAGCAGAGAGTTGGCA
CCCAGACGGTTGGCACCATGCACCGAGCTGGAAGCAGCCTCACCAGCGGC
ATACAGTCCCGGCACAATCACATCCTTGCCATCCTTGTCAATGGTGATTA
CCTGGCCGCGATAGTTAGTCGGCACACCGCCCATGTTGTAATGCACGGTG
GGCAACACGGGGATGGGCTCACGGGTCACATCAACACCGGCGAAGATCAT
GGCGGTCTCGGAGATGCCAGGCAGACGCTCCGCGAGCTGCTTG
BS07471.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17246-PC | 1986 | Scs-fp-RC | 1110..1986 | 893..17 | 4385 | 100 | Minus |
| CG17246-PB | 1986 | Scs-fp-RB | 1110..1986 | 893..17 | 4385 | 100 | Minus |
| CG17246-PA | 1986 | Scs-fp-RA | 1110..1986 | 893..17 | 4385 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:53:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SdhA-RA | 2750 | CG17246-RA | 1338..2215 | 893..16 | 4390 | 100 | Minus |
| SdhA-RC | 2663 | CG17246-RC | 1251..2128 | 893..16 | 4390 | 100 | Minus |
| SdhA-RB | 2617 | CG17246-RB | 1205..2082 | 893..16 | 4390 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:53:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19392844..19393391 | 346..893 | 2740 | 100 | Plus |
| 2R | 25286936 | 2R | 19392398..19392578 | 16..196 | 905 | 100 | Plus |
| 2R | 25286936 | 2R | 19392638..19392791 | 196..349 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:53:19 has no hits.
BS07471.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:53 Download gff for
BS07471.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17246-PA | 1110..1986 | 17..893 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:04:23 Download gff for
BS07471.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17246-PA | 1110..1986 | 17..893 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:55:24 Download gff for
BS07471.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SdhA-RB | 1205..2082 | 16..893 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:46:28 Download gff for
BS07471.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SdhA-RB | 1205..2082 | 16..893 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:46:28 Download gff for
BS07471.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19392398..19392578 | 16..196 | 100 | <- | Plus |
| 2R | 19392639..19392789 | 197..347 | 100 | <- | Plus |
| 2R | 19392846..19393391 | 348..893 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:55:24 Download gff for
BS07471.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15279903..15280083 | 16..196 | 100 | <- | Plus |
| arm_2R | 15280144..15280294 | 197..347 | 100 | <- | Plus |
| arm_2R | 15280351..15280896 | 348..893 | 100 | | Plus |
BS07471.5prime Sequence
940 bp (851 high quality bases) assembled on 2006-01-06
> BS07471.5prime
GAAGTTATCAGTCGACATGTCCGGAATCATGCGTGTGCCATCGATTTTGG
CCAAAAATGCAGTCGCCTCCATGCAACGTGCCGCAGCCGTTGGAGTGCAG
CGCAGTTACCACATCACACACGGCCGCCAGCAGGCCTCGGCGGCGAATCC
GGACAAGATATCGAAGCAGTACCCGGTGGTGGATCACGCCTACGATGCGA
TCGTCGTGGGAGCAGGAGGAGCCGGCTTGCGGGCGGCTTTTGGCCTGGTG
GCTGAGGGATTTCGCACGGCGGTGATCACCAAGCTTTTCCCCACCCGCTC
GCACACGATCGCCGCCCAGGGCGGTATCAATGCCGCTCTCGGCAACATGG
AGGAGGACGACTGGAAGTGGCACATGTACGACACGGTCAAGGGCTCCGAT
TGGCTGGGCGACCAGGATGCCATCCACTACATGACCCGCGAGGCGCCCAA
GGCTGTCATTGAGCTGGAGAACTACGGCATGCCCTTCTCGCGTACCCAGG
ACGGTAAGATCTACCAGCGCGCCTTCGGTGGACAGAGTCTGAAGTTCGGC
AAGGGCGGACAGGCCCATCGCTGCTGTGCTGTGGCTGATCGTACTGGTCA
CTCGCTGCTGCACACGCTATACGGTCAATCGCTGAGCTACGACTGCAACT
ACTTTGTGGAGTACTTTGCCCTGGATCTGATCTTCGAGGACGGCGAGTGC
CGTGGTGTGCTGGCCCTGAACCTGGAGGATGGCACACTGCACCGATTCCG
CGCTAAGAACACGGTCATTGCCACCGGTGGATATGGACGAGCATTCTTCT
CCTGCACCTCGGCGCACACATGTACCGGTGACGGTACTGCTATGGTTGCA
CGCCAGGGACTGCCCTCTCAGGATCTGGAGTTCGTGCAGTTCCATCCTAC
TGGCATCTACGGCGCCGGATGTCTCATCACCGAGGGCTGC
BS07471.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:48:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17246-PC | 1986 | Scs-fp-RC | 1..924 | 17..940 | 4620 | 100 | Plus |
| CG17246-PB | 1986 | Scs-fp-RB | 1..924 | 17..940 | 4620 | 100 | Plus |
| CG17246-PA | 1986 | Scs-fp-RA | 1..924 | 17..940 | 4620 | 100 | Plus |
| CG5718-PA | 1956 | CG5718-RA | 838..890 | 884..936 | 140 | 90.5 | Plus |
| CG5718-PA | 1956 | CG5718-RA | 325..356 | 377..408 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:17:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SdhA-RA | 2750 | CG17246-RA | 227..1152 | 15..940 | 4630 | 100 | Plus |
| SdhA-RC | 2663 | CG17246-RC | 140..1065 | 15..940 | 4630 | 100 | Plus |
| SdhA-RB | 2617 | CG17246-RB | 94..1019 | 15..940 | 4630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:17:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19393577..19394444 | 940..73 | 4340 | 100 | Minus |
| 3L | 28110227 | 3L | 11923802..11924551 | 936..193 | 460 | 71.1 | Minus |
| 2R | 25286936 | 2R | 19395687..19395745 | 73..15 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 13:17:10 has no hits.
BS07471.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:13:54 Download gff for
BS07471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17246-PA | 1..924 | 17..940 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:04:24 Download gff for
BS07471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17246-PA | 1..924 | 17..940 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:31:53 Download gff for
BS07471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SdhA-RB | 87..1019 | 9..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:42:40 Download gff for
BS07471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SdhA-RB | 87..1019 | 9..940 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:42:40 Download gff for
BS07471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19393577..19394443 | 74..940 | 100 | <- | Minus |
| 2R | 19395687..19395752 | 9..73 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:31:53 Download gff for
BS07471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15281082..15281948 | 74..940 | 100 | <- | Minus |
| arm_2R | 15283192..15283257 | 9..73 | 95 | | Minus |
BS07471.complete Sequence
2018 bp assembled on 2008-01-03
GenBank Submission: FJ635879
> BS07471.complete
GAAGTTATCAGTCGACATGTCCGGAATCATGCGTGTGCCATCGATTTTGG
CCAAAAATGCAGTCGCCTCCATGCAACGTGCCGCAGCCGTTGGAGTGCAG
CGCAGTTACCACATCACACACGGCCGCCAGCAGGCCTCGGCGGCGAATCC
GGACAAGATATCGAAGCAGTACCCGGTGGTGGATCACGCCTACGATGCGA
TCGTCGTGGGAGCAGGAGGAGCCGGCTTGCGGGCGGCTTTTGGCCTGGTG
GCTGAGGGATTTCGCACGGCGGTGATCACCAAGCTTTTCCCCACCCGCTC
GCACACGATCGCCGCCCAGGGCGGTATCAATGCCGCTCTCGGCAACATGG
AGGAGGACGACTGGAAGTGGCACATGTACGACACGGTCAAGGGCTCCGAT
TGGCTGGGCGACCAGGATGCCATCCACTACATGACCCGCGAGGCGCCCAA
GGCTGTCATTGAGCTGGAGAACTACGGCATGCCCTTCTCGCGTACCCAGG
ACGGTAAGATCTACCAGCGCGCCTTCGGTGGACAGAGTCTGAAGTTCGGC
AAGGGCGGACAGGCCCATCGCTGCTGTGCTGTGGCTGATCGTACTGGTCA
CTCGCTGCTGCACACGCTATACGGTCAATCGCTGAGCTACGACTGCAACT
ACTTTGTGGAGTACTTTGCCCTGGATCTGATCTTCGAGGACGGCGAGTGC
CGTGGTGTGCTGGCCCTGAACCTGGAGGATGGCACACTGCACCGATTCCG
CGCTAAGAACACGGTCATTGCCACCGGTGGATATGGACGAGCATTCTTCT
CCTGCACCTCGGCGCACACATGTACCGGTGACGGTACTGCTATGGTTGCA
CGCCAGGGACTGCCCTCTCAGGATCTGGAGTTCGTGCAGTTCCATCCTAC
TGGCATCTACGGCGCCGGATGTCTCATCACCGAGGGCTGCCGCGGTGAGG
GTGGTTACCTGATCAACGGTAATGGTGAGCGCTTCATGGAGCGCTATGCT
CCTGTGGCCAAGGATCTGGCCTCTCGCGACGTCGTCTCGCGGTCGATGAC
CATCGAGATCATGGAGGGTCGTGGCGCTGGACCCGAGAAGGATCACGTGT
ACCTGCAACTGCACCACTTGCCGCCCAAGCAGCTCGCGGAGCGTCTGCCT
GGCATCTCCGAGACCGCCATGATCTTCGCCGGTGTTGATGTGACCCGTGA
GCCCATCCCCGTGTTGCCCACCGTGCATTACAACATGGGCGGTGTGCCGA
CTAACTATCGCGGCCAGGTAATCACCATTGACAAGGATGGCAAGGATGTG
ATTGTGCCGGGACTGTATGCCGCTGGTGAGGCTGCTTCCAGCTCGGTGCA
TGGTGCCAACCGTCTGGGTGCCAACTCTCTGCTGGATCTGGTGGTCTTCG
GACGTGCATGCGCCAAGACCATCGCCGAGCTGAATAAGCCTGGTGCACCG
GCTCCCACCCTCAAGGAAAACGCTGGCGAGGCCTCTGTTGCTAACCTCGA
TAAGCTGCGCCATGCCAACGGCCAGATCACCACCGCCGATCTGCGTCTGA
AGATGCAGAAGACCATGCAGCATCATGCTGCTGTGTTCCGCGATGGCCCC
ATCCTGCAGGACGGTGTGAACAAGATGAAGGAGATCTACAAGCAGTTCAA
GGACATCAAGGTTGTCGATAGGTCGCTTATCTGGAACTCCGATCTGGTGG
AGACGCTGGAGCTGCAGAATCTGTTGGCCAATGCCCAGATGACTATTGTG
AGCGCTGAGGCGCGCAAGGAATCGCGAGGTGCCCACGCCCGCGAGGACTT
CAAGGTTCGCGAGGATGAATACGATTTCAGCAAGCCCCTGGATGGTCAGC
AGAAGAAGCCCATGGATCAGCACTGGCGCAAGCACACGCTCTCGTGGGTG
TGCAATGACAACGGAGACATTACGCTGGACTACAGAAACGTGATCGATAC
CACGCTGGACAACGAAGTCTCTACTGTTCCACCAGCGATTCGCTCCTATT
AAAAGCTTTCTAGACCAT
BS07471.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:58:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SdhA-RA | 1986 | CG17246-PA | 1..1986 | 17..2002 | 9930 | 100 | Plus |
| SdhA-RC | 1986 | CG17246-PC | 1..1986 | 17..2002 | 9930 | 100 | Plus |
| SdhA-RB | 1986 | CG17246-PB | 1..1986 | 17..2002 | 9930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:58:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SdhA-RA | 2750 | CG17246-RA | 227..2215 | 15..2003 | 9945 | 100 | Plus |
| SdhA-RC | 2663 | CG17246-RC | 140..2128 | 15..2003 | 9945 | 100 | Plus |
| SdhA-RB | 2617 | CG17246-RB | 94..2082 | 15..2003 | 9945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:58:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19392844..19394444 | 1673..73 | 8005 | 100 | Minus |
| 2R | 25286936 | 2R | 19392398..19392578 | 2003..1823 | 905 | 100 | Minus |
| 2R | 25286936 | 2R | 19392638..19392791 | 1823..1670 | 770 | 100 | Minus |
| 3L | 28110227 | 3L | 11923681..11924551 | 1057..193 | 540 | 71.1 | Minus |
| 2R | 25286936 | 2R | 19395687..19395745 | 73..15 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:58:23 has no hits.
BS07471.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:07:36 Download gff for
BS07471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scs-fp-RA | 1..1986 | 17..2002 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:14 Download gff for
BS07471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scs-fp-RA | 194..2177 | 17..2000 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:09 Download gff for
BS07471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SdhA-RB | 96..2079 | 17..2000 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:07:36 Download gff for
BS07471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scs-fp-RA | 185..2180 | 9..2003 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:27 Download gff for
BS07471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SdhA-RB | 96..2079 | 17..2000 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:27 Download gff for
BS07471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19392401..19392578 | 1823..2000 | 100 | <- | Minus |
| 2R | 19392639..19392789 | 1672..1822 | 100 | <- | Minus |
| 2R | 19392846..19394443 | 74..1671 | 100 | <- | Minus |
| 2R | 19395687..19395743 | 17..73 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:09 Download gff for
BS07471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15279906..15280083 | 1823..2000 | 100 | <- | Minus |
| arm_2R | 15280144..15280294 | 1672..1822 | 100 | <- | Minus |
| arm_2R | 15280351..15281948 | 74..1671 | 100 | <- | Minus |
| arm_2R | 15283192..15283248 | 17..73 | 100 | | Minus |
BS07471.pep Sequence
Translation from 16 to 2001
> BS07471.pep
MSGIMRVPSILAKNAVASMQRAAAVGVQRSYHITHGRQQASAANPDKISK
QYPVVDHAYDAIVVGAGGAGLRAAFGLVAEGFRTAVITKLFPTRSHTIAA
QGGINAALGNMEEDDWKWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIEL
ENYGMPFSRTQDGKIYQRAFGGQSLKFGKGGQAHRCCAVADRTGHSLLHT
LYGQSLSYDCNYFVEYFALDLIFEDGECRGVLALNLEDGTLHRFRAKNTV
IATGGYGRAFFSCTSAHTCTGDGTAMVARQGLPSQDLEFVQFHPTGIYGA
GCLITEGCRGEGGYLINGNGERFMERYAPVAKDLASRDVVSRSMTIEIME
GRGAGPEKDHVYLQLHHLPPKQLAERLPGISETAMIFAGVDVTREPIPVL
PTVHYNMGGVPTNYRGQVITIDKDGKDVIVPGLYAAGEAASSSVHGANRL
GANSLLDLVVFGRACAKTIAELNKPGAPAPTLKENAGEASVANLDKLRHA
NGQITTADLRLKMQKTMQHHAAVFRDGPILQDGVNKMKEIYKQFKDIKVV
DRSLIWNSDLVETLELQNLLANAQMTIVSAEARKESRGAHAREDFKVRED
EYDFSKPLDGQQKKPMDQHWRKHTLSWVCNDNGDITLDYRNVIDTTLDNE
VSTVPPAIRSY*
BS07471.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:18:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SdhA-PA | 661 | CG17246-PA | 1..661 | 1..661 | 3468 | 100 | Plus |
| SdhA-PC | 661 | CG17246-PC | 1..661 | 1..661 | 3468 | 100 | Plus |
| SdhA-PB | 661 | CG17246-PB | 1..661 | 1..661 | 3468 | 100 | Plus |
| CG5718-PA | 651 | CG5718-PA | 27..651 | 39..661 | 2182 | 63.7 | Plus |
